pycom11g14990

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014837
Physical Location & Seq
Reverse (-)
15410597 .. 15411109
513 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14990.1

Sequence Viewer

Length: 513 bp
ATGGATTTACAAGACATGAGTATTAGAGAGAGTTTGCATTTGAAACTAAATGCAAGTAACACATTGGATAAGCCTTTGGCTCGGTATGTATTTAAGCCATATGAGCGTAAAGATTTCTTGCATTGGTTGAAATCAATTAAATTTCCAGATGGTTATGCAGCAAATATATCACAAAAAGTGAATGTGGATGAAGGAAGTATATTTAGTTTGAAGAGTCATGATTGTCATGTGTTGATGCAACGTGTGCTTCCTGTGGGAATTCGAAAATACTTGAAAAAGCATATATATGGTCCGATTGTTGAGTTTTCTAGTTTTTTTCAAAAAATATGTGCAAAGGCTCTGACTATCACTGATCTTGACAAGTTGGAAGAAGACATTGTCCTCATATTGTGCGAACTAAAAATTTCCTGCCTGCATTCTTCGTTCCCATGGTTCATGATAGGGATTTTACCAACTGCAAAAGTAGGGATAAAAACACTTAAAAATACTTGCAAGAGTACAAGGTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4218 Transpos_assoc Transposase_21

Protein Analysis

171

Amino Acids

19.54

Weight (kDa)

9.27

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 140, 258, 402
AfaI GTAC 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 5 cut(s) 43, 130, 211, 274, 320
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 140, 258, 402
AspS9I GGNCC 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 143
BfaI CTAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 415
Bsp119I TTCGAA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 428
BspHI TCATGA 2 cut(s) 217, 435
BspT104I TTCGAA 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 103, 244
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 413
CciI TCATGA 2 cut(s) 217, 435
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 498
CviAII CATG 5 cut(s) 16, 218, 227, 429, 436
CviJI RGCY 4 cut(s) 73, 80, 97, 338
CviKI_1 RGCY 4 cut(s) 73, 80, 97, 338
CviQI GTAC 1 cut(s) 498
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 5 cut(s) 19, 221, 230, 432, 439
FatI CATG 5 cut(s) 15, 217, 226, 428, 435
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 309
GluI GCNGC 1 cut(s) 159
Hin1II CATG 5 cut(s) 19, 221, 230, 432, 439
HinfI GANTC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 294, 342
Hpy188III TCNNGA 4 cut(s) 146, 218, 356, 436
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 9 cut(s) 37, 53, 121, 158, 238, 332, 415, 458, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 244
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 5 cut(s) 19, 221, 230, 432, 439
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 4 cut(s) 159, 264, 421, 425
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 4 cut(s) 223, 380, 383, 411
MluCI AATT 4 cut(s) 135, 140, 258, 402
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 1 cut(s) 392
MseI TTAA 3 cut(s) 93, 138, 480
MslI CAYNNNNRTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 103, 244
NcoI CCATGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 100
NdeII GATC 1 cut(s) 352
NlaIII CATG 5 cut(s) 19, 221, 230, 432, 439
NspV TTCGAA 1 cut(s) 262
PagI TCATGA 2 cut(s) 217, 435
PctI GAATGC 1 cut(s) 415
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 290
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 93, 138, 480
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 223
SetI ASST 2 cut(s) 244, 506
SfaNI GCATC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 262
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 4 cut(s) 135, 140, 258, 402
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 428
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 262
TasI AATT 4 cut(s) 135, 140, 258, 402
TatI WGTACW 1 cut(s) 497
Tru1I TTAA 3 cut(s) 93, 138, 480
Tru9I TTAA 3 cut(s) 93, 138, 480
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 204, 424
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 3 cut(s) 140, 258, 402
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.