pycom11g06040

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009893
Physical Location & Seq
Forward (+)
4660300 .. 4661971
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
ATGAAGTTGCTAATTTCTTCCCCTTCTTTTTCTTCATGCTCATCATCATCCAACTCCACTGCTTTTGATGCAACAATGTGCAGTTCAAAAAGCGCCACCACGGGCTGCATTTCTGGAATTTTACGCAGAATTCTCTGCAAGGGAAGCTTCCCCACATACCCTTCTGATCACATCCTAGGAGAAGAAGAAAATTCTGTGGAATCTGGTTCCAGAGATCAAGATTTTAATTCCAAGGATAAAACAGAGATCTCTGCCAGTCCAAGCATTGTGGCAAGGCTGATGGGATTGGATTCAATTCCAGACAGGAACTTGGTCAGCAGCCAATCAACCCAAAATTCAATTTCACGCAGCAAATCCATGAATTCTGTCGACCGGTTTGATAAGCGTCGCGGGATGAAGTCGACTCGATCATTTAGAGAGATGCCTACATTTCTTGAGCTAGAAAATGAGGAATTTTTTATTCTCAGCTTTGAGAATGAGAGGAAAAGCAAGGAAACAGAATCGAAAGGGAGGAAATGTGAAAAGAGACGAAGCCAAAAAACGGAAAACAGAAGAGAAAGAAAGGCAGAGAATAAGAAGCAACTCCAAGAAGGACAAAGCAGAAGGGCTTTGAACGATTTGAATGGGAAAGAGATGCTGAAAAGCAGAAGCACTTCTTGTCAAGATTCCAAAAGTACTTCAATTGCTGCAAAGACGATAGAGAAGAAGAAAACTATATGTGATGTGCTTAAGTATGTAGAATCTGAATTCAGCTCAGAAGATTTAAGCCCGGTTTCGGTTCTCGATGGTGGCCAATTTCTTGTTGATACAGAAATCCCTTCTTCAGAAGAAGATTCAAATTTAGTCAATGAAAATGGTCCAAGTGGTGATGCAAGAAGAAAAAAGACAAGAGAAGGCAAATGTCTTGGATCAAAGAAGAAAGAATTCCACAGAGCAAAGCACATTGGGATGTGGAGTGAGATTTGTAGGCTGACTGAAGCCGAATTGATCGGTTCAAATTGGATCCTACAAAACAAGGGCATGTGGAGTTTTGAAGGTACTTCTGCAGGCATTGGTGCAGATTTCGAGTCACAGATTCTTGGTCAATTATTAGATGAGATTGTTGATCAATTTGCTGACTTTGCCATGGAAATTCAAAATCTGCAAGATTTACAGCCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

388

Amino Acids

43.3

Weight (kDa)

6.87

Isoelectric Point (pI)

68.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 86 - 103 1.4e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 369, 401
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 390
AclWI GGATC 3 cut(s) 916, 997, 1010
AcoI YGGCCR 1 cut(s) 790
AcuI CTGAAG 2 cut(s) 807, 996
AfaI GTAC 2 cut(s) 676, 1039
AfiI CCNNNNNNNGG 2 cut(s) 541, 775
AflII CTTAAG 1 cut(s) 728
AgeI ACCGGT 1 cut(s) 372
AluBI AGCT 4 cut(s) 147, 439, 468, 753
AluI AGCT 4 cut(s) 147, 439, 468, 753
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 916, 997, 1010
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 4 cut(s) 105, 318, 348, 686
AsiGI ACCGGT 1 cut(s) 372
Asp700I GAANNNNTTC 2 cut(s) 652, 923
AspA2I CCTAGG 1 cut(s) 175
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 857
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 1 cut(s) 878
AvaII GGWCC 1 cut(s) 857
AvrII CCTAGG 1 cut(s) 175
BalI TGGCCA 1 cut(s) 792
BamHI GGATCC 1 cut(s) 1002
BbvI GCAGC 4 cut(s) 92, 330, 360, 673
BccI CCATC 2 cut(s) 274, 779
BclI TGATCA 2 cut(s) 166, 1105
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 2 cut(s) 176, 440
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 728
BglII AGATCT 1 cut(s) 246
BisI GCNGC 4 cut(s) 106, 319, 349, 687
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 4 cut(s) 107, 320, 350, 688
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 770
Bme18I GGWCC 1 cut(s) 857
BmgT120I GGNCC 1 cut(s) 857
BmiI GGNNCC 2 cut(s) 208, 1004
BmrFI CCNGG 1 cut(s) 770
BmsI GCATC 4 cut(s) 58, 411, 624, 859
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 770
BsaJI CCNNGG 4 cut(s) 99, 175, 231, 1125
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 775
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 4 cut(s) 99, 175, 231, 1125
BseGI GGATG 4 cut(s) 47, 171, 399, 954
BseLI CCNNNNNNNGG 2 cut(s) 541, 775
BseMII CTCAG 2 cut(s) 478, 768
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 4 cut(s) 92, 330, 360, 673
BsgI GTGCAG 2 cut(s) 100, 1077
Bsh1236I CGCG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 792
BshTI ACCGGT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 373
BsiSI CCGG 2 cut(s) 373, 770
BslI CCNNNNNNNGG 2 cut(s) 541, 775
BsmAI GTCTC 1 cut(s) 520
BsmBI CGTCTC 1 cut(s) 520
BsnI GGCC 1 cut(s) 792
Bsp143I GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 1 cut(s) 390
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 2 cut(s) 477, 767
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 208, 1004
BspMAI CTGCAG 1 cut(s) 1048
BspPI GGATC 3 cut(s) 916, 997, 1010
BspTI CTTAAG 1 cut(s) 728
BsrFI RCCGGY 1 cut(s) 372
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 4 cut(s) 99, 175, 231, 1125
BssMI GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
BssT1I CCWWGG 3 cut(s) 175, 231, 1125
Bst6I CTCTTC 1 cut(s) 547
BstAFI CTTAAG 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 1048
BstDEI CTNAG 2 cut(s) 464, 754
BstDSI CCRYGG 2 cut(s) 99, 1125
BstF5I GGATG 4 cut(s) 47, 171, 399, 954
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 8 cut(s) 169, 217, 249, 410, 911, 990, 1005, 1108
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 1 cut(s) 768
BstSFI CTRYAG 1 cut(s) 1044
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 92, 330, 360, 673
BstX2I RGATCY 2 cut(s) 246, 1002
BstYI RGATCY 2 cut(s) 246, 1002
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 2 cut(s) 99, 1125
BtsCI GGATG 4 cut(s) 47, 171, 399, 954
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 1048
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 857
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 675, 1038
CspAI ACCGGT 1 cut(s) 372
CspCI CAANNNNNGTGG 4 cut(s) 46, 81, 249, 284
CviAII CATG 4 cut(s) 36, 358, 1021, 1126
CviQI GTAC 2 cut(s) 675, 1038
DdeI CTNAG 2 cut(s) 464, 754
DpnI GATC 8 cut(s) 168, 216, 248, 409, 910, 989, 1004, 1107
DpnII GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 3 cut(s) 175, 231, 1125
Eco47I GGWCC 1 cut(s) 857
Eco57I CTGAAG 2 cut(s) 807, 996
EcoRI GAATTC 4 cut(s) 129, 361, 746, 923
EcoT14I CCWWGG 3 cut(s) 175, 231, 1125
ErhI CCWWGG 3 cut(s) 175, 231, 1125
Esp3I CGTCTC 1 cut(s) 520
FaeI CATG 4 cut(s) 39, 361, 1024, 1129
FaiI YATR 8 cut(s) 37, 157, 359, 716, 718, 735, 1022, 1127
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 640, 672
FatI CATG 4 cut(s) 35, 357, 1020, 1125
FauI CCCGC 1 cut(s) 383
FbaI TGATCA 2 cut(s) 166, 1105
FblI GTMKAC 2 cut(s) 369, 401
Fnu4HI GCNGC 4 cut(s) 106, 319, 349, 687
FokI GGATG 4 cut(s) 34, 158, 406, 961
Fsp4HI GCNGC 4 cut(s) 106, 319, 349, 687
FspBI CTAG 2 cut(s) 176, 440
GlaI GCGC 1 cut(s) 94
GluI GCNGC 4 cut(s) 106, 319, 349, 687
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 792
HapII CCGG 2 cut(s) 373, 770
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 95
Hin1II CATG 4 cut(s) 39, 361, 1024, 1129
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 2 cut(s) 370, 402
HindII GTYRAC 2 cut(s) 370, 402
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 9 cut(s) 200, 290, 403, 500, 665, 740, 833, 1067, 1075
HpaII CCGG 2 cut(s) 373, 770
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 2 cut(s) 370, 402
Hpy188I TCNGA 4 cut(s) 166, 745, 757, 826
Hpy188III TCNNGA 7 cut(s) 114, 210, 218, 299, 434, 662, 782
Hpy8I GTNNAC 2 cut(s) 370, 402
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 7 cut(s) 33, 171, 584, 597, 828, 887, 1028
HpyCH4V TGCA 9 cut(s) 71, 81, 108, 138, 689, 872, 1046, 1058, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
HpyF3I CTNAG 2 cut(s) 464, 754
Hsp92II CATG 4 cut(s) 39, 361, 1024, 1129
HspAI GCGC 1 cut(s) 93
Ksp22I TGATCA 2 cut(s) 166, 1105
Kzo9I GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
LpnPI CCDG 9 cut(s) 99, 189, 223, 268, 289, 312, 386, 783, 1032
Lsp1109I GCAGC 4 cut(s) 92, 330, 360, 673
LweI GCATC 4 cut(s) 58, 411, 624, 859
MaeI CTAG 2 cut(s) 176, 440
MaeIII GTNAC 1 cut(s) 1068
MalI GATC 8 cut(s) 168, 216, 248, 409, 910, 989, 1004, 1107
MboI GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 2 cut(s) 246, 1002
MlsI TGGCCA 1 cut(s) 792
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 397, 1076
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 442, 474, 504
Mox20I TGGCCA 1 cut(s) 792
MroXI GAANNNNTTC 2 cut(s) 652, 923
MscI TGGCCA 1 cut(s) 792
MseI TTAA 3 cut(s) 225, 729, 764
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 1 cut(s) 792
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 2 cut(s) 373, 770
MspR9I CCNGG 1 cut(s) 770
MunI CAATTG 1 cut(s) 681
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 1 cut(s) 1125
NdeII GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
NlaIII CATG 4 cut(s) 39, 361, 1024, 1129
NlaIV GGNNCC 2 cut(s) 208, 1004
NmuCI GTSAC 1 cut(s) 1068
NspI RCATGY 1 cut(s) 1024
PdmI GAANNNNTTC 2 cut(s) 652, 923
PfeI GAWTC 7 cut(s) 200, 290, 500, 665, 740, 833, 1075
PinAI ACCGGT 1 cut(s) 372
PkrI GCNGC 4 cut(s) 107, 320, 350, 688
PleI GAGTC 2 cut(s) 397, 1075
PpsI GAGTC 2 cut(s) 397, 1075
PspN4I GGNNCC 2 cut(s) 208, 1004
PspPI GGNCC 1 cut(s) 857
PstI CTGCAG 1 cut(s) 1048
PsuI RGATCY 2 cut(s) 246, 1002
RsaI GTAC 2 cut(s) 676, 1039
RsaNI GTAC 2 cut(s) 675, 1038
RseI CAYNNNNRTG 1 cut(s) 947
SalI GTCGAC 2 cut(s) 368, 400
SaqAI TTAA 3 cut(s) 225, 729, 764
SatI GCNGC 4 cut(s) 106, 319, 349, 687
Sau3AI GATC 8 cut(s) 166, 214, 246, 407, 908, 987, 1002, 1105
Sau96I GGNCC 1 cut(s) 857
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 397, 1076
ScrFI CCNGG 1 cut(s) 770
SetI ASST 5 cut(s) 149, 441, 470, 755, 1039
SfaNI GCATC 4 cut(s) 58, 411, 624, 859
SfcI CTRYAG 1 cut(s) 1044
SinI GGWCC 1 cut(s) 857
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 2 cut(s) 434, 728
SmoI CTYRAG 2 cut(s) 434, 728
SsiI CCGC 1 cut(s) 390
SspMI CTAG 2 cut(s) 176, 440
StyD4I CCNGG 1 cut(s) 768
StyI CCWWGG 3 cut(s) 175, 231, 1125
TaqI TCGA 6 cut(s) 369, 401, 406, 503, 783, 1065
TatI WGTACW 1 cut(s) 674
TfiI GAWTC 7 cut(s) 200, 290, 500, 665, 740, 833, 1075
Tru1I TTAA 3 cut(s) 225, 729, 764
Tru9I TTAA 3 cut(s) 225, 729, 764
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 4 cut(s) 105, 318, 348, 686
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 5 cut(s) 17, 24, 374, 410, 864
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 857
XceI RCATGY 1 cut(s) 1024
XmaJI CCTAGG 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 369, 401
XmnI GAANNNNTTC 2 cut(s) 652, 923
XspI CTAG 2 cut(s) 176, 440
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.