pycom11g09950

respiratory burst oxidase homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010309
Physical Location & Seq
Forward (+)
8336070 .. 8337178
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09950.1

Sequence Viewer

Length: 858 bp
ATGTGGCAGTTGGAAACCCTACTGAGGGGAATGGCAGTGTCCGAAGATAACCAAAAAATCGGAAAGAGAACCCAATCCCTCACGAAATCCATGATTCCCAGAAGTTACAGAACTCCCATTAGCAAATTCCTATCTACAACTGCAGAACTTGTGCAAGAAAACTGGAAGAAAATATGGATTGTGACATTGTGGTTAGCTATCAACATAGGCCTCTTTACTTGGAAATACCGCCAATACCAGAAGCATGGATTATACAAACTCATGGGTACATGCCTCTGCATTGCAAAGGGCTCTGCTGAGACTCTCAAGTTCAATATGGCTCTCATTCTCATTCCAGTTTGTAGGGGAACTCTTACCGCAATTCGGTCATCATTTCTCAGCAACCTAATCCCTTTTGATGAAAATATCAAATTCCATAAGTTGATTGCACTGGGAATTGTAATTTCGACTTCTCTACATGCAGGTTTACACATTACTTGTGATTTCCCAAGATTGATAACATCCCGGGAAGATGAGTTCATGGATGTTGCTGGGACATATTTCAATTATAAGCAGCCAACTTACATGGACTTGGTTAATAGTATTCCAGGAATAACCGGGATTCTCATGACGGTTCTGATGATGTTTTCGTTCACACTGGCATTAAATGTAATGAGAAAAAATGTCAACTTACCGTGGCCACTCAACAAATTGTCAGGGTTCAATTCTTTCTGGTATGCACATCATTTGCTTGTGTTGGTGTATATGCTCTTTGTCATGCATGGTTACTTCCTAATTTTCACGAGCGACTGGCACAAGAAGACGGTCAGTGCTCGAAACTTTTACCATTCACTGAAATATCTCAGAAACTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04624 map04013 map04624
Pfam Domains
Protein Families
EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

286

Amino Acids

33.04

Weight (kDa)

9.77

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferric_reduct PF01794 108 - 252 2e-12 Ferric reductase like transmembrane component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 2 cut(s) 229, 357
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 2 cut(s) 125, 410
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 24, 25, 363
AgsI TTSAA 3 cut(s) 313, 544, 703
AjnI CCWGG 1 cut(s) 586
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 2 cut(s) 208, 677
ApeKI GCWGC 1 cut(s) 553
ApoI RAATTY 2 cut(s) 125, 410
AsuC2I CCSGG 3 cut(s) 505, 506, 598
AvaI CYCGRG 1 cut(s) 504
BalI TGGCCA 1 cut(s) 679
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 806
Bbv12I GWGCWC 1 cut(s) 814
BbvI GCAGC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 3 cut(s) 505, 506, 598
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 555
Bme1390I CCNGG 4 cut(s) 505, 506, 588, 598
BmeT110I CYCGRG 1 cut(s) 504
BmrFI CCNGG 4 cut(s) 505, 506, 588, 598
BmrI ACTGGG 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 3 cut(s) 505, 506, 598
BsaJI CCNNGG 2 cut(s) 504, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 25, 363
Bse1I ACTGG 5 cut(s) 167, 335, 435, 642, 794
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 504, 674
BseGI GGATG 2 cut(s) 500, 529
BseLI CCNNNNNNNGG 3 cut(s) 24, 25, 363
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 14, 288, 391, 856
BseNI ACTGG 5 cut(s) 167, 335, 435, 642, 794
BseXI GCAGC 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 210, 679
BsiHKAI GWGCWC 1 cut(s) 814
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 505, 597
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 3 cut(s) 24, 25, 363
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 2 cut(s) 210, 679
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 2 cut(s) 293, 814
BspACI CCGC 2 cut(s) 229, 357
BspANI GGCC 2 cut(s) 210, 679
BspCNI CTCAG 4 cut(s) 15, 289, 390, 855
BspHI TCATGA 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 5 cut(s) 167, 335, 435, 642, 794
BssECI CCNNGG 2 cut(s) 504, 674
BssSI CACGAG 1 cut(s) 781
Bst2BI CACGAG 1 cut(s) 781
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 613, 675, 805
BstDEI CTNAG 4 cut(s) 23, 297, 377, 842
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 500, 529
BstMAI GTCTC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 273, 461
BstSCI CCNGG 4 cut(s) 503, 504, 586, 596
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 806
BstXI CCANNNNNNTGG 1 cut(s) 245
BsuRI GGCC 2 cut(s) 210, 679
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 2 cut(s) 500, 529
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 5 cut(s) 42, 428, 635, 814, 830
BveI ACCTGC 1 cut(s) 452
CciI TCATGA 1 cut(s) 606
Cfr9I CCCGGG 1 cut(s) 504
Csp6I GTAC 1 cut(s) 267
CviJI RGCY 6 cut(s) 197, 210, 291, 320, 556, 679
CviKI_1 RGCY 6 cut(s) 197, 210, 291, 320, 556, 679
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 4 cut(s) 23, 297, 377, 842
EaeI YGGCCR 1 cut(s) 677
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 293
FaqI GGGAC 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 554
FokI GGATG 2 cut(s) 487, 536
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 554
GluI GCNGC 1 cut(s) 554
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 210, 679
HapII CCGG 2 cut(s) 505, 597
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 3 cut(s) 94, 301, 601
HpaII CCGG 2 cut(s) 505, 597
Hpy166II GTNNAC 3 cut(s) 467, 633, 667
Hpy188I TCNGA 4 cut(s) 43, 62, 618, 845
Hpy188III TCNNGA 3 cut(s) 82, 607, 781
Hpy8I GTNNAC 3 cut(s) 467, 633, 667
HpyCH4III ACNGT 3 cut(s) 613, 675, 805
HpyCH4V TGCA 8 cut(s) 143, 154, 279, 284, 428, 461, 719, 760
HpyF3I CTNAG 4 cut(s) 23, 297, 377, 842
Lsp1109I GCAGC 1 cut(s) 565
MaeIII GTNAC 3 cut(s) 104, 181, 764
MboII GAAGA 4 cut(s) 56, 178, 521, 811
MhlI GDGCHC 2 cut(s) 293, 814
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 9 cut(s) 125, 360, 410, 435, 441, 544, 689, 703, 774
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 4 cut(s) 18, 89, 221, 284
Mox20I TGGCCA 1 cut(s) 679
Mph1103I ATGCAT 1 cut(s) 762
MscI TGGCCA 1 cut(s) 679
MseI TTAA 2 cut(s) 576, 644
Msp20I TGGCCA 1 cut(s) 679
MspI CCGG 2 cut(s) 505, 597
MspR9I CCNGG 4 cut(s) 505, 506, 588, 598
MvaI CCWGG 1 cut(s) 588
NciI CCSGG 3 cut(s) 505, 506, 598
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 2 cut(s) 273, 461
PagI TCATGA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 210
PfeI GAWTC 2 cut(s) 94, 601
PfoI TCCNGGA 1 cut(s) 586
PkrI GCNGC 1 cut(s) 555
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 586
PstI CTGCAG 1 cut(s) 145
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 576, 644
SatI GCNGC 1 cut(s) 554
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 4 cut(s) 505, 506, 588, 598
SduI GDGCHC 2 cut(s) 293, 814
SetI ASST 3 cut(s) 199, 387, 466
SfcI CTRYAG 1 cut(s) 141
SmaI CCCGGG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 9 cut(s) 125, 360, 410, 435, 441, 544, 689, 703, 774
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 2 cut(s) 229, 357
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 4 cut(s) 503, 504, 586, 596
TaaI ACNGT 3 cut(s) 613, 675, 805
TaqI TCGA 2 cut(s) 446, 814
TaqII GACCGA 1 cut(s) 354
TasI AATT 9 cut(s) 125, 360, 410, 435, 441, 544, 689, 703, 774
TfiI GAWTC 2 cut(s) 94, 601
Tru1I TTAA 2 cut(s) 576, 644
Tru9I TTAA 2 cut(s) 576, 644
TscAI CASTG 5 cut(s) 42, 435, 642, 814, 837
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 414, 508
TspMI CCCGGG 1 cut(s) 504
TspRI CASTG 5 cut(s) 42, 435, 642, 814, 837
XapI RAATTY 2 cut(s) 125, 410
XceI RCATGY 2 cut(s) 273, 461
XmaI CCCGGG 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.