pycom11g11870

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005691
Physical Location & Seq
Forward (+)
10663799 .. 10664218
420 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGCTTTTATTAAACGAAAAACAGCAGGACTGCCTCAGAATGACGGTTGTGAAGCGGTATGTGCTACGAATGTTCATATCATTGAAGTACATTACAGCAAACGTAGTGGACAGAAATAATGGCAGGATTGTTGTATCAGCATCTACAGTTGAACATTCAATCAAGGGCTCACTCGAATGTGGAAGGTCTTGCAACGCAAAGGCAGCGGCAGTTGTTGGAGAGGTGTTGGCTAGGAGACTCAAGGTGGAAGGTCTTGATGAGGGACAGGGACGAGGGATTCACGTCAATGTAAATAACGAAGTCGAGAAGAAGGGTTTTAGGAACCGCACCAAGATTTGGGCTATTGTCAATGCTCTTAAGAACAATGGAGTCAAACTCGTTCTTGATGATAACGATGAAAATACTTCTCGGTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

9.71

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 16 - 86 9.2e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 336
AciI CCGC 3 cut(s) 55, 206, 325
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 3 cut(s) 85, 152, 159
AjiI CACGTC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 204, 207
BlsI GCNGC 2 cut(s) 205, 208
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 360, 392
BpuEI CTTGAG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 276, 282
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 276, 282
Bsp1286I GDGCHC 1 cut(s) 170
BspACI CCGC 3 cut(s) 55, 206, 325
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 46, 148
BstAFI CTTAAG 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 35
BstMAI GTCTC 1 cut(s) 229
BstMCI CGRYCG 1 cut(s) 413
BstMWI GCNNNNNNNGC 2 cut(s) 61, 203
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 215
BtrI CACGTC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviJI RGCY 3 cut(s) 168, 230, 341
CviKI_1 RGCY 3 cut(s) 168, 230, 341
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 170
FaiI YATR 2 cut(s) 60, 77
FaqI GGGAC 2 cut(s) 276, 282
Fnu4HI GCNGC 2 cut(s) 204, 207
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 204, 207
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 204, 207
HinfI GANTC 3 cut(s) 237, 277, 369
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 254, 304, 383
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 177, 242, 304
HpyCH4III ACNGT 2 cut(s) 46, 148
HpyCH4IV ACGT 2 cut(s) 102, 282
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 203
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 102, 282
LpnPI CCDG 3 cut(s) 11, 109, 251
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 231
MaeII ACGT 2 cut(s) 102, 282
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 231, 378
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 44, 214, 253, 266
MseI TTAA 2 cut(s) 11, 357
MslI CAYNNNNRTG 2 cut(s) 175, 285
MspA1I CMGCKG 1 cut(s) 206
MspCI CTTAAG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 61, 203
NlaIV GGNNCC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 2 cut(s) 205, 208
PleI GAGTC 2 cut(s) 231, 377
PpsI GAGTC 2 cut(s) 231, 377
PspN4I GGNNCC 1 cut(s) 323
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 2 cut(s) 175, 285
SaqAI TTAA 2 cut(s) 11, 357
SatI GCNGC 2 cut(s) 204, 207
SchI GAGTC 2 cut(s) 231, 378
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 105, 188, 225, 246, 253, 285
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 175, 285
SmlI CTYRAG 2 cut(s) 239, 356
SmoI CTYRAG 2 cut(s) 239, 356
SsiI CCGC 3 cut(s) 55, 206, 325
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 46, 148
TaiI ACGT 2 cut(s) 105, 285
TaqI TCGA 3 cut(s) 174, 303, 413
TaqII GACCGA 1 cut(s) 399
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 11, 357
Tru9I TTAA 2 cut(s) 11, 357
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 64, 411
Van91I CCANNNNNTGG 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 356
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.