Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

4593588 .. 4595347

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTCTGAATCCTACCCTCCTCTGTTCCGTTCACACATAGATTCAACCCAGGCCGCTGATTCGGATGACCAAGTCAACCCAGTTCATGATTTGGAGGATCCGATTCCTCTGGTGGATCTCCAGAGCCTGAAACTTGGGGAGGCATGTGAGTTTTGGGGCATTTTTCGTTTGGTCAACCATGGAGTTCCTCCAACCCTTTTGACCCAACTTGAAGAGCATGCCAAAGCGGTTTTTTCCCTGCCGTTTGAATCCAAACAGAGCCTTATCACCAGCCCTCTGTCCTACTTCTGGGGTACCCCTGCCCTTACTCCATCTGGGGCAGCCTTATCAACAAAGGGTACTAGTACCCTCCAGAATATCAATTGGGTTGAAGGACTGAATGTCCCTCTAGCTCAACTCAGTCAATTCCAAACTGACAATCCCACAGTTGCTTCTTTCAGGTACATTTCTTTTCATTCATTGGGCTGTAAAGGTATAATTTCTCTGTGTCTCAAAAGCCTTGTGCTGGAAGAATATGGGAAACACCTAGCCAGGCTAGCCACAACTATATTTGAAGCTATGGTGAAAAGCCTTGGATTGGATCCAATAGAATCCAAATCCCACTTATCCAATCCCACTGGCCTTGTACGTCTATATCGCTACCCACCACATTGCTCCAACTCTGCATCTGCATCTGCATGGGGCATGGACGTCCACACTGACAGCTCTGTGCTCTCGATACTAAACCAAGATGATGTCGGTGGACTCGAAGTTCTCAAAGACACCGAGTGGTTCAATGTAAACCCAGTTCCCAGCACACTAATTGTCAACCTCGGGGACATGATGCAGGCGATTAGCGACGACAAATACAAGAGTGTGAAGCACAGAGTGAAGGTGAACAGAAGCAAAGAGAGAATTTCAATCTGCTACTTTGTGTTTCCTGGAGAAGGCAGTGTGATTCGGAGCTCAAACTACAAGCCCTTTACATATGGTGACTTTCAGAAGGAAGTGCAGAAAGATTTAAAGAGTGTTGGGTATAAGGTTGGGCTCGAGAGATTCAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

38.64

Weight (kDa)

6.07

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 128	8e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 308	6.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	696
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	2 cut(s)	57, 230
AclWI	GGATC	5 cut(s)	95, 108, 126, 578, 591
AcsI	RAATTY	1 cut(s)	897
AcyI	GRCGYC	1 cut(s)	693
AdeI	CACNNNGTG	2 cut(s)	771, 871
AfaI	GTAC	5 cut(s)	298, 343, 349, 446, 630
AfiI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
AgsI	TTSAA	7 cut(s)	48, 215, 251, 374, 557, 778, 903
AhdI	GACNNNNNGTC	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	3 cut(s)	51, 533, 922
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	5 cut(s)	395, 560, 708, 948, 1046
AluI	AGCT	5 cut(s)	395, 560, 708, 948, 1046
Alw21I	GWGCWC	2 cut(s)	717, 950
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	5 cut(s)	95, 108, 126, 578, 591
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	2 cut(s)	815, 1031
AoxI	GGCC	2 cut(s)	54, 622
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	897
Asp718I	GGTACC	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	262, 577, 889, 986
AsuNHI	GCTAGC	1 cut(s)	538
AvaI	CYCGRG	2 cut(s)	815, 1031
BamHI	GGATCC	2 cut(s)	100, 583
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	950, 1032
Bbv12I	GWGCWC	2 cut(s)	717, 950
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	3 cut(s)	53, 535, 924
BcoDI	GTCTC	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	4 cut(s)	345, 392, 530, 539
BisI	GCNGC	2 cut(s)	57, 324
BlsI	GCNGC	2 cut(s)	58, 325
Bme1390I	CCNGG	3 cut(s)	53, 535, 924
BmeRI	GACNNNNNGTC	1 cut(s)	383
BmeT110I	CYCGRG	2 cut(s)	815, 1031
BmiI	GGNNCC	3 cut(s)	102, 298, 585
BmrFI	CCNGG	3 cut(s)	53, 535, 924
BmrI	ACTGGG	2 cut(s)	77, 782
BmsI	GCATC	3 cut(s)	677, 683, 816
BmtI	GCTAGC	1 cut(s)	542
BmuI	ACTGGG	2 cut(s)	77, 782
BpmI	CTGGAG	3 cut(s)	107, 338, 945
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	4 cut(s)	51, 181, 574, 814
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
Bse1I	ACTGG	3 cut(s)	83, 625, 788
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	3 cut(s)	53, 535, 924
BseDI	CCNNGG	4 cut(s)	51, 181, 574, 814
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	3 cut(s)	83, 625, 788
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	794
BsgI	GTGCAG	1 cut(s)	1013
BshFI	GGCC	2 cut(s)	56, 624
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	717, 950
BsiHKCI	CYCGRG	2 cut(s)	815, 1031
BslFI	GGGAC	2 cut(s)	371, 833
BslI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	371, 833
BsnI	GGCC	2 cut(s)	56, 624
BsoBI	CYCGRG	2 cut(s)	815, 1031
Bsp1286I	GDGCHC	3 cut(s)	717, 950, 1032
Bsp143I	GATC	3 cut(s)	100, 118, 583
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	2 cut(s)	57, 230
BspANI	GGCC	2 cut(s)	56, 624
BspCNI	CTCAG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	102, 298, 585
BspOI	GCTAGC	1 cut(s)	542
BspPI	GGATC	5 cut(s)	95, 108, 126, 578, 591
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	83, 625, 788
BssECI	CCNNGG	4 cut(s)	51, 181, 574, 814
BssMI	GATC	3 cut(s)	100, 118, 583
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	181, 574
Bst2UI	CCWGG	3 cut(s)	53, 535, 924
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	222, 540, 831
BstDEI	CTNAG	2 cut(s)	401, 1047
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	927
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	3 cut(s)	103, 121, 586
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	100, 118, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	3 cut(s)	53, 535, 924
BstNSI	RCATGY	2 cut(s)	150, 224
BstSCI	CCNGG	3 cut(s)	51, 533, 922
BstV1I	GCAGC	1 cut(s)	335
BstX2I	RGATCY	3 cut(s)	100, 118, 583
BstYI	RGATCY	3 cut(s)	100, 118, 583
BsuRI	GGCC	2 cut(s)	56, 624
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	3 cut(s)	618, 699, 940
Cac8I	GCNNGC	3 cut(s)	222, 540, 831
CaiI	CAGNNNCTG	1 cut(s)	130
CciI	TCATGA	1 cut(s)	88
Csp6I	GTAC	5 cut(s)	297, 342, 348, 445, 629
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	7 cut(s)	89, 147, 182, 221, 681, 688, 823
CviQI	GTAC	5 cut(s)	297, 342, 348, 445, 629
DdeI	CTNAG	2 cut(s)	401, 1047
DpnI	GATC	3 cut(s)	102, 120, 585
DpnII	GATC	3 cut(s)	100, 118, 583
DraI	TTTAAA	1 cut(s)	1005
DraIII	CACNNNGTG	2 cut(s)	771, 871
DriI	GACNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	181, 574
Eco24I	GRGCYC	2 cut(s)	950, 1032
Eco53kI	GAGCTC	1 cut(s)	948
Eco88I	CYCGRG	2 cut(s)	815, 1031
EcoICRI	GAGCTC	1 cut(s)	948
EcoNI	CCTNNNNNAGG	1 cut(s)	927
EcoRII	CCWGG	3 cut(s)	51, 533, 922
EcoT14I	CCWWGG	2 cut(s)	181, 574
EcoT38I	GRGCYC	2 cut(s)	950, 1032
ErhI	CCWWGG	2 cut(s)	181, 574
FaeI	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
FaqI	GGGAC	2 cut(s)	371, 833
FatI	CATG	7 cut(s)	88, 146, 181, 220, 680, 687, 822
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	2 cut(s)	57, 324
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	950, 1032
Fsp4HI	GCNGC	2 cut(s)	57, 324
FspBI	CTAG	4 cut(s)	345, 392, 530, 539
GluI	GCNGC	2 cut(s)	57, 324
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	3 cut(s)	107, 338, 945
HaeIII	GGCC	2 cut(s)	56, 624
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
HincII	GTYRAC	3 cut(s)	79, 178, 811
HindII	GTYRAC	3 cut(s)	79, 178, 811
HinfI	GANTC	9 cut(s)	11, 44, 62, 106, 251, 593, 747, 940, 1038
HphI	GGTGA	4 cut(s)	262, 577, 889, 986
Hpy166II	GTNNAC	8 cut(s)	35, 79, 178, 697, 746, 784, 811, 880
Hpy188I	TCNGA	6 cut(s)	10, 67, 105, 945, 984, 1043
Hpy188III	TCNNGA	5 cut(s)	89, 124, 355, 718, 1033
Hpy8I	GTNNAC	8 cut(s)	35, 79, 178, 697, 746, 784, 811, 880
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	4 cut(s)	368, 868, 923, 979
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	631, 693
HpyCH4V	TGCA	5 cut(s)	668, 674, 680, 829, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	401, 1047
HpySE526I	ACGT	2 cut(s)	631, 693
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	100, 118, 583
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	662, 945
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	677, 683, 816
MaeI	CTAG	4 cut(s)	345, 392, 530, 539
MaeII	ACGT	2 cut(s)	631, 693
MaeIII	GTNAC	1 cut(s)	974
MalI	GATC	3 cut(s)	102, 120, 585
MboI	GATC	3 cut(s)	100, 118, 583
MboII	GAAGA	2 cut(s)	227, 524
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	3 cut(s)	100, 118, 583
MhlI	GDGCHC	3 cut(s)	717, 950, 1032
MluCI	AATT	5 cut(s)	364, 407, 480, 804, 897
MlyI	GAGTC	1 cut(s)	741
MmeI	TCCRAC	2 cut(s)	218, 684
MseI	TTAA	1 cut(s)	1004
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	53, 535, 924
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	53, 535, 924
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	3 cut(s)	100, 118, 583
NheI	GCTAGC	1 cut(s)	538
NlaIII	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
NlaIV	GGNNCC	3 cut(s)	102, 298, 585
NmuCI	GTSAC	1 cut(s)	974
NspI	RCATGY	2 cut(s)	150, 224
PaeI	GCATGC	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	1031
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PfeI	GAWTC	8 cut(s)	11, 44, 62, 106, 251, 593, 940, 1038
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	2 cut(s)	58, 325
PleI	GAGTC	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	950
Psp6I	CCWGG	3 cut(s)	51, 533, 922
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	3 cut(s)	51, 533, 922
PspN4I	GGNNCC	3 cut(s)	102, 298, 585
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	100, 118, 583
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	5 cut(s)	298, 343, 349, 446, 630
RsaNI	GTAC	5 cut(s)	297, 342, 348, 445, 629
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	950
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	1004
SatI	GCNGC	2 cut(s)	57, 324
Sau3AI	GATC	3 cut(s)	100, 118, 583
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	3 cut(s)	53, 535, 924
SduI	GDGCHC	3 cut(s)	717, 950, 1032
SfaNI	GCATC	3 cut(s)	677, 683, 816
Sfr274I	CTCGAG	1 cut(s)	1031
SlaI	CTCGAG	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	5 cut(s)	364, 407, 480, 804, 897
SsiI	CCGC	2 cut(s)	57, 230
SspMI	CTAG	4 cut(s)	345, 392, 530, 539
SstI	GAGCTC	1 cut(s)	950
StyD4I	CCNGG	3 cut(s)	51, 533, 922
StyI	CCWWGG	2 cut(s)	181, 574
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	634, 696
TaqI	TCGA	3 cut(s)	719, 750, 1032
TasI	AATT	5 cut(s)	364, 407, 480, 804, 897
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	8 cut(s)	11, 44, 62, 106, 251, 593, 940, 1038
Tru1I	TTAA	1 cut(s)	1004
Tru9I	TTAA	1 cut(s)	1004
TscAI	CASTG	3 cut(s)	625, 706, 940
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	3 cut(s)	77, 446, 450
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	625, 706, 940
Tth111I	GACNNNGTC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	927
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	2 cut(s)	150, 224
XhoI	CTCGAG	1 cut(s)	1031
XspI	CTAG	4 cut(s)	345, 392, 530, 539
ZraI	GACGTC	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.