pycom11g05930

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
4563839 .. 4567972
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGCACAATCAAGATATCAACTTTTGCTCTCAAATTTACGTTACTCCGGTACTCTCTTCTTTTCAGCTTTGGCTTTTTCTTCATTACCCAATCATCTCTCTTCTCTGCAAGACTGCAATGGCTCTTTTGTGCTCCCAATCTATTGTTTCATGCTTAGCTCTTTTGTGCTTAGTTTTTGTTCAATCCCACTCTGCCATAATATACAGCATGAAGAACCACCACCACAACTTCCACCATCACAGAACAGCTCCGATGTTCCAAACCAACCAATCCAATTGCGCATTGTTTGCAGGCACTTGGGTCCAAGACGACTCCTACCCAATGTACCAATCTTCCGAGTGCCCTTTAATCATCGACCCTGAATTCAACTGCCAAATGTACGGCCGCCCGGACTCCGATTACCTCAAGTACAGATGGAGACCCCTCAATTGTGAGCTCCCAAGGTTCAATGGGGCTGAGTTTCTGCTCAAAATGAAAGGGAAAACAGTGATGTTTGTAGGGGATTCACTTGGGAGGAACCAATGGGAGTCTTTGGTTTGTCTGATTTACTCTACCAATCCGCAAACCCAGACTCAAATGGTTAAAGGGGATCCACTCTCAACATTCAGTTTCCTGGACTACGGCTTGACACTGCAATTTTACAAAGCTCCGTACCTGGTCGACATAGAAATGTATCAAGGGAAGAGAGTTCTGAGGCTTGATGACATTTCGGAGAACAGCAAGGTGTGGTGGAACGCCGACGTGCTGTCGTTTAACACCGGTCATTGGTGGAGCCACAAAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGGAATTATTACCAAGACATGGACCGTTTGGCTGCTTTGGAGAAGGGGATGAAAACATGGGCGAATTGGATTGACTCGAACATCGACACCACAAAGACCAGAGTTTTCTTCCTCTCTATTTCTCCCACACACTACGACCCAAATGAATGGAATGGGGGTGCAACTCCTACAACCACCAAGAACTGCTATGGAGAAACAGCACCAATGAAAGTGAGCGGAGTAATTTATCCCGGGACTACTTATCCAGACCAAATGAGGGTGATGGACAGTGTGATCCGGGGCATGAGAAATCCTCCGTCTTTGCTGGACATCACAATGCTTTCAGAGCTGAGAAAAGACGGGCACCCATCAATCTACAGTGGTGATTTGAGCCCTCAGCAGAGAGCCAGTCCCGACCGTTCAGCAGATTGCAGCCATTGGTGCCTTCCTGGACTGCCAGACACTTGGAACCAACTCTTTTACACAACTTTGTTCTTCTAA

Protein Analysis

432

Amino Acids

49.55

Weight (kDa)

6.14

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 92 - 145 1.4e-20 PMR5 N terminal Domain
PC-Esterase PF13839 146 - 427 4.6e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 280
AccB1I GGYRCC 2 cut(s) 1158, 1236
AccB7I CCANNNNNTGG 1 cut(s) 835
AccBSI CCGCTC 1 cut(s) 1032
AccI GTMKAC 1 cut(s) 660
AciI CCGC 3 cut(s) 385, 560, 1032
AclWI GGATC 3 cut(s) 584, 597, 1084
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 2 cut(s) 33, 362
AfaI GTAC 5 cut(s) 51, 326, 380, 410, 653
AfiI CCNNNNNNNGG 4 cut(s) 765, 796, 835, 1072
AgeI ACCGGT 1 cut(s) 758
AgsI TTSAA 3 cut(s) 182, 367, 448
AhdI GACNNNNNGTC 1 cut(s) 745
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 3 cut(s) 612, 654, 1243
AluBI AGCT 6 cut(s) 67, 158, 248, 436, 647, 1144
AluI AGCT 6 cut(s) 67, 158, 248, 436, 647, 1144
Alw21I GWGCWC 2 cut(s) 134, 438
Alw26I GTCTC 2 cut(s) 412, 791
AlwI GGATC 3 cut(s) 584, 597, 1084
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 848, 1227
ApoI RAATTY 2 cut(s) 33, 362
AsiGI ACCGGT 1 cut(s) 758
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 301, 838
AsuC2I CCSGG 4 cut(s) 389, 1047, 1048, 1094
AsuHPI GGTGA 2 cut(s) 1087, 1190
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 2 cut(s) 301, 838
BaeGI GKGCMC 2 cut(s) 344, 1161
BamHI GGATCC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 1158, 1236
BanII GRGCYC 2 cut(s) 438, 1190
Bbv12I GWGCWC 2 cut(s) 134, 438
BbvCI CCTCAGC 1 cut(s) 1191
BbvI GCAGC 2 cut(s) 835, 1239
BccI CCATC 4 cut(s) 243, 408, 1072, 1171
BceAI ACGGC 2 cut(s) 397, 637
BciT130I CCWGG 3 cut(s) 614, 656, 1245
BcnI CCSGG 4 cut(s) 389, 1047, 1048, 1094
BcoDI GTCTC 2 cut(s) 412, 791
BfmI CTRYAG 1 cut(s) 1171
BisI GCNGC 3 cut(s) 385, 849, 1228
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 3 cut(s) 386, 850, 1229
Bme1390I CCNGG 7 cut(s) 389, 614, 656, 1047, 1048, 1094, 1245
Bme18I GGWCC 2 cut(s) 301, 838
BmeRI GACNNNNNGTC 1 cut(s) 745
BmeT110I CYCGRG 1 cut(s) 1046
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 301, 838
BmiI GGNNCC 7 cut(s) 302, 518, 591, 773, 1160, 1238, 1265
BmrFI CCNGG 7 cut(s) 389, 614, 656, 1047, 1048, 1094, 1245
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
Bpu10I CCTNAGC 1 cut(s) 1191
Bpu1102I GCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 4 cut(s) 389, 1047, 1048, 1094
BsaI GGTCTC 2 cut(s) 412, 791
BsaJI CCNNGG 4 cut(s) 440, 790, 1046, 1093
BsaWI WCCGGW 2 cut(s) 46, 758
Bsc4I CCNNNNNNNGG 4 cut(s) 765, 796, 835, 1072
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 3 cut(s) 614, 656, 1245
BseDI CCNNGG 4 cut(s) 440, 790, 1046, 1093
BseGI GGATG 1 cut(s) 870
BseLI CCNNNNNNNGG 4 cut(s) 765, 796, 835, 1072
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 4 cut(s) 447, 683, 1136, 1205
BseNI ACTGG 1 cut(s) 1203
BseSI GKGCMC 2 cut(s) 344, 1161
BseX3I CGGCCG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 835, 1239
Bsh1285I CGRYCG 2 cut(s) 385, 1213
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 1158, 1236
BshTI ACCGGT 1 cut(s) 758
BsiEI CGRYCG 2 cut(s) 385, 1213
BsiHKAI GWGCWC 2 cut(s) 134, 438
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 5 cut(s) 47, 389, 759, 1047, 1093
BslFI GGGAC 2 cut(s) 1063, 1191
BslI CCNNNNNNNGG 4 cut(s) 765, 796, 835, 1072
BsmAI GTCTC 2 cut(s) 412, 791
BsmFI GGGAC 2 cut(s) 1063, 1191
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 2 cut(s) 412, 791
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 5 cut(s) 134, 344, 438, 1161, 1190
Bsp143I GATC 2 cut(s) 589, 1089
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 3 cut(s) 385, 560, 1032
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 4 cut(s) 448, 684, 1137, 1204
BspLI GGNNCC 7 cut(s) 302, 518, 591, 773, 1160, 1238, 1265
BspPI GGATC 3 cut(s) 584, 597, 1084
BspT107I GGYRCC 2 cut(s) 1158, 1236
BspTNI GGTCTC 2 cut(s) 412, 791
BsrBI CCGCTC 1 cut(s) 1032
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 1 cut(s) 1203
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 4 cut(s) 440, 790, 1046, 1093
BssMI GATC 2 cut(s) 589, 1089
BssT1I CCWWGG 2 cut(s) 440, 790
Bst2UI CCWGG 3 cut(s) 614, 656, 1245
Bst4CI ACNGT 5 cut(s) 487, 842, 1085, 1175, 1214
Bst6I CTCTTC 3 cut(s) 61, 105, 677
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 6 cut(s) 154, 169, 456, 692, 1145, 1191
BstF5I GGATG 1 cut(s) 870
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 592, 1092
BstMAI GTCTC 2 cut(s) 412, 791
BstMBI GATC 2 cut(s) 589, 1089
BstMCI CGRYCG 2 cut(s) 385, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 287, 1141, 1236
BstNI CCWGG 3 cut(s) 614, 656, 1245
BstSCI CCNGG 7 cut(s) 387, 612, 654, 1045, 1046, 1092, 1243
BstSFI CTRYAG 1 cut(s) 1171
BstSLI GKGCMC 2 cut(s) 344, 1161
BstV1I GCAGC 2 cut(s) 835, 1239
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 2 cut(s) 963, 1260
BstYI RGATCY 1 cut(s) 589
BstZI CGGCCG 1 cut(s) 382
BsuRI GGCC 1 cut(s) 384
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 1 cut(s) 870
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 4 cut(s) 492, 629, 1090, 1180
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 301, 838
Cfr9I CCCGGG 1 cut(s) 1046
CsiI ACCWGGT 1 cut(s) 654
Csp6I GTAC 5 cut(s) 50, 325, 379, 409, 652
CspAI ACCGGT 1 cut(s) 758
CviAII CATG 6 cut(s) 150, 208, 805, 835, 873, 1099
CviQI GTAC 5 cut(s) 50, 325, 379, 409, 652
DdeI CTNAG 6 cut(s) 154, 169, 456, 692, 1145, 1191
DpnI GATC 2 cut(s) 591, 1091
DpnII GATC 2 cut(s) 589, 1089
DriI GACNNNNNGTC 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 382
EagI CGGCCG 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 61, 105, 677
Eam1105I GACNNNNNGTC 1 cut(s) 745
EarI CTCTTC 3 cut(s) 61, 105, 677
Ecl136II GAGCTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 440, 790
Eco24I GRGCYC 2 cut(s) 438, 1190
Eco31I GGTCTC 2 cut(s) 412, 791
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 301, 838
Eco52I CGGCCG 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 1046
EcoICRI GAGCTC 1 cut(s) 436
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 612, 654, 1243
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 440, 790
EcoT38I GRGCYC 2 cut(s) 438, 1190
ErhI CCWWGG 2 cut(s) 440, 790
FaeI CATG 6 cut(s) 153, 211, 808, 838, 876, 1102
FaqI GGGAC 2 cut(s) 1063, 1191
FatI CATG 6 cut(s) 149, 207, 804, 834, 872, 1098
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 385, 849, 1228
FokI GGATG 1 cut(s) 877
FriOI GRGCYC 2 cut(s) 438, 1190
Fsp4HI GCNGC 3 cut(s) 385, 849, 1228
FspI TGCGCA 1 cut(s) 280
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 385, 849, 1228
HaeIII GGCC 1 cut(s) 384
HapII CCGG 5 cut(s) 47, 389, 759, 1047, 1093
HhaI GCGC 1 cut(s) 281
Hin1II CATG 6 cut(s) 153, 211, 808, 838, 876, 1102
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 7 cut(s) 311, 392, 503, 527, 571, 809, 890
HpaII CCGG 5 cut(s) 47, 389, 759, 1047, 1093
HphI GGTGA 2 cut(s) 1087, 1190
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 7 cut(s) 252, 337, 397, 543, 693, 712, 1141
Hpy188III TCNNGA 4 cut(s) 11, 813, 1061, 1208
Hpy8I GTNNAC 1 cut(s) 661
Hpy99I CGWCG 1 cut(s) 743
HpyAV CCTTC 2 cut(s) 853, 1250
HpyCH4III ACNGT 5 cut(s) 487, 842, 1085, 1175, 1214
HpyCH4IV ACGT 2 cut(s) 39, 741
HpyCH4V TGCA 7 cut(s) 4, 108, 116, 290, 634, 977, 1227
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 1141, 1236
HpyF3I CTNAG 6 cut(s) 154, 169, 456, 692, 1145, 1191
HpySE526I ACGT 2 cut(s) 39, 741
Hsp92II CATG 6 cut(s) 153, 211, 808, 838, 876, 1102
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 589, 1089
LmnI GCTCC 5 cut(s) 137, 253, 441, 652, 771
Lsp1109I GCAGC 2 cut(s) 835, 1239
MabI ACCWGGT 1 cut(s) 654
MaeII ACGT 2 cut(s) 39, 741
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 591, 1091
MbiI CCGCTC 1 cut(s) 1032
MboI GATC 2 cut(s) 589, 1089
MboII GAAGA 8 cut(s) 48, 71, 92, 223, 324, 694, 916, 1282
MfeI CAATTG 2 cut(s) 274, 427
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 5 cut(s) 134, 344, 438, 1161, 1190
MluCI AATT 8 cut(s) 33, 274, 362, 427, 635, 820, 880, 1038
MlyI GAGTC 5 cut(s) 305, 386, 536, 565, 884
MseI TTAA 3 cut(s) 347, 582, 753
MslI CAYNNNNRTG 2 cut(s) 668, 1130
MspI CCGG 5 cut(s) 47, 389, 759, 1047, 1093
MspR9I CCNGG 7 cut(s) 389, 614, 656, 1047, 1048, 1094, 1245
MunI CAATTG 2 cut(s) 274, 427
MvaI CCWGG 3 cut(s) 614, 656, 1245
MwoI GCNNNNNNNGC 3 cut(s) 287, 1141, 1236
NciI CCSGG 4 cut(s) 389, 1047, 1048, 1094
NdeII GATC 2 cut(s) 589, 1089
NlaIII CATG 6 cut(s) 153, 211, 808, 838, 876, 1102
NlaIV GGNNCC 7 cut(s) 302, 518, 591, 773, 1160, 1238, 1265
NsbI TGCGCA 1 cut(s) 280
PfeI GAWTC 2 cut(s) 503, 809
PflMI CCANNNNNTGG 1 cut(s) 835
PfoI TCCNGGA 2 cut(s) 612, 1243
PinAI ACCGGT 1 cut(s) 758
PkrI GCNGC 3 cut(s) 386, 850, 1229
PleI GAGTC 5 cut(s) 305, 386, 535, 565, 884
PpsI GAGTC 5 cut(s) 305, 386, 535, 565, 884
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 612, 654, 1243
PspGI CCWGG 3 cut(s) 612, 654, 1243
PspN4I GGNNCC 7 cut(s) 302, 518, 591, 773, 1160, 1238, 1265
PspPI GGNCC 2 cut(s) 301, 838
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 5 cut(s) 51, 326, 380, 410, 653
RsaNI GTAC 5 cut(s) 50, 325, 379, 409, 652
RseI CAYNNNNRTG 2 cut(s) 668, 1130
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 347, 582, 753
SatI GCNGC 3 cut(s) 385, 849, 1228
Sau3AI GATC 2 cut(s) 589, 1089
Sau96I GGNCC 2 cut(s) 301, 838
SchI GAGTC 5 cut(s) 305, 386, 536, 565, 884
ScrFI CCNGG 7 cut(s) 389, 614, 656, 1047, 1048, 1094, 1245
SduI GDGCHC 5 cut(s) 134, 344, 438, 1161, 1190
SexAI ACCWGGT 1 cut(s) 654
SfcI CTRYAG 1 cut(s) 1171
SinI GGWCC 2 cut(s) 301, 838
SmaI CCCGGG 1 cut(s) 1048
SmiMI CAYNNNNRTG 2 cut(s) 668, 1130
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 8 cut(s) 33, 274, 362, 427, 635, 820, 880, 1038
SsiI CCGC 3 cut(s) 385, 560, 1032
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 7 cut(s) 387, 612, 654, 1045, 1046, 1092, 1243
StyI CCWWGG 2 cut(s) 440, 790
TaaI ACNGT 5 cut(s) 487, 842, 1085, 1175, 1214
TaiI ACGT 2 cut(s) 42, 744
TaqI TCGA 4 cut(s) 354, 660, 893, 900
TasI AATT 8 cut(s) 33, 274, 362, 427, 635, 820, 880, 1038
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 2 cut(s) 503, 809
Tru1I TTAA 3 cut(s) 347, 582, 753
Tru9I TTAA 3 cut(s) 347, 582, 753
TscAI CASTG 4 cut(s) 492, 636, 1090, 1180
TseI GCWGC 2 cut(s) 848, 1227
TspDTI ATGAA 7 cut(s) 71, 138, 224, 488, 881, 975, 1037
TspGWI ACGGA 2 cut(s) 639, 1101
TspMI CCCGGG 1 cut(s) 1046
TspRI CASTG 4 cut(s) 492, 636, 1090, 1180
Van91I CCANNNNNTGG 1 cut(s) 835
VpaK11BI GGWCC 2 cut(s) 301, 838
XapI RAATTY 2 cut(s) 33, 362
XmaI CCCGGG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.