Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Reverse (-)

5926097 .. 5926830

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAACATGAGAAGGTACCCTTTACGAGAACAGAGTCTCAGGAAATTGAGATCGCAATGGTCTCTAAAGGCATTGATACCCTTCCTCTGCCACCACAGTTGCGTCCCTCCTCGTGTGTCTGTGTTTTCTCCAAAAACGAGCATTGTAGTTTGGATTCAAAACAGCGGTCAAAGTCTGCTACAAAACTCTCTGGACTCGTTGTCGCCTCTCTCTTGTTTATGGTTGTAGAAATTATTGGTGGTGTCAAAGCCAACAGCCTTGCAGTACTCACAGATGCAGCCCACTTGCTCACTGATGTTATTGGATTCTCCATTGCTCTTTTCACAGTAATGGCTTCAGGTTGGGAGGCAACATCGTACCAGTCTTTCGGATATCACCGTCTTGAGGTTTTGAGTGCCCTTTTCTCTGTGCAGCTCGTATGGCTGGTATCTGGGATCTTGATCTATGAAGCAGTCGACAGGATCCTTCACAACAAGGAAAAGGTGAATGGGCTACTCATGTTTTCAGTCGCAGCATTTGGGTTTCTTGTCAACCTTATCATGGTCGTGTGGCTTGGTCACGATCACACCCATCACGCATGTGGAGGCTTAGGTCAAGATCATCTCCATGATCACAATCACGATCATCATCATGGTCATAATCACGATCATCATCATCATCATGGAAGAAAGTGCAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

228

Amino Acids

25.16

Weight (kDa)

6.52

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	67 - 192	4.6e-25	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	443, 457, 470
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	18, 267, 359
AfiI	CCNNNNNNNGG	2 cut(s)	385, 541
AgsI	TTSAA	1 cut(s)	159
AhdI	GACNNNNNGTC	1 cut(s)	200
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	42, 67
AlwI	GGATC	3 cut(s)	443, 457, 470
ApeKI	GCWGC	3 cut(s)	278, 412, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp718I	GGTACC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	368, 496
BaeGI	GKGCMC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	290, 424, 524
BccI	CCATC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	42, 67
BisI	GCNGC	3 cut(s)	279, 413, 513
BlsI	GCNGC	3 cut(s)	280, 414, 514
BmcAI	AGTACT	1 cut(s)	267
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	18, 464
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	404
BsaBI	GATNNNNATC	4 cut(s)	440, 615, 627, 651
BsaI	GGTCTC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 541
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	2 cut(s)	63, 312
Bse8I	GATNNNNATC	4 cut(s)	440, 615, 627, 651
BseJI	GATNNNNATC	4 cut(s)	440, 615, 627, 651
BseLI	CCNNNNNNNGG	2 cut(s)	385, 541
BseMI	GCAATG	2 cut(s)	63, 312
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	290, 424, 524
BsgI	GTGCAG	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	385, 541
BsmAI	GTCTC	2 cut(s)	42, 67
BsmFI	GGGAC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	18, 464
BspPI	GGATC	3 cut(s)	443, 457, 470
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	63, 312
BsrI	ACTGG	1 cut(s)	361
BssMI	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst4CI	ACNGT	3 cut(s)	99, 328, 380
BstDEI	CTNAG	2 cut(s)	39, 589
BstKTI	GATC	9 cut(s)	54, 438, 444, 465, 565, 601, 613, 625, 649
BstMAI	GTCTC	2 cut(s)	42, 67
BstMBI	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	290, 424, 524
BstX2I	RGATCY	2 cut(s)	435, 462
BstYI	RGATCY	2 cut(s)	435, 462
BtsIMutI	CAGTG	1 cut(s)	291
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	17, 266, 358
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	7 cut(s)	8, 499, 541, 579, 608, 632, 662
CviJI	RGCY	9 cut(s)	251, 258, 281, 335, 415, 424, 493, 553, 588
CviKI_1	RGCY	9 cut(s)	251, 258, 281, 335, 415, 424, 493, 553, 588
CviQI	GTAC	3 cut(s)	17, 266, 358
DdeI	CTNAG	2 cut(s)	39, 589
DpnI	GATC	9 cut(s)	53, 437, 443, 464, 564, 600, 612, 624, 648
DpnII	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
DriI	GACNNNNNGTC	1 cut(s)	200
Eam1105I	GACNNNNNGTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	374
FaeI	CATG	7 cut(s)	11, 502, 544, 582, 611, 635, 665
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	7 cut(s)	7, 498, 540, 578, 607, 631, 661
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	279, 413, 513
Fsp4HI	GCNGC	3 cut(s)	279, 413, 513
GluI	GCNGC	3 cut(s)	279, 413, 513
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	11, 502, 544, 582, 611, 635, 665
HincII	GTYRAC	2 cut(s)	457, 532
HindII	GTYRAC	2 cut(s)	457, 532
HinfI	GANTC	4 cut(s)	35, 155, 195, 306
HphI	GGTGA	2 cut(s)	368, 496
Hpy166II	GTNNAC	2 cut(s)	457, 532
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	8 cut(s)	41, 192, 383, 439, 560, 596, 620, 644
Hpy8I	GTNNAC	2 cut(s)	457, 532
HpyAV	CCTTC	3 cut(s)	7, 92, 476
HpyCH4III	ACNGT	3 cut(s)	99, 328, 380
HpyCH4V	TGCA	4 cut(s)	263, 278, 412, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	39, 589
Hsp92II	CATG	7 cut(s)	11, 502, 544, 582, 611, 635, 665
KpnI	GGTACC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
LpnPI	CCDG	7 cut(s)	26, 177, 324, 374, 410, 417, 445
Lsp1109I	GCAGC	3 cut(s)	290, 424, 524
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	9 cut(s)	53, 437, 443, 464, 564, 600, 612, 624, 648
MboI	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
MboII	GAAGA	1 cut(s)	678
MflI	RGATCY	2 cut(s)	435, 462
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	45, 231
MlyI	GAGTC	2 cut(s)	44, 189
MnlI	CCTC	7 cut(s)	96, 118, 121, 217, 340, 379, 578
MslI	CAYNNNNRTG	6 cut(s)	329, 545, 579, 606, 630, 660
MspA1I	CMGCKG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
NlaIII	CATG	7 cut(s)	11, 502, 544, 582, 611, 635, 665
NlaIV	GGNNCC	2 cut(s)	18, 464
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	582
OliI	CACNNNNGTG	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	155, 306
PkrI	GCNGC	3 cut(s)	280, 414, 514
PleI	GAGTC	2 cut(s)	43, 189
PpsI	GAGTC	2 cut(s)	43, 189
PspN4I	GGNNCC	2 cut(s)	18, 464
PsuI	RGATCY	2 cut(s)	435, 462
RsaI	GTAC	3 cut(s)	18, 267, 359
RsaNI	GTAC	3 cut(s)	17, 266, 358
RseI	CAYNNNNRTG	6 cut(s)	329, 545, 579, 606, 630, 660
SalI	GTCGAC	1 cut(s)	455
SatI	GCNGC	3 cut(s)	279, 413, 513
Sau3AI	GATC	9 cut(s)	51, 435, 441, 462, 562, 598, 610, 622, 646
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	2 cut(s)	44, 189
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	18, 343, 390, 417, 486, 537, 595
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	6 cut(s)	329, 545, 579, 606, 630, 660
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	45, 231
SsiI	CCGC	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	99, 328, 380
TaqI	TCGA	1 cut(s)	456
TasI	AATT	2 cut(s)	45, 231
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	155, 306
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	3 cut(s)	278, 412, 512
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	298
XceI	RCATGY	1 cut(s)	582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.