Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004419

Physical Location & Seq

Genomic Coordinates Reverse (-)

19566342 .. 19566671

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCAGGATGTTCAGGGGAATGGATACTGGTCAGATGATGATGCTACGGAGCGCAAGCTTAAGATATTCCCTGTTGCTGAGCACCCATCAGCCAATAAGGATGTGGATAAGTATCGCCAGAACCTGGATCTTTTCCTTAGAACTAGAAACGAGTCATTTTCTGAACCACTATGTTCATATACTTCTCTCTTTATGGAGAAGAATGAGATGACAATGCCGTGCTCTGGCAATATGAAAATTAGAAAACGCCGGTCCCTTAGCATTCCAGCATTGGGAAGGCATGGGTCAAAAACAAGGGGTCCCATACTTTCTGGTGCCCCTCAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

9.12

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45090 AT3G45090 AT5G60760 AT5G60760
fragaria_vesca	FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410
malus_domestica	MD03G1124200.v1.1 MD11G1141200.v1.1
prunus_persica	Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1
pyrus_communis	pycom11g11720 pycom11g11730 pycom11g11740
rosa_chinensis	RchiOBHm_Chr5g0058141
rosa_laevigata	RLG00000035194
rosa_multiflora	Rmu_sc0000367.1_g000014
rosa_roxburghii	Rroxscaffold_1G00022450
rosa_rugosa	Rorug05G0311300 Rorug05G0311400 Rorug05G0311500
rosa_samantha	Rh5AG379700 Rh5BG390800 Rh5CG414800 Rh5DG405500 Rh7BG226800 Rh7BG226900
rosa_wichuraiana	Rw5G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	124
AclWI	GGATC	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	124, 224, 272
AflII	CTTAAG	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	2 cut(s)	84, 224
AlwI	GGATC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	252, 299
AvaII	GGWCC	2 cut(s)	252, 299
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	84, 224
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	17
BlpI	GCTNAGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	2 cut(s)	252, 299
BmgT120I	GGNCC	2 cut(s)	252, 299
BmiI	GGNNCC	4 cut(s)	254, 300, 301, 316
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 224, 272
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	13, 106
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	124, 224, 272
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	2 cut(s)	84, 224
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	238, 285
BslI	CCNNNNNNNGG	3 cut(s)	124, 224, 272
BsmFI	GGGAC	2 cut(s)	238, 285
BsmI	GAATGC	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	84, 224, 319
Bsp143I	GATC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	254, 300, 301, 316
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	78, 137, 257, 321
BstF5I	GGATG	2 cut(s)	13, 106
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	13, 106
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	252, 299
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	2 cut(s)	58, 92
CviKI_1	RGCY	2 cut(s)	58, 92
DdeI	CTNAG	4 cut(s)	78, 137, 257, 321
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	252, 299
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	284
FaiI	YATR	7 cut(s)	172, 178, 180, 194, 233, 282, 305
FaqI	GGGAC	2 cut(s)	238, 285
FatI	CATG	1 cut(s)	280
FokI	GGATG	2 cut(s)	20, 113
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	34, 163
HpyAV	CCTTC	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	4 cut(s)	78, 137, 257, 321
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	9 cut(s)	13, 84, 110, 131, 137, 210, 263, 279, 297
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	144
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	84, 224, 319
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	125
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	4 cut(s)	254, 300, 301, 316
PctI	GAATGC	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	124
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	4 cut(s)	254, 300, 301, 316
PspPI	GGNCC	2 cut(s)	252, 299
PspPPI	RGGWCCY	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	252, 299
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	3 cut(s)	84, 224, 319
SetI	ASST	2 cut(s)	60, 126
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	252, 299
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	123
TasI	AATT	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	165, 248
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	252, 299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.