Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004419

Physical Location & Seq

Genomic Coordinates Reverse (-)

36658865 .. 36659518

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAACCACAAACCAAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAACCGGGAGTAGTGCTAACATGCTTTGCAGGCGGAGCAGTACCAGGTGGGATCCCACTACAGATCAAATAATAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTGCAGAGCAAATTCAGAGTATCTGTCTCCAGCTGAAACGGTACGGAAAGATCGAGAGCAAGAACGTCTATTATTGGTTTGGGAACCACAGGGCCCGGGAGAAGCAGAAGAAAAAGATCACTTCGGATGTTTATGTGCCCATGCAGAGATCAGGGCTTGTTGGTAATGGTAATGGTACCAATTGGGAACCTGAGGATCAATATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACAGGGAGATTGAAACCTTTCCTCTGTTCCCCATGCACGGTGAGGACATGAAGACTACTTCCGAGGGAAGTGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACAGCTCGACCCTATTTTCCCGCGAAGGTGTTTTCTCGGCTAGAGAAGAGACAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33

Protein Analysis

217

Amino Acids

24.01

Weight (kDa)

7.71

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	5.7e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45090 AT3G45090 AT5G60760 AT5G60760
fragaria_vesca	FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410
malus_domestica	MD03G1124200.v1.1 MD11G1141200.v1.1
prunus_persica	Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1
pyrus_communis	pycom11g11720 pycom11g11730 pycom11g11740
rosa_chinensis	RchiOBHm_Chr5g0058141
rosa_laevigata	RLG00000035194
rosa_multiflora	Rmu_sc0000367.1_g000014
rosa_roxburghii	Rroxscaffold_1G00022450
rosa_rugosa	Rorug05G0311300 Rorug05G0311400 Rorug05G0311500
rosa_samantha	Rh5AG379700 Rh5BG390800 Rh5CG414800 Rh5DG405500 Rh7BG226800 Rh7BG226900
rosa_wichuraiana	Rw5G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	615
AciI	CCGC	3 cut(s)	82, 543, 613
AclWI	GGATC	5 cut(s)	95, 108, 369, 388, 469
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	3 cut(s)	91, 209, 343
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	136, 199, 577, 597, 649
AluI	AGCT	5 cut(s)	136, 199, 577, 597, 649
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	2 cut(s)	197, 635
AlwI	GGATC	5 cut(s)	95, 108, 369, 388, 469
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	258
ApaI	GGGCCC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	486
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	159, 258, 259
AsuC2I	CCSGG	3 cut(s)	55, 262, 263
AsuHPI	GGTGA	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	262, 306
BamHI	GGATCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	262, 579
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	579
BccI	CCATC	2 cut(s)	26, 433
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	3 cut(s)	55, 262, 263
BcoDI	GTCTC	2 cut(s)	197, 635
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	3 cut(s)	108, 168, 592
BisI	GCNGC	1 cut(s)	544
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	4 cut(s)	55, 94, 262, 263
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	159, 258, 259
BmiI	GGNNCC	7 cut(s)	6, 102, 161, 251, 260, 343, 354
BmrFI	CCNGG	4 cut(s)	55, 94, 262, 263
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	113, 593
BpuMI	CCSGG	3 cut(s)	55, 262, 263
BsaJI	CCNNGG	3 cut(s)	27, 261, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse21I	CCTNAGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	27, 261, 531
BseGI	GGATG	2 cut(s)	37, 298
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	348, 592
BseSI	GKGCMC	2 cut(s)	262, 306
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 262
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	197, 635
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	261
Bsp120I	GGGCCC	1 cut(s)	258
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 579
Bsp143I	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	3 cut(s)	82, 543, 613
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	349, 591
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	7 cut(s)	6, 102, 161, 251, 260, 343, 354
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	5 cut(s)	95, 108, 369, 388, 469
BspT107I	GGYRCC	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	27, 261, 531
BssMI	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	207, 509, 554
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	357, 578
BstF5I	GGATG	2 cut(s)	37, 298
BstFNI	CGCG	1 cut(s)	615
BstKTI	GATC	8 cut(s)	103, 115, 219, 285, 317, 364, 383, 464
BstMAI	GTCTC	2 cut(s)	197, 635
BstMBI	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	4 cut(s)	53, 92, 260, 261
BstSFI	CTRYAG	3 cut(s)	108, 168, 592
BstSLI	GKGCMC	2 cut(s)	262, 306
BstUI	CGCG	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	3 cut(s)	100, 380, 461
BstYI	RGATCY	3 cut(s)	100, 380, 461
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	37, 298
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	159, 258, 259
Cfr9I	CCCGGG	1 cut(s)	261
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 208, 342
CviAII	CATG	4 cut(s)	70, 307, 502, 517
CviQI	GTAC	3 cut(s)	90, 208, 342
DdeI	CTNAG	2 cut(s)	357, 578
DpnI	GATC	8 cut(s)	102, 114, 218, 284, 316, 363, 382, 463
DpnII	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	262, 579
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	2 cut(s)	159, 258
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	262, 579
FaeI	CATG	4 cut(s)	73, 310, 505, 520
FaiI	YATR	9 cut(s)	71, 300, 308, 369, 450, 459, 467, 503, 518
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	69, 306, 501, 516
FauI	CCCGC	1 cut(s)	620
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	2 cut(s)	262, 579
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	1 cut(s)	544
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	2 cut(s)	54, 262
Hin1II	CATG	4 cut(s)	73, 310, 505, 520
HpaII	CCGG	2 cut(s)	54, 262
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	183, 292, 380, 532
Hpy188III	TCNNGA	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	3 cut(s)	207, 509, 554
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	5 cut(s)	78, 170, 310, 389, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
HpyF3I	CTNAG	2 cut(s)	357, 578
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	73, 310, 505, 520
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
LmnI	GCTCC	2 cut(s)	84, 133
LweI	GCATC	1 cut(s)	398
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	231
MalI	GATC	8 cut(s)	102, 114, 218, 284, 316, 363, 382, 463
MboI	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
MboII	GAAGA	5 cut(s)	286, 375, 396, 532, 650
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	3 cut(s)	100, 380, 461
MhlI	GDGCHC	3 cut(s)	262, 306, 579
MluCI	AATT	2 cut(s)	177, 346
MnlI	CCTC	8 cut(s)	22, 29, 137, 352, 501, 505, 526, 593
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	2 cut(s)	372, 429
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 262
MspR9I	CCNGG	4 cut(s)	55, 94, 262, 263
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
NciI	CCSGG	3 cut(s)	55, 262, 263
NdeII	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
NlaIII	CATG	4 cut(s)	73, 310, 505, 520
NlaIV	GGNNCC	7 cut(s)	6, 102, 161, 251, 260, 343, 354
NmeAIII	GCCGAG	1 cut(s)	608
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	7 cut(s)	6, 102, 161, 251, 260, 343, 354
PspOMI	GGGCCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	159, 258, 259
PspPPI	RGGWCCY	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	3 cut(s)	100, 380, 461
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	91, 209, 343
RsaNI	GTAC	3 cut(s)	90, 208, 342
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	372, 429
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	8 cut(s)	100, 112, 216, 282, 314, 361, 380, 461
Sau96I	GGNCC	3 cut(s)	159, 258, 259
ScrFI	CCNGG	4 cut(s)	55, 94, 262, 263
SduI	GDGCHC	3 cut(s)	262, 306, 579
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	3 cut(s)	108, 168, 592
SinI	GGWCC	1 cut(s)	159
SmaI	CCCGGG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	128, 572
SmoI	CTYRAG	2 cut(s)	128, 572
Sse9I	AATT	2 cut(s)	177, 346
SsiI	CCGC	3 cut(s)	82, 543, 613
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	4 cut(s)	53, 92, 260, 261
TaaI	ACNGT	3 cut(s)	207, 509, 554
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	219, 599
TasI	AATT	2 cut(s)	177, 346
TauI	GCSGC	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TspDTI	ATGAA	2 cut(s)	482, 533
TspGWI	ACGGA	1 cut(s)	225
TspMI	CCCGGG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.