Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Reverse (-)

5184564 .. 5189804

Gene Structure 5241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGTCGTCGGTCGAGTATTTACGTCCAACAATCCACAATAGGTTTTGCTTGAATTTGAATTTGAATGCGTATTACTCCCGCCATGGATTGGGATTCCTCCGCAGTCAATCGAGGGTTTTCAACCAGGAAGCGAGACGGTGCGTTTCGAACACGGCGGTGTTCCCTCTGGTCACGTTGTACGGACAGGGCGGCAGAGCTGTGCCAGTTTCGGACAGGTTCGGCGGCCTCTGGAGGAGCCACGGGGGGTTTCGGACGGTTAGGGCTTCGGCGAGCGGTCAGGACACAGATTCCGGGGAGAAGAGCGAGGCGAATGCGACGGAGAGCCAGGCGGTGAACAATAACCCGCCGAATTCGAACTCGCCGGCTTCTAATCGGCGGCGAGATAGTCATAAGAAAGAGAAATGGTGGTGGTCGAAAGGAGGGAAGTGGCGGTGGCAGCCGATAGTTCAGGCACAAGAAATTGGAATCTTGCTGTTACAATTGGGTATTGTTATTTTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTACCCGGGTCGGAGCCAAGGACACCGACTACGTTCATTAGCGTGCCGTACAGTGATTTTTTGAGCAAGATTAATAGTAACCAGGTGCAGAAGGTTGAGGTTGATGGGGTTCATGTTATGTTTAAGTTGAAGTCTGCTCAGGGTGAGCAAGAAAGTGAAGTGAGTGTTGGTGGGGCGAGCAAGTTTCAGGAATCCGAGGCTTTGGTAAGAAGCGTGGCTCTGACGAAGAGGGTGGTTTACACGACGACAAGGCCAACTGATATCAAGACGCCATATGAGAAGATGCTTGAGAATGAGGTGGAGTTCGGGTCGCCAGATAAGCGGTCTGGTGGATTCTTTAACTCTGCAATGATATCTTTGTTTTATGTTGCTGTGCTTGCATGGCTTCTCCACAGGTTCCCTGTAAACTTTACTCAGAAAACAGCCGGTCAGATTAGGAACAGGAAATCTGGGGGCTCTGCTGGTGCTAAAGCATCTGAACAAGGAGAAGCAATAACCTTTGCTGATGTTGCTGGCGTGGATGAGGCTAAAGAGGAGTTGGAAGAAATTGTGGAATTTCTTCGGAATCCAGACAAATATATACGCCTTGGTGCTCGTCCTCCACGTGGAGTTCTCCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCCAAGGCTGTGGCTGGGGAAGCTGACGTGCCCTTTATAAGTTGCTCTGCTAGTGAGTTTGTAGAGTTGTATGTTGGCATGGGTGCCTCTCGTGTAAGGGATCTATTTGCACGGGCAAAAAAGGAGTCGCCATCTATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGTATTGTCAGCAATGATGAGCGAGAACAAACCTTGAATCAGTTGCTCACTGAGATGGATGGATTTGACAGCAGCTCTGCAGTTATTGTTCTTGGAGCAACTAATCGCGCAGATGTCTTAGACCCAGCACTTCGTCGACCAGGGAGATTTGATCGTGTGGTTATGGTGGAAACACCAGATAGGAGAGGAAGAGAGGAGATTCTAAAGGTGCATGCTACCCAAAAAGAACTTCCTTTGGCAAAAGATGTCTACCTTGGTGACATTGCTTCTATGACTACTGGCTTTACTGGGGCAGATCTCGCAAATTTGGTGAATGAAGCTGCTTTATTGGCTGGAAGACAAAGCAAGTTGGTTGTGGAAAAAATTGATTTTATTCAAGCTGTGGAGAGATCAATAGCTGGTATAGAAAAGAAGACTGCCAAGTTGCAGGGAATTGAGAAGGCTGTTGTTGCACGACATGAAGCTGGTCATGCAGTAGTAGGGACTGCTGTTGCAAGTCTTCTTCCTGGACAGCCACGTGTTGAGAAATTGAGCATATTGCCAAGGTCGGGAGGGGCGTTGGGCTTTACTTATATTCCTCCAACAACTGAAGACAGATATTTACTCTTCATCGATGAGTTGCGTGGACGTTTGGTTACACTTCTTGGAGGACGTGCAGCAGAAGAATTTGTGTATTCAGGTCGTGTCTCAACGGGTGCACTCGATGATATACGACGAGCAACTGACATGGCATACAAAGCAGTAGCTGAGTATGGTCTCAATCAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGAGGAGGTGCTCCTTGGGGAAGGGATCAGGGGCGTCTTGTTGATCTTGTTCAAGGAGAGGTTAAAGCTTTGCTACAATCTGCCTTGGACATAGCTCTTTCGGTTGTACGTGCTAATCCTACTGTTTTGGAGGGCCTTGGTGCTCAGTTGGAAGAAAAAGAAAAGGTAGAAGGCGAAGAGCTACGGAAGTGGTTAAAATTGGTGGTTGCACCAACGGAACTGTCAATCTTCATTAGTGGCAAGCAAGATTATCTTCCCCCGTTGCAGACCATCGAGTCTCTTCTCCCATTGCAGACCGGCTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

832

Amino Acids

90.7

Weight (kDa)

8.71

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	161 - 258	5.5e-06	FtsH Extracellular
AAA	PF00004	380 - 513	2.5e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	538 - 580	2.2e-10	AAA+ lid domain
Peptidase_M41	PF01434	601 - 791	7.5e-35	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1217
AasI	GACNNNNNNGTC	1 cut(s)	2461
AccB1I	GGYRCC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	1504, 1617
AccII	CGCG	1 cut(s)	1476
AclWI	GGATC	2 cut(s)	1287, 2220
AcsI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1672, 2033
AcuI	CTGAAG	1 cut(s)	1977
AcvI	CACGTG	2 cut(s)	1133, 1886
AcyI	GRCGYC	2 cut(s)	797, 2221
AfaI	GTAC	3 cut(s)	179, 578, 2295
AfiI	CCNNNNNNNGG	5 cut(s)	88, 533, 1133, 1163, 1916
AflIII	ACRYGT	1 cut(s)	1885
AgsI	TTSAA	8 cut(s)	52, 58, 64, 121, 658, 1405, 1745, 2240
AjiI	CACGTC	2 cut(s)	1207, 2021
AjnI	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1507, 1873
AjuI	GAANNNNNNNTTGG	4 cut(s)	678, 710, 1581, 1613
AleI	CACNNNNGTG	1 cut(s)	155
Alw21I	GWGCWC	4 cut(s)	1123, 2068, 2200, 2332
Alw26I	GTCTC	4 cut(s)	127, 2059, 2129, 2469
Alw44I	GTGCAC	1 cut(s)	2064
AlwI	GGATC	2 cut(s)	1287, 2220
AlwNI	CAGNNNCTG	1 cut(s)	2114
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	5 cut(s)	223, 515, 779, 2140, 2320
ApaLI	GTGCAC	1 cut(s)	2064
ApeKI	GCWGC	4 cut(s)	436, 1440, 1688, 2024
ApoI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1672, 2033
ArsI	GACNNNNNNTTYG	2 cut(s)	1289, 1321
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspLEI	GCGC	1 cut(s)	1478
AspS9I	GGNCC	3 cut(s)	516, 2141, 2320
AsuC2I	CCSGG	4 cut(s)	292, 519, 534, 535
AsuHPI	GGTGA	4 cut(s)	343, 683, 1637, 1690
AsuII	TTCGAA	2 cut(s)	146, 353
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	1212, 2068
BanI	GGYRCC	1 cut(s)	1262
BanII	GRGCYC	1 cut(s)	986
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	2 cut(s)	1133, 1886
BbsI	GAAGAC	5 cut(s)	1145, 1711, 1787, 1859, 1965
Bbv12I	GWGCWC	4 cut(s)	1123, 2068, 2200, 2332
BbvI	GCAGC	4 cut(s)	448, 1452, 1675, 2036
BccI	CCATC	6 cut(s)	626, 1318, 1352, 1417, 1421, 2465
BceAI	ACGGC	3 cut(s)	168, 559, 1338
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1509, 1875
BcnI	CCSGG	4 cut(s)	292, 519, 534, 535
BcoDI	GTCTC	4 cut(s)	127, 2059, 2129, 2469
BfaI	CTAG	1 cut(s)	1230
BfmI	CTRYAG	2 cut(s)	1446, 2151
BglII	AGATCT	1 cut(s)	1663
BisI	GCNGC	7 cut(s)	190, 223, 377, 437, 1441, 1689, 2025
BlsI	GCNGC	7 cut(s)	191, 224, 378, 438, 1442, 1690, 2026
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	2 cut(s)	1207, 2021
BmgT120I	GGNCC	3 cut(s)	516, 2141, 2320
BmiI	GGNNCC	4 cut(s)	236, 543, 926, 1264
BmrI	ACTGGG	1 cut(s)	1665
BmsI	GCATC	3 cut(s)	801, 1010, 1327
BmuI	ACTGGG	1 cut(s)	1665
BpiI	GAAGAC	5 cut(s)	1145, 1711, 1787, 1859, 1965
BpmI	CTGGAG	2 cut(s)	250, 2208
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	2 cut(s)	146, 353
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	4 cut(s)	292, 519, 534, 535
Bsa29I	ATCGAT	1 cut(s)	1980
BsaAI	YACGTR	3 cut(s)	1133, 1886, 2297
BsaHI	GRCGYC	2 cut(s)	797, 2221
BsaI	GGTCTC	1 cut(s)	2129
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 533, 1133, 1163, 1916
Bse118I	RCCGGY	3 cut(s)	361, 953, 2483
Bse1I	ACTGG	3 cut(s)	203, 1651, 1660
Bse3DI	GCAATG	4 cut(s)	882, 1387, 1629, 2474
BseBI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1509, 1875
BseCI	ATCGAT	1 cut(s)	1980
BseGI	GGATG	3 cut(s)	1054, 1432, 2185
BseLI	CCNNNNNNNGG	5 cut(s)	88, 533, 1133, 1163, 1916
BseMI	GCAATG	4 cut(s)	882, 1387, 1629, 2474
BseMII	CTCAG	5 cut(s)	680, 956, 1410, 2106, 2345
BseNI	ACTGG	3 cut(s)	203, 1651, 1660
BseRI	GAGGAG	4 cut(s)	247, 1076, 1577, 2205
BseSI	GKGCMC	2 cut(s)	1212, 2068
BseXI	GCAGC	4 cut(s)	448, 1452, 1675, 2036
BseYI	CCCAGC	2 cut(s)	1193, 1492
BsgI	GTGCAG	2 cut(s)	635, 2043
Bsh1236I	CGCG	1 cut(s)	1476
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	225, 517, 781, 2142, 2322
BshNI	GGYRCC	1 cut(s)	1262
BshVI	ATCGAT	1 cut(s)	1980
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	4 cut(s)	1123, 2068, 2200, 2332
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	7 cut(s)	291, 362, 514, 519, 534, 954, 2484
BslFI	GGGAC	2 cut(s)	1174, 1864
BslI	CCNNNNNNNGG	5 cut(s)	88, 533, 1133, 1163, 1916
BsmAI	GTCTC	4 cut(s)	127, 2059, 2129, 2469
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	1174, 1864
BsmI	GAATGC	2 cut(s)	70, 316
BsnI	GGCC	5 cut(s)	225, 517, 781, 2142, 2322
Bso31I	GGTCTC	1 cut(s)	2129
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	2 cut(s)	146, 353
Bsp1286I	GDGCHC	6 cut(s)	986, 1123, 1212, 2068, 2200, 2332
Bsp143I	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
Bsp19I	CCATGG	1 cut(s)	82
BspANI	GGCC	5 cut(s)	225, 517, 781, 2142, 2322
BspCNI	CTCAG	5 cut(s)	679, 955, 1411, 2107, 2344
BspDI	ATCGAT	1 cut(s)	1980
BspFNI	CGCG	1 cut(s)	1476
BspLI	GGNNCC	4 cut(s)	236, 543, 926, 1264
BspMAI	CTGCAG	1 cut(s)	1450
BspPI	GGATC	2 cut(s)	1287, 2220
BspQI	GCTCTTC	2 cut(s)	293, 2358
BspT104I	TTCGAA	2 cut(s)	146, 353
BspT107I	GGYRCC	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	2129
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	4 cut(s)	882, 1387, 1629, 2474
BsrFI	RCCGGY	3 cut(s)	361, 953, 2483
BsrI	ACTGG	3 cut(s)	203, 1651, 1660
BssAI	RCCGGY	3 cut(s)	361, 953, 2483
BssMI	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
BssNI	GRCGYC	2 cut(s)	797, 2221
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	9 cut(s)	82, 545, 1114, 1182, 1621, 1910, 2201, 2271, 2323
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1509, 1875
Bst4CI	ACNGT	5 cut(s)	138, 256, 581, 2311, 2409
Bst6I	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1979, 2358, 2472
BstACI	GRCGYC	2 cut(s)	797, 2221
BstBAI	YACGTR	3 cut(s)	1133, 1886, 2297
BstBI	TTCGAA	2 cut(s)	146, 353
BstC8I	GCNNGC	8 cut(s)	271, 363, 572, 706, 906, 1042, 1581, 2429
BstDEI	CTNAG	6 cut(s)	666, 942, 1419, 1486, 2115, 2331
BstDSI	CCRYGG	2 cut(s)	82, 238
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	3 cut(s)	1054, 1432, 2185
BstFNI	CGCG	1 cut(s)	1476
BstHHI	GCGC	1 cut(s)	1478
BstKTI	GATC	6 cut(s)	1282, 1522, 1666, 1760, 2215, 2233
BstMAI	GTCTC	4 cut(s)	127, 2059, 2129, 2469
BstMBI	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1509, 1875
BstNSI	RCATGY	1 cut(s)	1583
BstSFI	CTRYAG	2 cut(s)	1446, 2151
BstSLI	GKGCMC	2 cut(s)	1212, 2068
BstUI	CGCG	1 cut(s)	1476
BstV1I	GCAGC	4 cut(s)	448, 1452, 1675, 2036
BstV2I	GAAGAC	5 cut(s)	1145, 1711, 1787, 1859, 1965
BstX2I	RGATCY	2 cut(s)	1279, 1663
BstXI	CCANNNNNNTGG	1 cut(s)	1189
BstYI	RGATCY	2 cut(s)	1279, 1663
Bsu15I	ATCGAT	1 cut(s)	1980
BsuRI	GGCC	5 cut(s)	225, 517, 781, 2142, 2322
BsuTUI	ATCGAT	1 cut(s)	1980
BtgI	CCRYGG	2 cut(s)	82, 238
BtrI	CACGTC	2 cut(s)	1207, 2021
BtsCI	GGATG	3 cut(s)	1054, 1432, 2185
BtsIMutI	CAGTG	2 cut(s)	586, 1416
Cac8I	GCNNGC	8 cut(s)	271, 363, 572, 706, 906, 1042, 1581, 2429
CaiI	CAGNNNCTG	1 cut(s)	2114
CfoI	GCGC	1 cut(s)	1478
Cfr10I	RCCGGY	3 cut(s)	361, 953, 2483
Cfr13I	GGNCC	3 cut(s)	516, 2141, 2320
Cfr9I	CCCGGG	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	1980
CseI	GACGC	2 cut(s)	805, 2210
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	178, 577, 2294
CviAII	CATG	8 cut(s)	83, 641, 909, 1258, 1580, 1826, 1838, 2095
CviQI	GTAC	3 cut(s)	178, 577, 2294
DdeI	CTNAG	6 cut(s)	666, 942, 1419, 1486, 2115, 2331
DpnI	GATC	6 cut(s)	1281, 1521, 1665, 1759, 2214, 2232
DpnII	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
DrdI	GACNNNNNNGTC	1 cut(s)	2461
DseDI	GACNNNNNNGTC	1 cut(s)	2461
Eam1104I	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1979, 2358, 2472
EarI	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1979, 2358, 2472
Eco130I	CCWWGG	9 cut(s)	82, 545, 1114, 1182, 1621, 1910, 2201, 2271, 2323
Eco24I	GRGCYC	1 cut(s)	986
Eco31I	GGTCTC	1 cut(s)	2129
Eco32I	GATATC	2 cut(s)	790, 882
Eco57I	CTGAAG	1 cut(s)	1977
Eco72I	CACGTG	2 cut(s)	1133, 1886
Eco88I	CYCGRG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoO109I	RGGNCCY	1 cut(s)	2320
EcoRI	GAATTC	2 cut(s)	349, 522
EcoRII	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1507, 1873
EcoRV	GATATC	2 cut(s)	790, 882
EcoT14I	CCWWGG	9 cut(s)	82, 545, 1114, 1182, 1621, 1910, 2201, 2271, 2323
EcoT38I	GRGCYC	1 cut(s)	986
ErhI	CCWWGG	9 cut(s)	82, 545, 1114, 1182, 1621, 1910, 2201, 2271, 2323
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	8 cut(s)	86, 644, 912, 1261, 1583, 1829, 1841, 2098
FalI	AAGNNNNNCTT	2 cut(s)	2424, 2456
FaqI	GGGAC	2 cut(s)	1174, 1864
FatI	CATG	8 cut(s)	82, 640, 908, 1257, 1579, 1825, 1837, 2094
FauI	CCCGC	2 cut(s)	86, 351
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	2 cut(s)	1504, 1617
Fnu4HI	GCNGC	7 cut(s)	190, 223, 377, 437, 1441, 1689, 2025
FokI	GGATG	3 cut(s)	1061, 1439, 2192
FriOI	GRGCYC	1 cut(s)	986
Fsp4HI	GCNGC	7 cut(s)	190, 223, 377, 437, 1441, 1689, 2025
FspBI	CTAG	1 cut(s)	1230
GlaI	GCGC	1 cut(s)	1477
GluI	GCNGC	7 cut(s)	190, 223, 377, 437, 1441, 1689, 2025
GsaI	CCCAGC	2 cut(s)	1197, 1496
GsuI	CTGGAG	2 cut(s)	250, 2208
HaeIII	GGCC	5 cut(s)	225, 517, 781, 2142, 2322
HapII	CCGG	7 cut(s)	291, 362, 514, 519, 534, 954, 2484
HgaI	GACGC	2 cut(s)	805, 2210
HhaI	GCGC	1 cut(s)	1478
Hin1I	GRCGYC	2 cut(s)	797, 2221
Hin1II	CATG	8 cut(s)	86, 644, 912, 1261, 1583, 1829, 1841, 2098
Hin6I	GCGC	1 cut(s)	1476
HinP1I	GCGC	1 cut(s)	1476
HincII	GTYRAC	1 cut(s)	1505
HindII	GTYRAC	1 cut(s)	1505
HindIII	AAGCTT	1 cut(s)	2253
HpaII	CCGG	7 cut(s)	291, 362, 514, 519, 534, 954, 2484
HphI	GGTGA	4 cut(s)	343, 683, 1637, 1690
Hpy166II	GTNNAC	7 cut(s)	334, 766, 934, 1505, 1618, 1994, 2066
Hpy188III	TCNNGA	7 cut(s)	229, 278, 716, 793, 1097, 1917, 2187
Hpy8I	GTNNAC	7 cut(s)	334, 766, 934, 1505, 1618, 1994, 2066
Hpy99I	CGWCG	5 cut(s)	10, 319, 775, 1506, 2085
HpyAV	CCTTC	4 cut(s)	613, 1801, 2202, 2351
HpyCH4III	ACNGT	5 cut(s)	138, 256, 581, 2311, 2409
HpyCH4IV	ACGT	9 cut(s)	22, 173, 560, 1132, 1206, 1885, 1996, 2020, 2296
HpyF3I	CTNAG	6 cut(s)	666, 942, 1419, 1486, 2115, 2331
HpySE526I	ACGT	9 cut(s)	22, 173, 560, 1132, 1206, 1885, 1996, 2020, 2296
Hsp92I	GRCGYC	2 cut(s)	797, 2221
Hsp92II	CATG	8 cut(s)	86, 644, 912, 1261, 1583, 1829, 1841, 2098
HspAI	GCGC	1 cut(s)	1476
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
LguI	GCTCTTC	2 cut(s)	293, 2358
LmnI	GCTCC	5 cut(s)	234, 516, 541, 1463, 2203
Lsp1109I	GCAGC	4 cut(s)	448, 1452, 1675, 2036
LweI	GCATC	3 cut(s)	801, 1010, 1327
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	1 cut(s)	1230
MaeII	ACGT	9 cut(s)	22, 173, 560, 1132, 1206, 1885, 1996, 2020, 2296
MaeIII	GTNAC	6 cut(s)	169, 474, 528, 605, 1625, 2002
MalI	GATC	6 cut(s)	1281, 1521, 1665, 1759, 2214, 2232
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	2 cut(s)	1279, 1663
MhlI	GDGCHC	6 cut(s)	986, 1123, 1212, 2068, 2200, 2332
MlyI	GAGTC	4 cut(s)	1165, 1313, 2192, 2471
MmeI	TCCRAC	5 cut(s)	50, 519, 1047, 1973, 2316
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	1086
MseI	TTAA	5 cut(s)	600, 651, 867, 2250, 2381
MslI	CAYNNNNRTG	3 cut(s)	155, 569, 1421
MspI	CCGG	7 cut(s)	291, 362, 514, 519, 534, 954, 2484
MunI	CAATTG	1 cut(s)	479
Mva1269I	GAATGC	2 cut(s)	70, 316
MvaI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1509, 1875
MvnI	CGCG	1 cut(s)	1476
NaeI	GCCGGC	1 cut(s)	363
NciI	CCSGG	4 cut(s)	292, 519, 534, 535
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	8 cut(s)	86, 644, 912, 1261, 1583, 1829, 1841, 2098
NlaIV	GGNNCC	4 cut(s)	236, 543, 926, 1264
NmuCI	GTSAC	2 cut(s)	169, 1625
NspI	RCATGY	1 cut(s)	1583
NspV	TTCGAA	2 cut(s)	146, 353
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	1583
PciSI	GCTCTTC	2 cut(s)	293, 2358
PcsI	WCGNNNNNNNCGW	2 cut(s)	1129, 1922
PctI	GAATGC	2 cut(s)	70, 316
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1567
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	1873
PkrI	GCNGC	7 cut(s)	191, 224, 378, 438, 1442, 1690, 2026
PleI	GAGTC	4 cut(s)	1165, 1312, 2191, 2470
PmaCI	CACGTG	2 cut(s)	1133, 1886
PmlI	CACGTG	2 cut(s)	1133, 1886
PpsI	GAGTC	4 cut(s)	1165, 1312, 2191, 2470
Ppu21I	YACGTR	3 cut(s)	1133, 1886, 2297
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	1217
Psp6I	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1507, 1873
PspCI	CACGTG	2 cut(s)	1133, 1886
PspFI	CCCAGC	2 cut(s)	1193, 1492
PspGI	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1507, 1873
PspN4I	GGNNCC	4 cut(s)	236, 543, 926, 1264
PspPI	GGNCC	3 cut(s)	516, 2141, 2320
PstI	CTGCAG	1 cut(s)	1450
PstNI	CAGNNNCTG	1 cut(s)	2114
PsuI	RGATCY	2 cut(s)	1279, 1663
RsaI	GTAC	3 cut(s)	179, 578, 2295
RsaNI	GTAC	3 cut(s)	178, 577, 2294
RseI	CAYNNNNRTG	3 cut(s)	155, 569, 1421
SalI	GTCGAC	1 cut(s)	1503
SapI	GCTCTTC	2 cut(s)	293, 2358
SaqAI	TTAA	5 cut(s)	600, 651, 867, 2250, 2381
SatI	GCNGC	7 cut(s)	190, 223, 377, 437, 1441, 1689, 2025
Sau3AI	GATC	6 cut(s)	1279, 1519, 1663, 1757, 2212, 2230
Sau96I	GGNCC	3 cut(s)	516, 2141, 2320
SchI	GAGTC	4 cut(s)	1165, 1313, 2192, 2471
SduI	GDGCHC	6 cut(s)	986, 1123, 1212, 2068, 2200, 2332
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	801, 1010, 1327
SfcI	CTRYAG	2 cut(s)	1446, 2151
SfuI	TTCGAA	2 cut(s)	146, 353
SmaI	CCCGGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	3 cut(s)	155, 569, 1421
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	1583
SspI	AATATT	1 cut(s)	1320
SspMI	CTAG	1 cut(s)	1230
StyI	CCWWGG	9 cut(s)	82, 545, 1114, 1182, 1621, 1910, 2201, 2271, 2323
TaaI	ACNGT	5 cut(s)	138, 256, 581, 2311, 2409
TaiI	ACGT	9 cut(s)	25, 176, 563, 1135, 1209, 1888, 1999, 2023, 2299
TaqI	TCGA	9 cut(s)	12, 110, 146, 353, 413, 1504, 1980, 2070, 2460
TauI	GCSGC	3 cut(s)	192, 225, 379
TfiI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1567
Tru1I	TTAA	5 cut(s)	600, 651, 867, 2250, 2381
Tru9I	TTAA	5 cut(s)	600, 651, 867, 2250, 2381
TscAI	CASTG	2 cut(s)	586, 1423
TseFI	GTSAC	2 cut(s)	169, 1625
TseI	GCWGC	4 cut(s)	436, 1440, 1688, 2024
Tsp45I	GTSAC	2 cut(s)	169, 1625
TspDTI	ATGAA	6 cut(s)	553, 629, 1698, 1842, 1966, 2407
TspGWI	ACGGA	6 cut(s)	195, 332, 516, 1358, 2386, 2417
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	2 cut(s)	586, 1423
Van91I	CCANNNNNTGG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	2064
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1672, 2033
XceI	RCATGY	1 cut(s)	1583
XmaI	CCCGGG	1 cut(s)	533
XmiI	GTMKAC	2 cut(s)	1504, 1617
XmnI	GAANNNNTTC	1 cut(s)	1086
XspI	CTAG	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.