Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004419

Physical Location & Seq

Genomic Coordinates Reverse (-)

36635456 .. 36637560

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAGCTCTGTGAATCAGTGGCAGCTAGTCTTGAGGGAAAAAAGTTGGGTTCATTTACAAGAATTTCTTCTACAGTTCAGGGAGCAATGGAAGAAGCTCTTGTTTGTATTTTAACTCCTAGGCGCTCTATTGATATACTGAGGGATGTGCATGCTGACAAGGAGCAGGGCAAGCCTTATGTTGTTGTTTTTGTTGGTGTCAATGGAGTCGGGAAATCTACTAATTTGTCCAAGGTTGCCTATTGGCTCCAGCAACATCAGGTCAGTGTTATGATGGCAGCATGTGATACATTCCGATCAGGGGCTGTTGAGCAGTTGCGTACTCATGCACGTAGACTCCAGATCCCTATTTCTGAGAAGGGATATGAGAAAGATCCTGCTGTTGTTGCAAAGGAAGCAATCCAGGAGGCCAAACTCAATGGTTCTGATGTGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGCCTTTTTGAAATCGTACAGGAATTTCGGACACATTGAATCTGGTCTTCACAAGAACTTGTTCCCCTTCCTTATTTTCCTCCTCGGTGGTTCTCAAGCTGCTTCTCTGAATTTGGTAGCTGATTATGATTCTTTGAAATGTCTAGCTGATGGAAGCCTTCTCAGTGAGGCAGTGATGGATTCTGAGAATGCTGTAGCTGCCGTAAATATACAATTAGCATTATCAGACCCATTTAGATTGCTATGGGATTATAACAACTATCTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33

Protein Analysis

255

Amino Acids

27.89

Weight (kDa)

5.78

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	70 - 157	3.3e-26	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45090 AT3G45090 AT5G60760 AT5G60760
fragaria_vesca	FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410
malus_domestica	MD03G1124200.v1.1 MD11G1141200.v1.1
prunus_persica	Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1
pyrus_communis	pycom11g11720 pycom11g11730 pycom11g11740
rosa_chinensis	RchiOBHm_Chr5g0058141
rosa_laevigata	RLG00000035194
rosa_multiflora	Rmu_sc0000367.1_g000014
rosa_roxburghii	Rroxscaffold_1G00022450
rosa_rugosa	Rorug05G0311300 Rorug05G0311400 Rorug05G0311500
rosa_samantha	Rh5AG379700 Rh5BG390800 Rh5CG414800 Rh5DG405500 Rh7BG226800 Rh7BG226900
rosa_wichuraiana	Rw5G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	364
AclWI	GGATC	3 cut(s)	367, 398, 479
AcsI	RAATTY	3 cut(s)	93, 520, 607
AfaI	GTAC	2 cut(s)	352, 515
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	508, 536, 634
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	9 cut(s)	29, 37, 56, 128, 482, 596, 617, 644, 695
AluI	AGCT	9 cut(s)	29, 37, 56, 128, 482, 596, 617, 644, 695
AlwI	GGATC	3 cut(s)	367, 398, 479
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	438, 498
ApeKI	GCWGC	5 cut(s)	53, 308, 479, 596, 695
ApoI	RAATTY	3 cut(s)	93, 520, 607
Asp700I	GAANNNNTTC	2 cut(s)	97, 557
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	156
AvrII	CCTAGG	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	536
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	65, 320, 491, 583, 682
BccI	CCATC	3 cut(s)	298, 641, 667
BceAI	ACGGC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	434
BfaI	CTAG	3 cut(s)	57, 150, 641
BfmI	CTRYAG	3 cut(s)	102, 477, 690
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	5 cut(s)	54, 309, 480, 597, 696
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	5 cut(s)	55, 310, 481, 598, 697
Bme1390I	CCNGG	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	2 cut(s)	263, 353
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	83, 576
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	149, 261, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	3 cut(s)	149, 261, 580
BseGI	GGATG	2 cut(s)	181, 475
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	6 cut(s)	9, 21, 161, 375, 672, 673
BseRI	GAGGAG	2 cut(s)	35, 569
BseXI	GCAGC	5 cut(s)	65, 320, 491, 583, 682
BshFI	GGCC	2 cut(s)	440, 500
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	2 cut(s)	440, 500
Bsp143I	GATC	4 cut(s)	326, 372, 403, 484
BspANI	GGCC	2 cut(s)	440, 500
BspCNI	CTCAG	6 cut(s)	10, 22, 162, 376, 672, 673
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	3 cut(s)	367, 398, 479
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	149, 261, 580
BssMI	GATC	4 cut(s)	326, 372, 403, 484
BssT1I	CCWWGG	2 cut(s)	149, 261
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	183, 203, 498
BstDEI	CTNAG	6 cut(s)	18, 30, 170, 384, 659, 681
BstF5I	GGATG	2 cut(s)	181, 475
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	329, 375, 406, 487
BstMBI	GATC	4 cut(s)	326, 372, 403, 484
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 416, 425, 479, 695
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	185, 315
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	3 cut(s)	102, 477, 690
BstV1I	GCAGC	5 cut(s)	65, 320, 491, 583, 682
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	372, 403
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	2 cut(s)	372, 403
BsuRI	GGCC	2 cut(s)	440, 500
BtsCI	GGATG	2 cut(s)	181, 475
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	4 cut(s)	54, 301, 667, 675
Cac8I	GCNNGC	3 cut(s)	183, 203, 498
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	351, 514
CviAII	CATG	3 cut(s)	182, 312, 356
CviQI	GTAC	2 cut(s)	351, 514
DdeI	CTNAG	6 cut(s)	18, 30, 170, 384, 659, 681
DpnI	GATC	4 cut(s)	328, 374, 405, 486
DpnII	GATC	4 cut(s)	326, 372, 403, 484
Eco130I	CCWWGG	2 cut(s)	149, 261
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	149, 261
ErhI	CCWWGG	2 cut(s)	149, 261
FaeI	CATG	3 cut(s)	185, 315, 359
FalI	AAGNNNNNCTT	4 cut(s)	82, 114, 114, 146
FatI	CATG	3 cut(s)	181, 311, 355
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	54, 309, 480, 597, 696
FokI	GGATG	2 cut(s)	188, 482
Fsp4HI	GCNGC	5 cut(s)	54, 309, 480, 597, 696
FspBI	CTAG	3 cut(s)	57, 150, 641
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	5 cut(s)	54, 309, 480, 597, 696
GsuI	CTGGAG	2 cut(s)	263, 353
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	440, 500
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	185, 315, 359
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	6 cut(s)	44, 237, 366, 536, 626, 677
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	7 cut(s)	326, 385, 457, 527, 606, 682, 724
Hpy188III	TCNNGA	3 cut(s)	62, 241, 370
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	382, 574, 665
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	181, 359, 419, 473, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 416, 425, 479, 695
HpyF3I	CTNAG	6 cut(s)	18, 30, 170, 384, 659, 681
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	185, 315, 359
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	326, 372, 403, 484
LmnI	GCTCC	3 cut(s)	113, 193, 282
Lsp1109I	GCAGC	5 cut(s)	65, 320, 491, 583, 682
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	3 cut(s)	57, 150, 641
MaeII	ACGT	1 cut(s)	361
MalI	GATC	4 cut(s)	328, 374, 405, 486
MboI	GATC	4 cut(s)	326, 372, 403, 484
MboII	GAAGA	3 cut(s)	90, 134, 536
MflI	RGATCY	2 cut(s)	372, 403
MluCI	AATT	6 cut(s)	93, 253, 491, 520, 607, 710
MlyI	GAGTC	2 cut(s)	246, 360
MnlI	CCTC	7 cut(s)	13, 58, 165, 430, 587, 590, 658
MroXI	GAANNNNTTC	2 cut(s)	97, 557
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	5 cut(s)	202, 416, 425, 479, 695
NdeII	GATC	4 cut(s)	326, 372, 403, 484
NlaIII	CATG	3 cut(s)	185, 315, 359
NlaIV	GGNNCC	1 cut(s)	278
NspI	RCATGY	2 cut(s)	185, 315
PaeI	GCATGC	1 cut(s)	185
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	97, 557
PfeI	GAWTC	4 cut(s)	44, 536, 626, 677
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	55, 310, 481, 598, 697
PleI	GAGTC	2 cut(s)	245, 360
PpsI	GAGTC	2 cut(s)	245, 360
Ppu21I	YACGTR	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	372, 403
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	352, 515
RsaNI	GTAC	2 cut(s)	351, 514
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	5 cut(s)	54, 309, 480, 597, 696
Sau3AI	GATC	4 cut(s)	326, 372, 403, 484
SchI	GAGTC	2 cut(s)	246, 360
ScrFI	CCNGG	1 cut(s)	434
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	3 cut(s)	102, 477, 690
SmlI	CTYRAG	2 cut(s)	62, 591
SmoI	CTYRAG	2 cut(s)	62, 591
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	6 cut(s)	93, 253, 491, 520, 607, 710
SspMI	CTAG	3 cut(s)	57, 150, 641
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	2 cut(s)	149, 261
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	364
TasI	AATT	6 cut(s)	93, 253, 491, 520, 607, 710
TfiI	GAWTC	4 cut(s)	44, 536, 626, 677
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	4 cut(s)	54, 301, 667, 675
TseI	GCWGC	5 cut(s)	53, 308, 479, 596, 695
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	4 cut(s)	54, 301, 667, 675
XapI	RAATTY	3 cut(s)	93, 520, 607
XceI	RCATGY	2 cut(s)	185, 315
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	2 cut(s)	97, 557
XspI	CTAG	3 cut(s)	57, 150, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.