Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010309

Physical Location & Seq

Genomic Coordinates Forward (+)

42572955 .. 42576897

Gene Structure 3943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0345600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATGAGACGCCAGCAGGCGCAGTACGCCGGCGATTCAGGCGGCGCCAATTCGTATGGTGGCGGAGGCGGTGGCGCTGCGGCAGCTTCAATGCACCACCACCACCATCATCATCAGCAGCAGCAGCCGAGTAGTGTTGGTGCTAGTGATTTTGAAGGACGACTCGAAGCGTTCACACCCGAGAGGGATAGCAATCCTAATCCGTACGCTACTTCTTCCAAACCAGAGGCCCAGTGGAGATGGGAAAGAGATGCATCCAATTCCAAAGCCTCCAATCCATTGACACCTCACATGTTTAGTGAAGGTCAAGTGGGTGATACATCTAGATCCTATTTCCAGGGTCAAAGGTCCGATCCAAAACATGCTTTAGAGACACAGAGCAACAGCGATCCCCGATCTCAACCTCATATTGAAGATATGGACCTTGGGTACGAGGATAAGCCTTCGTCACAGTCCTTTGAAGTTCTGGAGCAGAAATTCCTTGATGACATTAGGAAACTAACCAAGGAACAGAATGATGCTGAGGATGCAGAAAATGCTAGACACAGAGAGAAAATTGGTACAATCAATGCTCAGTATGAAGAACAATTAGCATCACTACGGTGCCAGCATGCTGGCCGTAGAGATGATTTACTTAAGAGGGAATCAAATGCCCGGCAGCATCAATACCAGCAATCCATGATGGATCGTTACTCTAAAAGCAGCATGGGCTCCTCCGATCTTCATGGTTACAGTGGAATTGCGGCCTCAGCTACAGCTGGCGATACACGCAGAGGCTACGAAACTGACCAATATGATTCTTACAGAGAGCGGGCTCGATTTCTTGGGGGCTCCCGTGATCATGGGTTTGAGCCTAGGGGACCATATCCGGGAGGGCGTGTTTATGATACTGGCTCACGTTATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04624 map04013 map04624

Pfam Domains

Protein Families

EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

302

Amino Acids

33.92

Weight (kDa)

6.1

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45810 AT5G60010
fragaria_vesca	FvH4_3g34420
malus_domestica	MD03G1106300.v1.1 MD11G1118400.v1.1
prunus_persica	Prupe.6G088800_v2.0.a1 Prupe.6G088800_v2.0.a1
pyrus_communis	pycom03g08540 pycom11g09950
rosa_chinensis	RchiOBHm_Chr5g0062021
rosa_laevigata	RLG00000035526
rosa_multiflora	Rmu_sc0002296.1_g000006 Rmu_sc0017669.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018690
rosa_rugosa	Rorug05G0345500 Rorug05G0345600
rosa_samantha	Rh5AG406800 Rh5BG420200 Rh5CG444300 Rh5DG435600
rosa_wichuraiana	Rw5G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	44, 603
AccBSI	CCGCTC	1 cut(s)	811
AciI	CCGC	6 cut(s)	42, 63, 69, 80, 743, 811
AclWI	GGATC	4 cut(s)	321, 347, 383, 693
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	476
AcyI	GRCGYC	2 cut(s)	10, 45
AfaI	GTAC	4 cut(s)	26, 206, 431, 562
AfiI	CCNNNNNNNGG	1 cut(s)	869
AflII	CTTAAG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	90, 155, 413, 461
AjnI	CCWGG	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	601
AluBI	AGCT	3 cut(s)	86, 752, 758
AluI	AGCT	3 cut(s)	86, 752, 758
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	4 cut(s)	321, 347, 383, 693
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	228, 616, 744
ApeKI	GCWGC	7 cut(s)	77, 83, 118, 121, 124, 658, 702
ApoI	RAATTY	1 cut(s)	476
AspA2I	CCTAGG	1 cut(s)	854
AspLEI	GCGC	3 cut(s)	22, 47, 77
AspS9I	GGNCC	4 cut(s)	229, 348, 421, 860
AsuC2I	CCSGG	2 cut(s)	655, 870
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	348, 421, 860
AvrII	CCTAGG	1 cut(s)	854
BanI	GGYRCC	2 cut(s)	44, 603
BanII	GRGCYC	3 cut(s)	713, 817, 833
BbvCI	CCTCAGC	2 cut(s)	522, 748
BbvI	GCAGC	7 cut(s)	64, 95, 130, 133, 136, 670, 714
BccI	CCATC	3 cut(s)	114, 234, 676
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	2 cut(s)	655, 870
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	4 cut(s)	144, 324, 540, 855
BfmI	CTRYAG	1 cut(s)	753
BfoI	RGCGCY	2 cut(s)	48, 78
BfrI	CTTAAG	1 cut(s)	635
BlnI	CCTAGG	1 cut(s)	854
Bme1390I	CCNGG	3 cut(s)	338, 655, 870
Bme18I	GGWCC	3 cut(s)	348, 421, 860
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	229, 348, 421, 860
BmiI	GGNNCC	5 cut(s)	46, 605, 712, 832, 861
BmrFI	CCNGG	3 cut(s)	338, 655, 870
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	6 cut(s)	241, 263, 508, 517, 602, 670
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	2 cut(s)	522, 748
BpuMI	CCSGG	2 cut(s)	655, 870
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	10, 45
BsaJI	CCNNGG	4 cut(s)	337, 424, 504, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	1 cut(s)	869
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	232, 895
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	4 cut(s)	337, 424, 504, 854
BseGI	GGATG	2 cut(s)	254, 532
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	869
BseMII	CTCAG	3 cut(s)	513, 587, 762
BseNI	ACTGG	2 cut(s)	232, 895
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	7 cut(s)	64, 95, 130, 133, 136, 670, 714
BshFI	GGCC	3 cut(s)	230, 618, 746
BshNI	GGYRCC	2 cut(s)	44, 603
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	30, 655, 869
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	1 cut(s)	869
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	3 cut(s)	230, 618, 746
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	713, 817, 833
Bsp143I	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
BspACI	CCGC	6 cut(s)	42, 63, 69, 80, 743, 811
BspANI	GGCC	3 cut(s)	230, 618, 746
BspCNI	CTCAG	3 cut(s)	514, 586, 761
BspLI	GGNNCC	5 cut(s)	46, 605, 712, 832, 861
BspPI	GGATC	4 cut(s)	321, 347, 383, 693
BspT107I	GGYRCC	2 cut(s)	44, 603
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	811
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	232, 895
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	4 cut(s)	337, 424, 504, 854
BssMI	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
BssNI	GRCGYC	2 cut(s)	10, 45
BssT1I	CCWWGG	3 cut(s)	424, 504, 854
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	453, 603, 734
BstACI	GRCGYC	2 cut(s)	10, 45
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	8 cut(s)	14, 18, 31, 608, 612, 616, 760, 813
BstDEI	CTNAG	3 cut(s)	522, 573, 748
BstF5I	GGATG	2 cut(s)	254, 532
BstH2I	RGCGCY	2 cut(s)	48, 78
BstHHI	GCGC	3 cut(s)	22, 47, 77
BstKTI	GATC	7 cut(s)	329, 355, 391, 398, 688, 721, 841
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 39, 83, 124, 527, 536, 708, 749, 768
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	3 cut(s)	295, 365, 614
BstSCI	CCNGG	3 cut(s)	336, 653, 868
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	7 cut(s)	64, 95, 130, 133, 136, 670, 714
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	230, 618, 746
BtsCI	GGATG	2 cut(s)	254, 532
BtsIMutI	CAGTG	2 cut(s)	239, 739
Cac8I	GCNNGC	8 cut(s)	14, 18, 31, 608, 612, 616, 760, 813
CfoI	GCGC	3 cut(s)	22, 47, 77
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	229, 348, 421, 860
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	4 cut(s)	25, 205, 430, 561
CviAII	CATG	7 cut(s)	292, 362, 611, 679, 706, 725, 842
CviQI	GTAC	4 cut(s)	25, 205, 430, 561
DdeI	CTNAG	3 cut(s)	522, 573, 748
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	7 cut(s)	328, 354, 390, 397, 687, 720, 840
DpnII	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
EaeI	YGGCCR	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	3 cut(s)	424, 504, 854
Eco24I	GRGCYC	3 cut(s)	713, 817, 833
Eco47I	GGWCC	3 cut(s)	348, 421, 860
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	3 cut(s)	424, 504, 854
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	3 cut(s)	713, 817, 833
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	424, 504, 854
FaeI	CATG	7 cut(s)	295, 365, 614, 682, 709, 728, 845
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	7 cut(s)	291, 361, 610, 678, 705, 724, 841
FauI	CCCGC	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	838
FokI	GGATG	2 cut(s)	241, 539
FriOI	GRGCYC	3 cut(s)	713, 817, 833
FspBI	CTAG	4 cut(s)	144, 324, 540, 855
GlaI	GCGC	3 cut(s)	21, 46, 76
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	2 cut(s)	48, 78
HaeIII	GGCC	3 cut(s)	230, 618, 746
HapII	CCGG	3 cut(s)	30, 655, 869
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	3 cut(s)	22, 47, 77
Hin1I	GRCGYC	2 cut(s)	10, 45
Hin1II	CATG	7 cut(s)	295, 365, 614, 682, 709, 728, 845
Hin6I	GCGC	3 cut(s)	20, 45, 75
HinP1I	GCGC	3 cut(s)	20, 45, 75
HinfI	GANTC	4 cut(s)	35, 162, 644, 797
HpaII	CCGG	3 cut(s)	30, 655, 869
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	352, 718
Hpy188III	TCNNGA	2 cut(s)	324, 467
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	3 cut(s)	149, 296, 453
HpyCH4III	ACNGT	3 cut(s)	453, 603, 734
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	3 cut(s)	94, 254, 530
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 39, 83, 124, 527, 536, 708, 749, 768
HpyF3I	CTNAG	3 cut(s)	522, 573, 748
HpySE526I	ACGT	1 cut(s)	898
Hsp92I	GRCGYC	2 cut(s)	10, 45
Hsp92II	CATG	7 cut(s)	295, 365, 614, 682, 709, 728, 845
HspAI	GCGC	3 cut(s)	20, 45, 75
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
LmnI	GCTCC	3 cut(s)	469, 716, 836
Lsp1109I	GCAGC	7 cut(s)	64, 95, 130, 133, 136, 670, 714
LweI	GCATC	6 cut(s)	241, 263, 508, 517, 602, 670
MaeI	CTAG	4 cut(s)	144, 324, 540, 855
MaeII	ACGT	1 cut(s)	898
MaeIII	GTNAC	3 cut(s)	447, 689, 728
MalI	GATC	7 cut(s)	328, 354, 390, 397, 687, 720, 840
MbiI	CCGCTC	1 cut(s)	811
MboI	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
MboII	GAAGA	4 cut(s)	207, 425, 593, 713
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	3 cut(s)	713, 817, 833
MluCI	AATT	6 cut(s)	49, 259, 476, 555, 587, 738
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	256
MreI	CGCCGGCG	1 cut(s)	29
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	601
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	3 cut(s)	30, 655, 869
MspR9I	CCNGG	3 cut(s)	338, 655, 870
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	9 cut(s)	26, 39, 83, 124, 527, 536, 708, 749, 768
NaeI	GCCGGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	655, 870
NdeII	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	7 cut(s)	295, 365, 614, 682, 709, 728, 845
NlaIV	GGNNCC	5 cut(s)	46, 605, 712, 832, 861
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	3 cut(s)	295, 365, 614
OliI	CACNNNNGTG	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	614
PciI	ACATGT	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	35, 644, 797
Pfl23II	CGTACG	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	868
PleI	GAGTC	1 cut(s)	156
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	5 cut(s)	46, 605, 712, 832, 861
PspPI	GGNCC	4 cut(s)	229, 348, 421, 860
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	4 cut(s)	26, 206, 431, 562
RsaNI	GTAC	4 cut(s)	25, 205, 430, 561
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	636
Sau3AI	GATC	7 cut(s)	326, 352, 388, 395, 685, 718, 838
Sau96I	GGNCC	4 cut(s)	229, 348, 421, 860
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	338, 655, 870
SduI	GDGCHC	3 cut(s)	713, 817, 833
SetI	ASST	9 cut(s)	88, 289, 307, 350, 406, 426, 754, 760, 901
SfaNI	GCATC	6 cut(s)	241, 263, 508, 517, 602, 670
SfcI	CTRYAG	1 cut(s)	753
SfoI	GGCGCC	1 cut(s)	46
SgrAI	CRCCGGYG	1 cut(s)	29
SinI	GGWCC	3 cut(s)	348, 421, 860
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	6 cut(s)	49, 259, 476, 555, 587, 738
SsiI	CCGC	6 cut(s)	42, 63, 69, 80, 743, 811
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	4 cut(s)	144, 324, 540, 855
StyD4I	CCNGG	3 cut(s)	336, 653, 868
StyI	CCWWGG	3 cut(s)	424, 504, 854
TaaI	ACNGT	3 cut(s)	453, 603, 734
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	2 cut(s)	165, 817
TasI	AATT	6 cut(s)	49, 259, 476, 555, 587, 738
TauI	GCSGC	3 cut(s)	45, 83, 746
TfiI	GAWTC	3 cut(s)	35, 644, 797
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	239, 739
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	7 cut(s)	77, 83, 118, 121, 124, 658, 702
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	594, 713
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	239, 739
Vha464I	CTTAAG	1 cut(s)	635
VpaK11BI	GGWCC	3 cut(s)	348, 421, 860
XapI	RAATTY	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	323
XceI	RCATGY	3 cut(s)	295, 365, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmaJI	CCTAGG	1 cut(s)	854
XspI	CTAG	4 cut(s)	144, 324, 540, 855
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.