Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Forward (+)

10948333 .. 10953337

Gene Structure 5005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTATACACGACATTTGTGGGCCGGTATTAGCCGCGCCCTTTTAAAAGCAGCCACAAAATTTGGCGCTTTTCAATTTCTGAAATTTCAGAACCAAAAAAGAAGACGAAGAAAGGACTTGCTAGAGAGAGAGAGAGAGATGGTGGACATGGAGGATAACTTCCTTGATTTCGATTTAGAAGACCCACTTCTCACTCGCCCTGCAGTTACCAAGAGAAGGAGGAAGACTATTGGGTTGGATGACCTTTTGACTGACTTCTACAAGGAAGAAGACAAGCTTGTTGAAAAGGAAGCTAAGCTTGCAAAGGCACGAAGGAACAATGATTCAGATGAAGAAGATAATGACAAAGAGGCTGTGCTCTTTGACATTGTCGATAAGTGTGAAAGCGAGATGAGAGAAATAAGTGTTAAGGAGGAGAGCTTTGTGTGGGGCATATGCACTTTTGGAGATCAGAAGACCCCACCTTCTCTATCTTTTCCCGAGCTTAAAACTTGCAGGGTCTTGCAGTCATTCATGGATGATGAGCTCAATTCTTTGATTGATATCTCTACTGAAAATGGAGACACTTTCCTTGAACGATTATTAGTAAATGGCTGGCTATCAAAATTGATTTTCGCCAGTGGTCATCTAGAAAAATCAATAGCCACATGGACCTTTTATCTGATGTTATATTCGTCAAAAGAAAATTTGAGGGCATCTGCATGTGACTTCTGGTGTGCTATCCTCTCGTTTGAAAATGAGGTTGATTTACTGCCAGTCAAAATTGATTGGTTTCCTAGCTATTCTGAATTAAAAATAGCTCTTGAAAACTATGGATTTTTATTCAACTTTTCATCTAACACGGATTCTGCTCCTTCCAATTCTGCTCGTAGAGGTCCAGCTCCAAATATTAGAGCTTGGCTTAAATTTGTGACTGCTTCTTGTCAAAAGAGGAACAAAATGGCTATATACTTGACCTCAGAAGCTGAAGAGTTAATTGAAGTCATTATTTGTCTATTTTCTGATCGCCAACTTCAAGGTCTGTCCGTGCTTTTGCATGAGTGCATGCAGTCAGCTATCAGTTACTTCACTGAAAAAGAGTGGGAATCTAGCTGTGAAAAGATAGCAAATTCTCTTGCTTGCAGAGTTCCTAAAGACGTGACCTGCCTAAGAATTGTGGAATGCATCTCGGGAGTCGATACTCGTAGTAAGCTGTTTAGAAGTGCAATTGCCCATCAAATGCTTCTTAGCTGTTATGATCATCAGGCCCCTAATGATGAAGAGATCCTAAAATTGCTTATCCCAGTCAATGTGAAGGACAAAAAATGGGATTTTTCCAAGATGTACATACACTTGGTATTAGCCGAGAATTGGCTTTTGTCCAGTCAACTAGTAGAAGACAAGCCCGTCTTGAAAGCAATGTGGCGCCTCTACTTACGAAACTGTTCTTGCCTGATAGCCAGTACAGATTTGAGGTCTTTTGCATCGAAGGTCCGTAACAAGGCTTCGTACCTTCTGCAAGGCACCATCACAGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

507

Amino Acids

58.43

Weight (kDa)

5.69

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1385
Acc36I	ACCTGC	1 cut(s)	1151
AccB1I	GGYRCC	2 cut(s)	1404, 1502
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	1258
AcsI	RAATTY	5 cut(s)	59, 83, 685, 905, 1108
AcuI	CTGAAG	1 cut(s)	987
AcyI	GRCGYC	1 cut(s)	1405
AfaI	GTAC	3 cut(s)	1325, 1444, 1490
AfiI	CCNNNNNNNGG	3 cut(s)	216, 1350, 1480
AgsI	TTSAA	9 cut(s)	74, 284, 575, 734, 806, 826, 980, 1016, 1393
AhlI	ACTAGT	1 cut(s)	1369
AjiI	CACGTC	1 cut(s)	1138
Alw21I	GWGCWC	2 cut(s)	360, 528
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	1258
AlwNI	CAGNNNCTG	1 cut(s)	965
Ama87I	CYCGRG	2 cut(s)	479, 1168
AoxI	GGCC	2 cut(s)	21, 1245
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	5 cut(s)	59, 83, 685, 905, 1108
Asp700I	GAANNNNTTC	1 cut(s)	1423
AspLEI	GCGC	3 cut(s)	38, 68, 1407
AspS9I	GGNCC	5 cut(s)	21, 651, 875, 1246, 1471
AvaI	CYCGRG	2 cut(s)	479, 1168
AvaII	GGWCC	3 cut(s)	651, 875, 1471
BanI	GGYRCC	2 cut(s)	1404, 1502
BanII	GRGCYC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	1468, 1500
BbsI	GAAGAC	6 cut(s)	109, 186, 230, 276, 461, 1383
Bbv12I	GWGCWC	2 cut(s)	360, 528
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	133, 1221, 1514
BclI	TGATCA	1 cut(s)	1237
BcoDI	GTCTC	1 cut(s)	555
BcuI	ACTAGT	1 cut(s)	1369
BfaI	CTAG	5 cut(s)	122, 629, 777, 1089, 1370
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	69, 1408
BfuAI	ACCTGC	1 cut(s)	1151
BisI	GCNGC	2 cut(s)	34, 51
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	2 cut(s)	35, 52
Bme18I	GGWCC	3 cut(s)	651, 875, 1471
BmeT110I	CYCGRG	2 cut(s)	479, 1168
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	5 cut(s)	21, 651, 875, 1246, 1471
BmiI	GGNNCC	3 cut(s)	1248, 1406, 1504
BmrI	ACTGGG	1 cut(s)	1277
BmsI	GCATC	3 cut(s)	704, 1173, 1472
BmuI	ACTGGG	1 cut(s)	1277
BpiI	GAAGAC	6 cut(s)	109, 186, 230, 276, 461, 1383
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	1405
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 1350, 1480
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	5 cut(s)	618, 755, 1283, 1362, 1440
Bse3DI	GCAATG	1 cut(s)	1404
Bse8I	GATNNNNATC	1 cut(s)	542
BseGI	GGATG	2 cut(s)	244, 523
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	216, 1350, 1480
BseMI	GCAATG	1 cut(s)	1404
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	5 cut(s)	618, 755, 1283, 1362, 1440
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	23, 1247
BshNI	GGYRCC	2 cut(s)	1404, 1502
BsiHKAI	GWGCWC	2 cut(s)	360, 528
BsiHKCI	CYCGRG	2 cut(s)	479, 1168
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	216, 1350, 1480
BsmAI	GTCTC	1 cut(s)	555
BsmI	GAATGC	1 cut(s)	1166
BsnI	GGCC	2 cut(s)	23, 1247
BsoBI	CYCGRG	2 cut(s)	479, 1168
Bsp1286I	GDGCHC	2 cut(s)	360, 528
Bsp1407I	TGTACA	1 cut(s)	1323
Bsp143I	GATC	4 cut(s)	448, 1003, 1237, 1263
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	23, 1247
BspCNI	CTCAG	1 cut(s)	971
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	1248, 1406, 1504
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	1151
BspPI	GGATC	1 cut(s)	1258
BspT107I	GGYRCC	2 cut(s)	1404, 1502
BsrDI	GCAATG	1 cut(s)	1404
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	1323
BsrI	ACTGG	5 cut(s)	618, 755, 1283, 1362, 1440
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	4 cut(s)	448, 1003, 1237, 1263
BssNAI	GTATAC	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	1405
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	1424
Bst6I	CTCTTC	2 cut(s)	963, 1254
BstACI	GRCGYC	1 cut(s)	1405
BstAUI	TGTACA	1 cut(s)	1323
BstC8I	GCNNGC	4 cut(s)	300, 596, 1046, 1120
BstDEI	CTNAG	4 cut(s)	294, 958, 1148, 1226
BstF5I	GGATG	2 cut(s)	244, 523
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	69, 1408
BstHHI	GCGC	3 cut(s)	38, 68, 1407
BstKTI	GATC	4 cut(s)	451, 1006, 1240, 1266
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	4 cut(s)	448, 1003, 1237, 1263
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNSI	RCATGY	2 cut(s)	705, 1048
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	6 cut(s)	109, 186, 230, 276, 461, 1383
BstX2I	RGATCY	1 cut(s)	1263
BstYI	RGATCY	1 cut(s)	1263
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	23, 1247
BtrI	CACGTC	1 cut(s)	1138
BtsCI	GGATG	2 cut(s)	244, 523
BtsIMutI	CAGTG	2 cut(s)	625, 1068
BveI	ACCTGC	1 cut(s)	1151
Cac8I	GCNNGC	4 cut(s)	300, 596, 1046, 1120
CaiI	CAGNNNCTG	1 cut(s)	965
CfoI	GCGC	3 cut(s)	38, 68, 1407
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	21, 651, 875, 1246, 1471
Csp6I	GTAC	3 cut(s)	1324, 1443, 1489
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	6 cut(s)	148, 514, 648, 702, 1037, 1045
CviQI	GTAC	3 cut(s)	1324, 1443, 1489
DdeI	CTNAG	4 cut(s)	294, 958, 1148, 1226
DinI	GGCGCC	1 cut(s)	1406
DpnI	GATC	4 cut(s)	450, 1005, 1239, 1265
DpnII	GATC	4 cut(s)	448, 1003, 1237, 1263
DraI	TTTAAA	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	1385
DseDI	GACNNNNNNGTC	1 cut(s)	1385
Eam1104I	CTCTTC	2 cut(s)	963, 1254
EarI	CTCTTC	2 cut(s)	963, 1254
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	3 cut(s)	651, 875, 1471
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	987
Eco88I	CYCGRG	2 cut(s)	479, 1168
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	1246
EcoRV	GATATC	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	1166
EcoT38I	GRGCYC	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	1406
EheI	GGCGCC	1 cut(s)	1406
FaeI	CATG	6 cut(s)	151, 517, 651, 705, 1040, 1048
FalI	AAGNNNNNCTT	8 cut(s)	171, 203, 261, 293, 282, 314, 1373, 1405
FatI	CATG	6 cut(s)	147, 513, 647, 701, 1036, 1044
FauNDI	CATATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	1237
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	34, 51
FokI	GGATG	2 cut(s)	251, 530
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	34, 51
FspBI	CTAG	5 cut(s)	122, 629, 777, 1089, 1370
GlaI	GCGC	3 cut(s)	37, 67, 1406
GluI	GCNGC	2 cut(s)	34, 51
HaeII	RGCGCY	2 cut(s)	69, 1408
HaeIII	GGCC	2 cut(s)	23, 1247
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	3 cut(s)	38, 68, 1407
Hin1I	GRCGYC	1 cut(s)	1405
Hin1II	CATG	6 cut(s)	151, 517, 651, 705, 1040, 1048
Hin6I	GCGC	3 cut(s)	36, 66, 1405
HinP1I	GCGC	3 cut(s)	36, 66, 1405
HincII	GTYRAC	1 cut(s)	1367
HindII	GTYRAC	1 cut(s)	1367
HindIII	AAGCTT	2 cut(s)	275, 296
HinfI	GANTC	4 cut(s)	323, 845, 1085, 1173
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	3 cut(s)	6, 145, 1367
Hpy188I	TCNGA	8 cut(s)	81, 90, 328, 453, 663, 787, 961, 1003
Hpy188III	TCNNGA	5 cut(s)	479, 629, 803, 1170, 1390
Hpy8I	GTNNAC	3 cut(s)	6, 145, 1367
HpyAV	CCTTC	7 cut(s)	210, 306, 474, 864, 1288, 1462, 1502
HpyCH4III	ACNGT	1 cut(s)	1424
HpyCH4IV	ACGT	1 cut(s)	1137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	4 cut(s)	294, 958, 1148, 1226
HpySE526I	ACGT	1 cut(s)	1137
Hsp92I	GRCGYC	1 cut(s)	1405
Hsp92II	CATG	6 cut(s)	151, 517, 651, 705, 1040, 1048
HspAI	GCGC	3 cut(s)	36, 66, 1405
KasI	GGCGCC	1 cut(s)	1404
Ksp22I	TGATCA	1 cut(s)	1237
Kzo9I	GATC	4 cut(s)	448, 1003, 1237, 1263
LmnI	GCTCC	2 cut(s)	856, 886
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	3 cut(s)	704, 1173, 1472
MaeI	CTAG	5 cut(s)	122, 629, 777, 1089, 1370
MaeII	ACGT	1 cut(s)	1137
MaeIII	GTNAC	6 cut(s)	205, 704, 910, 1061, 1138, 1475
MalI	GATC	4 cut(s)	450, 1005, 1239, 1265
MboI	GATC	4 cut(s)	448, 1003, 1237, 1263
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	1 cut(s)	1263
MhlI	GDGCHC	2 cut(s)	360, 528
Mly113I	GGCGCC	1 cut(s)	1405
MlyI	GAGTC	1 cut(s)	1182
MmeI	TCCRAC	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	1166
MroXI	GAANNNNTTC	1 cut(s)	1423
MseI	TTAA	6 cut(s)	44, 408, 486, 791, 903, 974
MslI	CAYNNNNRTG	1 cut(s)	700
MspA1I	CMGCKG	1 cut(s)	1514
MspI	CCGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	1206
Mva1269I	GAATGC	1 cut(s)	1166
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	299
NarI	GGCGCC	1 cut(s)	1405
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	4 cut(s)	448, 1003, 1237, 1263
NlaIII	CATG	6 cut(s)	151, 517, 651, 705, 1040, 1048
NlaIV	GGNNCC	3 cut(s)	1248, 1406, 1504
NmeAIII	GCCGAG	1 cut(s)	1369
NmuCI	GTSAC	3 cut(s)	704, 910, 1138
NsiI	ATGCAT	1 cut(s)	1166
NspI	RCATGY	2 cut(s)	705, 1048
PaeI	GCATGC	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	1166
PdmI	GAANNNNTTC	1 cut(s)	1423
PfeI	GAWTC	3 cut(s)	323, 845, 1085
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	35, 52
PleI	GAGTC	1 cut(s)	1181
PluTI	GGCGCC	1 cut(s)	1408
PpsI	GAGTC	1 cut(s)	1181
Psp124BI	GAGCTC	1 cut(s)	528
PspN4I	GGNNCC	3 cut(s)	1248, 1406, 1504
PspPI	GGNCC	5 cut(s)	21, 651, 875, 1246, 1471
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	1263
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	1514
RsaI	GTAC	3 cut(s)	1325, 1444, 1490
RsaNI	GTAC	3 cut(s)	1324, 1443, 1489
RseI	CAYNNNNRTG	1 cut(s)	700
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	44, 408, 486, 791, 903, 974
SatI	GCNGC	2 cut(s)	34, 51
Sau3AI	GATC	4 cut(s)	448, 1003, 1237, 1263
Sau96I	GGNCC	5 cut(s)	21, 651, 875, 1246, 1471
SchI	GAGTC	1 cut(s)	1182
SduI	GDGCHC	2 cut(s)	360, 528
SfaNI	GCATC	3 cut(s)	704, 1173, 1472
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	1406
SinI	GGWCC	3 cut(s)	651, 875, 1471
SmiMI	CAYNNNNRTG	1 cut(s)	700
SpeI	ACTAGT	1 cut(s)	1369
SphI	GCATGC	1 cut(s)	1048
SsiI	CCGC	1 cut(s)	34
SspDI	GGCGCC	1 cut(s)	1404
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	5 cut(s)	122, 629, 777, 1089, 1370
SstI	GAGCTC	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	1424
TaiI	ACGT	1 cut(s)	1140
TaqI	TCGA	4 cut(s)	171, 372, 1176, 1466
TatI	WGTACW	2 cut(s)	1323, 1442
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	323, 845, 1085
Tru1I	TTAA	6 cut(s)	44, 408, 486, 791, 903, 974
Tru9I	TTAA	6 cut(s)	44, 408, 486, 791, 903, 974
TscAI	CASTG	2 cut(s)	625, 1075
TseFI	GTSAC	3 cut(s)	704, 910, 1138
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	3 cut(s)	704, 910, 1138
TspDTI	ATGAA	4 cut(s)	345, 502, 822, 1272
TspGWI	ACGGA	3 cut(s)	857, 1015, 1463
TspRI	CASTG	2 cut(s)	625, 1075
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	3 cut(s)	651, 875, 1471
XapI	RAATTY	5 cut(s)	59, 83, 685, 905, 1108
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	2 cut(s)	705, 1048
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	1423
XspI	CTAG	5 cut(s)	122, 629, 777, 1089, 1370
Zsp2I	ATGCAT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.