Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004419

Physical Location & Seq

Genomic Coordinates Forward (+)

10496350 .. 10499584

Gene Structure 3235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCCTCCACCTCAATAACACCCTCGTCTCCGCAAATCACCCCACCGTTCCCCAAATTAACCCTTTTCACACCTGCTTGCGACCTCCGCTCCCGGGCCCACGGTTGCTGCGTGCGCTGCGTGGAGGGCGGGGCAGGTGGAGAGTGCCGAGACACAGTAAAACGCCGAGATCGCGCTCTTGAAAATGGCGGATCGTCATCCCAAACCCTCATCACACTGGTAATACAGCTCTCGTCGTCTTCCTCGTCGTTCTTCCAAATCACCGGCTTCCAGATGGCTGAGGCGGCGAAGGTTCTGTACATAGTGGTGGTGGACGATGAGGGCAAGAGAGAGAAAGGGAAGGAGTCCTTTCGGTATACTCGTCCTGTTTTGCAAAGCTCTCTGCAACTCATGGGCTGCAAGCCCCGTCACGCCTTCAAGATTAGCCAACGGGTTTTTGAATCGATAAGAAATGAGAGTTCATCAAATGTCTTGCTTCCGGAAGGAACAGAAAATGTTCCCCCCGGTAAATCTGAGGCCTGCAACCATTTGGGTTCAGGGAAAGATGACAGAAGCAAGAGTGTACCATTTGAATTGTACAAAGCACGCACGACTGTTGTGGTTAGGAGAAAAACCTTCTTAAACGTTGTTTGTGATGCTCAGGCTGAGTACAAGTATGTTGGTCCTAACCAGCAGGCAGACTTAGCTTTGGCATGCAGAATCAGGGAAAGGAAGGAATCCGTGATTGTACTGTTGTGTGGCACTAGTGGCTGTGGAAAATCTACTTTGTCCTCATTGCTGGGTAGCAGATTGGGAATTACAACTGTGATATCTACTGACTCAATTCGGCATATGATGAGGAGCTTTGTAGATGAAAAAGAAAACCCTCTGCTATGGGCTTCAACCTATCATGCAGGGGAGTGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33

Protein Analysis

303

Amino Acids

33.07

Weight (kDa)

9.08

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	243 - 286	5.2e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45090 AT3G45090 AT5G60760 AT5G60760
fragaria_vesca	FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410
malus_domestica	MD03G1124200.v1.1 MD11G1141200.v1.1
prunus_persica	Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1
pyrus_communis	pycom11g11720 pycom11g11730 pycom11g11740
rosa_chinensis	RchiOBHm_Chr5g0058141
rosa_laevigata	RLG00000035194
rosa_multiflora	Rmu_sc0000367.1_g000014
rosa_roxburghii	Rroxscaffold_1G00022450
rosa_rugosa	Rorug05G0311300 Rorug05G0311400 Rorug05G0311500
rosa_samantha	Rh5AG379700 Rh5BG390800 Rh5CG414800 Rh5DG405500 Rh7BG226800 Rh7BG226900
rosa_wichuraiana	Rw5G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	82, 125
Acc36I	ACCTGC	2 cut(s)	82, 125
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	5 cut(s)	32, 88, 129, 189, 284
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	1 cut(s)	199
AfaI	GTAC	5 cut(s)	299, 564, 578, 650, 729
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	182, 418, 440, 572, 882
AhlI	ACTAGT	1 cut(s)	743
AluBI	AGCT	4 cut(s)	229, 378, 686, 843
AluI	AGCT	4 cut(s)	229, 378, 686, 843
Alw26I	GTCTC	2 cut(s)	33, 144
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	2 cut(s)	96, 516
ApaI	GGGCCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	108, 117, 396
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	117, 176
AspS9I	GGNCC	3 cut(s)	96, 97, 662
AsuC2I	CCSGG	3 cut(s)	94, 95, 504
AsuHPI	GGTGA	2 cut(s)	31, 253
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	100
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	95, 104, 383
BccI	CCATC	1 cut(s)	268
BcnI	CCSGG	3 cut(s)	94, 95, 504
BcoDI	GTCTC	2 cut(s)	33, 144
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	1 cut(s)	744
BfuAI	ACCTGC	2 cut(s)	82, 125
BisI	GCNGC	4 cut(s)	109, 118, 285, 397
BlsI	GCNGC	4 cut(s)	110, 119, 286, 398
Bme1390I	CCNGG	3 cut(s)	94, 95, 504
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	3 cut(s)	96, 97, 662
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	3 cut(s)	94, 95, 504
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	2 cut(s)	279, 639
BpuMI	CCSGG	3 cut(s)	94, 95, 504
Bsa29I	ATCGAT	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	93, 100, 502
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	3 cut(s)	74, 104, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	93, 100, 502
BseGI	GGATG	1 cut(s)	197
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	773
BseMII	CTCAG	4 cut(s)	270, 504, 636, 653
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	853
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	95, 104, 383
BseYI	CCCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	98, 518
BshVI	ATCGAT	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	94, 264, 479, 504
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	33, 144
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	98, 518
BsoBI	CYCGRG	1 cut(s)	93
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	478
Bsp1407I	TGTACA	2 cut(s)	297, 576
Bsp143I	GATC	2 cut(s)	169, 191
BspACI	CCGC	5 cut(s)	32, 88, 129, 189, 284
BspANI	GGCC	2 cut(s)	98, 518
BspCNI	CTCAG	4 cut(s)	271, 505, 637, 652
BspDI	ATCGAT	1 cut(s)	443
BspEI	TCCGGA	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	98
BspMI	ACCTGC	2 cut(s)	82, 125
BspPI	GGATC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	773
BsrFI	RCCGGY	1 cut(s)	263
BsrGI	TGTACA	2 cut(s)	297, 576
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	93, 100, 502
BssMI	GATC	2 cut(s)	169, 191
BssNAI	GTATAC	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	357
Bst4CI	ACNGT	6 cut(s)	48, 104, 157, 595, 732, 805
BstAUI	TGTACA	2 cut(s)	297, 576
BstC8I	GCNNGC	7 cut(s)	79, 113, 401, 520, 586, 675, 694
BstDEI	CTNAG	5 cut(s)	279, 513, 639, 645, 682
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	117, 176
BstKTI	GATC	2 cut(s)	172, 194
BstMAI	GTCTC	2 cut(s)	33, 144
BstMBI	GATC	2 cut(s)	169, 191
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 114, 117, 126, 171, 284, 683, 747
BstNSI	RCATGY	1 cut(s)	696
BstSCI	CCNGG	3 cut(s)	92, 93, 502
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	95, 104, 383
BstV2I	GAAGAC	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	98, 518
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	2 cut(s)	82, 125
Cac8I	GCNNGC	7 cut(s)	79, 113, 401, 520, 586, 675, 694
CfoI	GCGC	2 cut(s)	117, 176
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	96, 97, 662
Cfr9I	CCCGGG	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	5 cut(s)	298, 563, 577, 649, 728
CviAII	CATG	3 cut(s)	391, 693, 890
CviQI	GTAC	5 cut(s)	298, 563, 577, 649, 728
DdeI	CTNAG	5 cut(s)	279, 513, 639, 645, 682
DpnI	GATC	2 cut(s)	171, 193
DpnII	GATC	2 cut(s)	169, 191
EciI	GGCGGA	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	394, 696, 893
FaiI	YATR	9 cut(s)	302, 357, 392, 657, 694, 831, 833, 874, 891
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	3 cut(s)	390, 692, 889
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	109, 118, 285, 397
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	109, 118, 285, 397
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	2 cut(s)	116, 175
GluI	GCNGC	4 cut(s)	109, 118, 285, 397
GsaI	CCCAGC	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	98, 518
HapII	CCGG	4 cut(s)	94, 264, 479, 504
HhaI	GCGC	2 cut(s)	117, 176
Hin1II	CATG	3 cut(s)	394, 696, 893
Hin6I	GCGC	2 cut(s)	115, 174
HinP1I	GCGC	2 cut(s)	115, 174
HinfI	GANTC	5 cut(s)	344, 440, 699, 716, 818
HpaII	CCGG	4 cut(s)	94, 264, 479, 504
HphI	GGTGA	2 cut(s)	31, 253
Hpy166II	GTNNAC	3 cut(s)	313, 357, 563
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	4 cut(s)	179, 271, 418, 479
Hpy8I	GTNNAC	3 cut(s)	313, 357, 563
Hpy99I	CGWCG	2 cut(s)	238, 250
HpyAV	CCTTC	6 cut(s)	283, 334, 424, 476, 625, 706
HpyCH4III	ACNGT	6 cut(s)	48, 104, 157, 595, 732, 805
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	373, 385, 399, 522, 696, 893
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 114, 117, 126, 171, 284, 683, 747
HpyF3I	CTNAG	5 cut(s)	279, 513, 639, 645, 682
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	394, 696, 893
HspAI	GCGC	2 cut(s)	115, 174
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	169, 191
LmnI	GCTCC	2 cut(s)	95, 840
Lsp1109I	GCAGC	3 cut(s)	95, 104, 383
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	171, 193
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	2 cut(s)	169, 191
MboII	GAAGA	2 cut(s)	231, 244
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	56, 572, 795, 822
MlyI	GAGTC	2 cut(s)	353, 812
MroI	TCCGGA	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	59, 620
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	4 cut(s)	94, 264, 479, 504
MspR9I	CCNGG	3 cut(s)	94, 95, 504
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	8 cut(s)	87, 114, 117, 126, 171, 284, 683, 747
NciI	CCSGG	3 cut(s)	94, 95, 504
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	2 cut(s)	169, 191
NlaIII	CATG	3 cut(s)	394, 696, 893
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	2 cut(s)	173, 191
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	696
PaeI	GCATGC	1 cut(s)	696
PaqCI	CACCTGC	2 cut(s)	82, 125
PceI	AGGCCT	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 242, 358
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	440, 699, 716
PkrI	GCNGC	4 cut(s)	110, 119, 286, 398
PleI	GAGTC	2 cut(s)	352, 812
PpsI	GAGTC	2 cut(s)	352, 812
Psp1406I	AACGTT	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	98
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	96, 97, 662
RsaI	GTAC	5 cut(s)	299, 564, 578, 650, 729
RsaNI	GTAC	5 cut(s)	298, 563, 577, 649, 728
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	59, 620
SatI	GCNGC	4 cut(s)	109, 118, 285, 397
Sau3AI	GATC	2 cut(s)	169, 191
Sau96I	GGNCC	3 cut(s)	96, 97, 662
SchI	GAGTC	2 cut(s)	353, 812
ScrFI	CCNGG	3 cut(s)	94, 95, 504
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	1 cut(s)	662
SmaI	CCCGGG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	743
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	4 cut(s)	56, 572, 795, 822
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	5 cut(s)	32, 88, 129, 189, 284
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	92, 93, 502
TaaI	ACNGT	6 cut(s)	48, 104, 157, 595, 732, 805
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	56, 572, 795, 822
TatI	WGTACW	4 cut(s)	297, 576, 648, 727
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	3 cut(s)	440, 699, 716
Tru1I	TTAA	2 cut(s)	59, 620
Tru9I	TTAA	2 cut(s)	59, 620
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	3 cut(s)	108, 117, 396
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	450, 867
TspGWI	ACGGA	1 cut(s)	709
TspMI	CCCGGG	1 cut(s)	93
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	662
XceI	RCATGY	1 cut(s)	696
XmaI	CCCGGG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.