pycom11g11220

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013018
Physical Location & Seq
Reverse (-)
9773365 .. 9774312
948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGGAACCACCATCTTTTACTCTCTATATAAATAACATTCTCCACGCTTTCCACGCTTCCAGCAAAACCCAACTTCCATTTCCTCCGCATTTTTCTAGATCCAGTGTATCGCTCCTCTCCCTGCTTTTTTACTCCACCTACGTGTCCAGATCTGAATCCGCCTCTTCCCTTCCCCTTGAATCTCGGCCGTCTCCTTTTCCCTTTCCCGAGGTCTCCTCTTTTCAAATTCAGATCTCCTCCACTCCATTTCAAAACCGCTTCCCAAACTCTCAATTTCCTCGCTTCTCACTTTCCAATCAGATCCACATTTTCTTGGGAAACAAACACCTCGAAGCGCCGCCGCCGCCGCCTCCTCTTTCTCCTCCTTCAATAATGGCGAGGTTCATCGAACTCCTCTCTGCTTTGCTTCTTGCATTTCTCCTAGTCCAATTCAGCACCGCCGCATCCTCTTCCTCTCCGCCAGTGCCCTCCCCGACTCCGTCGCCGCAACCCGCTGCCGATTCGCCGTCTCACATATCTCCGTCGCCGATTTCCCTCACTCCATCTCCGTCCAACACACCGGCGCACTCACCAATTCCTTCTTCTCCTCCCGCGCCGCCGCAGTCGACTCCATCGTCGTCGCCTGACAGCGAGCCTTCTGTTCCCGCTCCGGCGCCGTCGGATCCTAGCGACAACAACAATGACATGAACGCCGACGACAACGGAGCTGAGAACTCCTCCGGGGGAGGAATGAGCGGGGGAAAGAAGGCGGGGATCGCGTCTGGAGTTATCGTCGGAGTCGGTTTGGTAGGGCTCGGAGGATTTGTGTACAGGAAGCGTCAAGATAACATACGTCGATCTCAGTACGGTTACGATGCCAGGAGAGAGTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

30.87

Weight (kDa)

6.65

Isoelectric Point (pI)

99.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 652
AccBSI CCGCTC 2 cut(s) 647, 735
AccI GTMKAC 1 cut(s) 605
AccII CGCG 2 cut(s) 593, 758
AclWI GGATC 5 cut(s) 93, 295, 656, 669, 761
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 653
AfaI GTAC 2 cut(s) 809, 845
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 179, 224, 251, 369
AjnI CCWGG 1 cut(s) 857
AjuI GAANNNNNNNTTGG 4 cut(s) 63, 95, 565, 597
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 1 cut(s) 707
AluI AGCT 1 cut(s) 707
Alw26I GTCTC 3 cut(s) 195, 217, 513
AlwI GGATC 5 cut(s) 93, 295, 656, 669, 761
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 225
AspLEI GCGC 4 cut(s) 337, 565, 595, 655
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 468
BamHI GGATCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 795
BbvI GCAGC 1 cut(s) 481
BccI CCATC 3 cut(s) 19, 550, 619
BceAI ACGGC 3 cut(s) 172, 490, 640
BciT130I CCWGG 1 cut(s) 859
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 3 cut(s) 195, 217, 513
BfaI CTAG 3 cut(s) 96, 422, 666
BfoI RGCGCY 2 cut(s) 338, 656
BglII AGATCT 2 cut(s) 149, 231
BisI GCNGC 9 cut(s) 338, 341, 344, 347, 441, 485, 495, 596, 599
BlsI GCNGC 9 cut(s) 339, 342, 345, 348, 442, 486, 496, 597, 600
Bme1390I CCNGG 2 cut(s) 721, 859
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 3 cut(s) 6, 654, 663
BmrFI CCNGG 2 cut(s) 721, 859
BmsI GCATC 2 cut(s) 452, 844
BplI GAGNNNNNCTC 5 cut(s) 200, 232, 701, 733, 855
BpmI CTGGAG 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 721
BsaAI YACGTR 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 207, 720
BsaXI ACNNNNNCTCC 6 cut(s) 529, 559, 756, 786, 789, 819
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 102, 461
Bse8I GATNNNNATC 1 cut(s) 154
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 2 cut(s) 207, 720
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 154
BseMII CTCAG 2 cut(s) 699, 854
BseNI ACTGG 2 cut(s) 102, 461
BseRI GAGGAG 8 cut(s) 104, 205, 226, 342, 351, 383, 576, 706
BseSI GKGCMC 1 cut(s) 468
BseX3I CGGCCG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 481
Bsh1236I CGCG 2 cut(s) 593, 758
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 560, 650, 720
BsmAI GTCTC 3 cut(s) 195, 217, 513
BsmBI CGTCTC 2 cut(s) 195, 513
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 468, 795
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 700, 853
BspFNI CGCG 2 cut(s) 593, 758
BspLI GGNNCC 3 cut(s) 6, 654, 663
BspPI GGATC 5 cut(s) 93, 295, 656, 669, 761
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 2 cut(s) 647, 735
BsrFI RCCGGY 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 2 cut(s) 102, 461
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 207, 720
BssMI GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
BssNI GRCGYC 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 1 cut(s) 848
Bst6I CTCTTC 2 cut(s) 169, 454
BstACI GRCGYC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 807
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 708, 840
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 2 cut(s) 593, 758
BstH2I RGCGCY 2 cut(s) 338, 656
BstHHI GCGC 4 cut(s) 337, 565, 595, 655
BstKTI GATC 7 cut(s) 101, 152, 234, 303, 664, 756, 839
BstMAI GTCTC 3 cut(s) 195, 217, 513
BstMBI GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 53, 343, 346, 755
BstNI CCWGG 1 cut(s) 859
BstSCI CCNGG 2 cut(s) 719, 857
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 2 cut(s) 593, 758
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 5 cut(s) 98, 149, 231, 300, 661
BstYI RGATCY 5 cut(s) 98, 149, 231, 300, 661
BstZI CGGCCG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 109, 468
Cac8I GCNNGC 1 cut(s) 632
CfoI GCGC 4 cut(s) 337, 565, 595, 655
Cfr10I RCCGGY 1 cut(s) 559
CseI GACGC 2 cut(s) 747, 806
Csp6I GTAC 2 cut(s) 808, 844
CviAII CATG 1 cut(s) 685
CviJI RGCY 4 cut(s) 187, 634, 707, 793
CviKI_1 RGCY 4 cut(s) 187, 634, 707, 793
CviQI GTAC 2 cut(s) 808, 844
DdeI CTNAG 2 cut(s) 708, 840
DinI GGCGCC 1 cut(s) 654
DpnI GATC 7 cut(s) 100, 151, 233, 302, 663, 755, 838
DpnII GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
DrdI GACNNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 185
EagI CGGCCG 1 cut(s) 185
Eam1104I CTCTTC 2 cut(s) 169, 454
EarI CTCTTC 2 cut(s) 169, 454
EciI GGCGGA 2 cut(s) 148, 447
EclXI CGGCCG 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 654
EheI GGCGCC 1 cut(s) 654
Esp3I CGTCTC 2 cut(s) 195, 513
FaeI CATG 1 cut(s) 688
FaiI YATR 5 cut(s) 27, 29, 515, 686, 830
FatI CATG 1 cut(s) 684
FauI CCCGC 5 cut(s) 499, 598, 652, 728, 742
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 9 cut(s) 338, 341, 344, 347, 441, 485, 495, 596, 599
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 9 cut(s) 338, 341, 344, 347, 441, 485, 495, 596, 599
FspBI CTAG 3 cut(s) 96, 422, 666
GlaI GCGC 4 cut(s) 336, 564, 594, 654
GluI GCNGC 9 cut(s) 338, 341, 344, 347, 441, 485, 495, 596, 599
GsuI CTGGAG 1 cut(s) 783
HaeII RGCGCY 2 cut(s) 338, 656
HaeIII GGCC 1 cut(s) 187
HapII CCGG 3 cut(s) 560, 650, 720
HgaI GACGC 2 cut(s) 747, 806
HhaI GCGC 4 cut(s) 337, 565, 595, 655
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 1 cut(s) 688
Hin6I GCGC 4 cut(s) 335, 563, 593, 653
HinP1I GCGC 4 cut(s) 335, 563, 593, 653
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 6 cut(s) 155, 179, 475, 500, 607, 777
HpaII CCGG 3 cut(s) 560, 650, 720
HphI GGTGA 1 cut(s) 561
Hpy166II GTNNAC 2 cut(s) 606, 808
Hpy188I TCNGA 7 cut(s) 154, 231, 300, 661, 776, 797, 875
Hpy188III TCNNGA 5 cut(s) 96, 147, 206, 762, 821
Hpy8I GTNNAC 2 cut(s) 606, 808
Hpy99I CGWCG 8 cut(s) 484, 526, 619, 622, 661, 698, 776, 837
HpyAV CCTTC 5 cut(s) 179, 375, 588, 645, 739
HpyCH4III ACNGT 1 cut(s) 848
HpyCH4IV ACGT 2 cut(s) 141, 832
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 343, 346, 755
HpyF3I CTNAG 2 cut(s) 708, 840
HpySE526I ACGT 2 cut(s) 141, 832
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 1 cut(s) 688
HspAI GCGC 4 cut(s) 335, 563, 593, 653
KasI GGCGCC 1 cut(s) 652
Kzo9I GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
LmnI GCTCC 3 cut(s) 117, 652, 704
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 452, 844
MaeI CTAG 3 cut(s) 96, 422, 666
MaeII ACGT 2 cut(s) 141, 832
MaeIII GTNAC 1 cut(s) 848
MalI GATC 7 cut(s) 100, 151, 233, 302, 663, 755, 838
MbiI CCGCTC 2 cut(s) 647, 735
MboI GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
MboII GAAGA 3 cut(s) 156, 441, 573
MflI RGATCY 5 cut(s) 98, 149, 231, 300, 661
MhlI GDGCHC 2 cut(s) 468, 795
MluCI AATT 4 cut(s) 225, 272, 428, 573
Mly113I GGCGCC 1 cut(s) 653
MlyI GAGTC 3 cut(s) 469, 601, 786
MmeI TCCRAC 3 cut(s) 576, 639, 754
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 560, 650, 720
MspR9I CCNGG 2 cut(s) 721, 859
MvaI CCWGG 1 cut(s) 859
MvnI CGCG 2 cut(s) 593, 758
MwoI GCNNNNNNNGC 4 cut(s) 53, 343, 346, 755
NarI GGCGCC 1 cut(s) 653
NciI CCSGG 1 cut(s) 721
NdeII GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
NlaIII CATG 1 cut(s) 688
NlaIV GGNNCC 3 cut(s) 6, 654, 663
NmeAIII GCCGAG 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PfeI GAWTC 3 cut(s) 155, 179, 500
PflFI GACNNNGTC 1 cut(s) 478
PkrI GCNGC 9 cut(s) 339, 342, 345, 348, 442, 486, 496, 597, 600
PleI GAGTC 3 cut(s) 469, 601, 785
PluTI GGCGCC 1 cut(s) 656
PpsI GAGTC 3 cut(s) 469, 601, 785
Ppu21I YACGTR 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 6, 654, 663
PsuI RGATCY 5 cut(s) 98, 149, 231, 300, 661
PsyI GACNNNGTC 1 cut(s) 478
RsaI GTAC 2 cut(s) 809, 845
RsaNI GTAC 2 cut(s) 808, 844
RseI CAYNNNNRTG 1 cut(s) 140
SalI GTCGAC 1 cut(s) 604
SatI GCNGC 9 cut(s) 338, 341, 344, 347, 441, 485, 495, 596, 599
Sau3AI GATC 7 cut(s) 98, 149, 231, 300, 661, 753, 836
SchI GAGTC 3 cut(s) 469, 601, 786
ScrFI CCNGG 2 cut(s) 721, 859
SduI GDGCHC 2 cut(s) 468, 795
SetI ASST 7 cut(s) 140, 144, 213, 330, 383, 709, 835
SfaNI GCATC 2 cut(s) 452, 844
SfoI GGCGCC 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 4 cut(s) 225, 272, 428, 573
SspDI GGCGCC 1 cut(s) 652
SspMI CTAG 3 cut(s) 96, 422, 666
StyD4I CCNGG 2 cut(s) 719, 857
TaaI ACNGT 1 cut(s) 848
TaiI ACGT 2 cut(s) 144, 835
TaqI TCGA 4 cut(s) 330, 387, 605, 835
TasI AATT 4 cut(s) 225, 272, 428, 573
TatI WGTACW 1 cut(s) 807
TauI GCSGC 8 cut(s) 340, 343, 346, 349, 443, 487, 598, 601
TfiI GAWTC 3 cut(s) 155, 179, 500
TscAI CASTG 2 cut(s) 109, 468
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 373, 701
TspGWI ACGGA 4 cut(s) 468, 510, 537, 717
TspRI CASTG 2 cut(s) 109, 468
Tth111I GACNNNGTC 1 cut(s) 478
XapI RAATTY 1 cut(s) 225
XbaI TCTAGA 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 605
XspI CTAG 3 cut(s) 96, 422, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.