Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004419

Physical Location & Seq

Genomic Coordinates Forward (+)

10499671 .. 10500561

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCCTGATGGCTCTTCCTCTGGGAAATCTGATACCCGATTGTCAGACATCGGTTCGAGTACTGCTGAATTGATCAGTGCAAAGCAGTTGGCTGTTGAAGGATTTAAGGCTCAAAGTGAGATGGTGATTGACAGTCTTGATCGACTTATCACTGCGTGGGAGGAACGAAGAGAATCAGTTATTGTGGAAGGTGTTCACTTGAGCCTTAATTTTGTGATGGGGCTTATGAAGAAACACCCTTCGATCATTCCATTCATGATATACATCACAAATGAGGACAAACACATGGAACGGTTTGCTGTCCGTGCAAAGTATATGACACTGGACCCAACAAAGAACAAGTATGTGAAGTATATTCGTAACATCAGGACAATCCAAGAATATCTCTGTAAGCGAGCTGACAAGCATCTTGTCCCCAAAATTAACAATACAAATGTTGACAAGAGTGTGGCAGCTATCCATGCAACGGTCTTTAGCTGCCTCCGTAGGCGTGAAGCAGGGGAGCACCTTTATGATCCCACAAGAAACACAGTTACTGTAGTGGATGAGGAGTACAGAAACCAGTGTGCAGCCAATTCTTTGAGTTCTAAGGGGATGTTTCAGTTGATCCAGAGAAAAGGGTCGTCTAGGCATCTGATGGCTCTTGTAAATACTGATGGATCTGTGGCAAAGGCCTGGCCTGTTGATTCAGTTGATAGTAATGGGAAGCCTATATATTGCCATGGGACTGAGATGGAGATTGGAACCGCAGAGCAAGTGAATCTTCAGTTTGGTGCTTTATGGGATCAGCGCTTGGCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_33

Protein Analysis

268

Amino Acids

30.07

Weight (kDa)

8.58

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45090 AT3G45090 AT5G60760 AT5G60760
fragaria_vesca	FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410 FvH4_3g31410
malus_domestica	MD03G1124200.v1.1 MD11G1141200.v1.1
prunus_persica	Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1 Prupe.6G106900_v2.0.a1
pyrus_communis	pycom11g11720 pycom11g11730 pycom11g11740
rosa_chinensis	RchiOBHm_Chr5g0058141
rosa_laevigata	RLG00000035194
rosa_multiflora	Rmu_sc0000367.1_g000014
rosa_roxburghii	Rroxscaffold_1G00022450
rosa_rugosa	Rorug05G0311300 Rorug05G0311400 Rorug05G0311500
rosa_samantha	Rh5AG379700 Rh5BG390800 Rh5CG414800 Rh5DG405500 Rh7BG226800 Rh7BG226900
rosa_wichuraiana	Rw5G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	4 cut(s)	509, 601, 667, 792
AcuI	CTGAAG	1 cut(s)	749
AdeI	CACNNNGTG	1 cut(s)	156
AfaI	GTAC	2 cut(s)	61, 554
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	674
AluBI	AGCT	3 cut(s)	398, 455, 477
AluI	AGCT	3 cut(s)	398, 455, 477
Alw21I	GWGCWC	1 cut(s)	507
AlwI	GGATC	4 cut(s)	509, 601, 667, 792
AlwNI	CAGNNNCTG	1 cut(s)	536
Aor51HI	AGCGCT	1 cut(s)	791
AoxI	GGCC	3 cut(s)	672, 677, 795
ApeKI	GCWGC	3 cut(s)	452, 477, 569
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	2 cut(s)	325, 796
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	464, 464, 581
BccI	CCATC	6 cut(s)	2, 115, 211, 631, 650, 727
BciT130I	CCWGG	1 cut(s)	676
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	793
BisI	GCNGC	3 cut(s)	453, 478, 570
BlsI	GCNGC	3 cut(s)	454, 479, 571
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	325, 796
BmiI	GGNNCC	2 cut(s)	327, 745
BmrFI	CCNGG	1 cut(s)	676
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	2 cut(s)	415, 640
BmuI	ACTGGG	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	327, 562, 799
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	2 cut(s)	550, 600
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	327, 562, 799
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	3 cut(s)	464, 464, 581
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	674, 679, 797
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	398, 739
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	398, 739
BsnI	GGCC	3 cut(s)	674, 679, 797
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
Bsp19I	CCATGG	1 cut(s)	721
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	3 cut(s)	674, 679, 797
BspCNI	CTCAG	1 cut(s)	721
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	327, 745
BspPI	GGATC	4 cut(s)	509, 601, 667, 792
BspQI	GCTCTTC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	327, 562, 799
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	5 cut(s)	134, 294, 469, 532, 538
Bst6I	CTCTTC	2 cut(s)	19, 163
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	588, 729
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	2 cut(s)	550, 600
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	7 cut(s)	75, 142, 246, 517, 609, 662, 787
BstMBI	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 461
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	674
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	464, 464, 581
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	674, 679, 797
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	2 cut(s)	550, 600
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	4 cut(s)	82, 150, 320, 569
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	325, 796
Csp6I	GTAC	2 cut(s)	60, 553
CviAII	CATG	4 cut(s)	256, 286, 461, 722
CviQI	GTAC	2 cut(s)	60, 553
DdeI	CTNAG	2 cut(s)	588, 729
DpnI	GATC	7 cut(s)	74, 141, 245, 516, 608, 661, 786
DpnII	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
DraIII	CACNNNGTG	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	19, 163
EarI	CTCTTC	2 cut(s)	19, 163
Eco130I	CCWWGG	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	325
Eco47III	AGCGCT	1 cut(s)	791
Eco57I	CTGAAG	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	4 cut(s)	259, 289, 464, 725
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	398, 739
FatI	CATG	4 cut(s)	255, 285, 460, 721
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	453, 478, 570
FokI	GGATG	2 cut(s)	557, 607
Fsp4HI	GCNGC	3 cut(s)	453, 478, 570
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	3 cut(s)	453, 478, 570
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	3 cut(s)	674, 679, 797
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	4 cut(s)	259, 289, 464, 725
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	3 cut(s)	173, 686, 760
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	196, 439
Hpy188I	TCNGA	3 cut(s)	31, 46, 636
Hpy188III	TCNNGA	4 cut(s)	137, 256, 367, 610
Hpy8I	GTNNAC	2 cut(s)	196, 439
HpyAV	CCTTC	3 cut(s)	92, 182, 249
HpyCH4III	ACNGT	5 cut(s)	134, 294, 469, 532, 538
HpyCH4V	TGCA	4 cut(s)	80, 308, 464, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 461
HpyF3I	CTNAG	2 cut(s)	588, 729
Hsp92II	CATG	4 cut(s)	259, 289, 464, 725
HspAI	GCGC	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	3 cut(s)	464, 464, 581
LweI	GCATC	2 cut(s)	415, 640
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	359, 532
MalI	GATC	7 cut(s)	74, 141, 245, 516, 608, 661, 786
MboI	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
MboII	GAAGA	4 cut(s)	6, 180, 241, 755
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	68, 208, 420, 574
MnlI	CCTC	5 cut(s)	28, 154, 268, 491, 541
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	3 cut(s)	105, 207, 423
MslI	CAYNNNNRTG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	676
MwoI	GCNNNNNNNGC	2 cut(s)	305, 461
NcoI	CCATGG	1 cut(s)	721
NdeII	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
NlaIII	CATG	4 cut(s)	259, 289, 464, 725
NlaIV	GGNNCC	2 cut(s)	327, 745
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	674
PciSI	GCTCTTC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	173, 686, 760
PkrI	GCNGC	3 cut(s)	454, 479, 571
Psp6I	CCWGG	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	327, 745
PspPI	GGNCC	2 cut(s)	325, 796
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	2 cut(s)	61, 554
RsaNI	GTAC	2 cut(s)	60, 553
RseI	CAYNNNNRTG	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	3 cut(s)	105, 207, 423
SatI	GCNGC	3 cut(s)	453, 478, 570
Sau3AI	GATC	7 cut(s)	72, 139, 243, 514, 606, 659, 784
Sau96I	GGNCC	2 cut(s)	325, 796
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	5 cut(s)	193, 400, 457, 479, 510
SfaNI	GCATC	2 cut(s)	415, 640
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	4 cut(s)	68, 208, 420, 574
SseBI	AGGCCT	1 cut(s)	674
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	5 cut(s)	134, 294, 469, 532, 538
TaqI	TCGA	3 cut(s)	56, 142, 242
TasI	AATT	4 cut(s)	68, 208, 420, 574
TatI	WGTACW	2 cut(s)	59, 552
TfiI	GAWTC	3 cut(s)	173, 686, 760
Tru1I	TTAA	3 cut(s)	105, 207, 423
Tru9I	TTAA	3 cut(s)	105, 207, 423
TscAI	CASTG	4 cut(s)	82, 157, 327, 569
TseI	GCWGC	3 cut(s)	452, 477, 569
TspDTI	ATGAA	2 cut(s)	242, 244
TspGWI	ACGGA	2 cut(s)	293, 473
TspRI	CASTG	4 cut(s)	82, 157, 327, 569
VpaK11BI	GGWCC	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.