Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

25071682 .. 25075086

Gene Structure 3405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCACAAATGTTGGTTTATTTTTCTAGAGAGGGTGAGTTCACAGAACCATGCATCATGGATGAAGGGTATATCTCATTTTGGTGGTTGGACCTAGAGATAAAGCTAGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATGCAGGGAAAAGCACACTGTTGAGTGTTATAAGTGCTGCTCAGCCAACAGTAGCAAATTACCCCTTCACTACTTTACTTCCAAATCTGGGTGTTGTTTCTTTTGACTATGACTCGACGATGGTTGTAGCAGATCTACCGGGTTTACTTGAAGGTGCACACCGGGGTTTCGGATCGGGCCATGAGTTTCTGCACCACATTGAGAGGTGTTCTGTCTTGGTACATGTTGATGGCTCAGGCCTGCAGCCAGAATTTGAGTATGATGCAGTTCGTCTGGAATTGGAATTATTTAGTCCTGAAATTGCTGAAAAGCCTTATATAGTCGCTTTTAACAAAATGGACCTTCCAGATGCAAAAGAACAGCGGCCATCATTCAAGGAAAACTTACAAGCTCGCGGGATTCAAGTTTTTGGCACGAGTGCAGTGAAAGGAGAGGGTACTCATGAGGTTATCAGCACTACTTATCAGCTTCTACGAAGGAGCAAAGTGACCGAGGAGGAATTCAGAGGGAGGAGCTCATATTTGAGTGCGGTTCTAAAATGGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

229

Amino Acids

25.48

Weight (kDa)

4.92

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	39 - 158	7.3e-22	50S ribosome-binding GTPase
FeoB_N	PF02421	40 - 198	1.8e-12	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccII	CGCG	1 cut(s)	534
AciI	CCGC	3 cut(s)	502, 534, 668
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	2 cut(s)	389, 638
AfaI	GTAC	2 cut(s)	360, 577
AfiI	CCNNNNNNNGG	2 cut(s)	143, 227
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	290, 514, 542
AluBI	AGCT	4 cut(s)	106, 530, 607, 654
AluI	AGCT	4 cut(s)	106, 530, 607, 654
Alw21I	GWGCWC	2 cut(s)	298, 656
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	3 cut(s)	316, 376, 503
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	176, 382
ApoI	RAATTY	2 cut(s)	389, 638
AspS9I	GGNCC	3 cut(s)	91, 316, 478
AsuC2I	CCSGG	2 cut(s)	279, 302
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	91, 478
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	136, 656
BauI	CACGAG	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	298, 656
BbvI	GCAGC	2 cut(s)	163, 394
BccI	CCATC	3 cut(s)	253, 362, 514
BcnI	CCSGG	2 cut(s)	279, 302
BfaI	CTAG	3 cut(s)	27, 95, 107
BfmI	CTRYAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	177, 383, 503
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	3 cut(s)	178, 384, 504
Bme1390I	CCNGG	2 cut(s)	279, 302
Bme18I	GGWCC	2 cut(s)	91, 478
BmgT120I	GGNCC	3 cut(s)	91, 316, 478
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	279, 302
BmsI	GCATC	3 cut(s)	63, 391, 478
Bpu10I	CCTNAGC	1 cut(s)	373
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	279, 302
BsaJI	CCNNGG	2 cut(s)	301, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 227
BseDI	CCNNGG	2 cut(s)	301, 630
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	143, 227
BseMII	CTCAG	2 cut(s)	194, 387
BseRI	GAGGAG	2 cut(s)	647, 664
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	163, 394
BsgI	GTGCAG	2 cut(s)	314, 579
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	318, 378, 505
BsiHKAI	GWGCWC	2 cut(s)	298, 656
BsiSI	CCGG	2 cut(s)	278, 301
BslI	CCNNNNNNNGG	2 cut(s)	143, 227
BsnI	GGCC	3 cut(s)	318, 378, 505
Bsp1286I	GDGCHC	3 cut(s)	136, 298, 656
Bsp143I	GATC	2 cut(s)	271, 311
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	502, 534, 668
BspANI	GGCC	3 cut(s)	318, 378, 505
BspCNI	CTCAG	2 cut(s)	193, 386
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	301, 630
BssMI	GATC	2 cut(s)	271, 311
BssSI	CACGAG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	159, 190
BstC8I	GCNNGC	2 cut(s)	380, 532
BstDEI	CTNAG	2 cut(s)	180, 373
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	274, 314
BstMBI	GATC	2 cut(s)	271, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	277, 300
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	163, 394
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	318, 378, 505
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	155, 567
Cac8I	GCNNGC	2 cut(s)	380, 532
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	91, 316, 478
Csp6I	GTAC	2 cut(s)	359, 576
CviAII	CATG	5 cut(s)	51, 58, 320, 362, 581
CviQI	GTAC	2 cut(s)	359, 576
DdeI	CTNAG	2 cut(s)	180, 373
DpnI	GATC	2 cut(s)	273, 313
DpnII	GATC	2 cut(s)	271, 311
EaeI	YGGCCR	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	654
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	136, 656
Eco47I	GGWCC	2 cut(s)	91, 478
Eco53kI	GAGCTC	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	638
EcoT22I	ATGCAT	1 cut(s)	56
EcoT38I	GRGCYC	2 cut(s)	136, 656
FaeI	CATG	5 cut(s)	54, 61, 323, 365, 584
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FatI	CATG	5 cut(s)	50, 57, 319, 361, 580
FauI	CCCGC	1 cut(s)	527
Fnu4HI	GCNGC	3 cut(s)	177, 383, 503
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	136, 656
Fsp4HI	GCNGC	3 cut(s)	177, 383, 503
FspBI	CTAG	3 cut(s)	27, 95, 107
GluI	GCNGC	3 cut(s)	177, 383, 503
HaeIII	GGCC	3 cut(s)	318, 378, 505
HapII	CCGG	2 cut(s)	278, 301
Hin1II	CATG	5 cut(s)	54, 61, 323, 365, 584
HinfI	GANTC	2 cut(s)	251, 538
HpaII	CCGG	2 cut(s)	278, 301
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	42, 284, 296
Hpy188I	TCNGA	2 cut(s)	311, 644
Hpy188III	TCNNGA	5 cut(s)	27, 413, 434, 485, 581
Hpy8I	GTNNAC	3 cut(s)	42, 284, 296
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	5 cut(s)	59, 214, 284, 491, 609
HpyCH4III	ACNGT	2 cut(s)	159, 190
HpyCH4V	TGCA	9 cut(s)	54, 113, 143, 296, 331, 382, 404, 491, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	180, 373
Hsp92II	CATG	5 cut(s)	54, 61, 323, 365, 584
Kzo9I	GATC	2 cut(s)	271, 311
LmnI	GCTCC	3 cut(s)	131, 618, 651
Lsp1109I	GCAGC	2 cut(s)	163, 394
LweI	GCATC	3 cut(s)	63, 391, 478
MaeI	CTAG	3 cut(s)	27, 95, 107
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	273, 313
MboI	GATC	2 cut(s)	271, 311
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	3 cut(s)	136, 298, 656
MluCI	AATT	7 cut(s)	123, 196, 389, 416, 422, 438, 638
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	69, 100
MnlI	CCTC	8 cut(s)	25, 336, 565, 577, 625, 628, 638, 642
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	2 cut(s)	468, 688
MslI	CAYNNNNRTG	2 cut(s)	82, 366
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	278, 301
MspR9I	CCNGG	2 cut(s)	279, 302
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	2 cut(s)	279, 302
NdeII	GATC	2 cut(s)	271, 311
NlaIII	CATG	5 cut(s)	54, 61, 323, 365, 584
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	625
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	1 cut(s)	365
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	378
PciI	ACATGT	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	178, 384, 504
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	656
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	91, 316, 478
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	360, 577
RsaNI	GTAC	2 cut(s)	359, 576
RseI	CAYNNNNRTG	2 cut(s)	82, 366
SacI	GAGCTC	1 cut(s)	656
SaqAI	TTAA	2 cut(s)	468, 688
SatI	GCNGC	3 cut(s)	177, 383, 503
Sau3AI	GATC	2 cut(s)	271, 311
Sau96I	GGNCC	3 cut(s)	91, 316, 478
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	279, 302
SduI	GDGCHC	3 cut(s)	136, 298, 656
SetI	ASST	9 cut(s)	96, 108, 295, 347, 483, 532, 588, 609, 656
SfaNI	GCATC	3 cut(s)	63, 391, 478
SfcI	CTRYAG	1 cut(s)	380
SinI	GGWCC	2 cut(s)	91, 478
SmiMI	CAYNNNNRTG	2 cut(s)	82, 366
Sse9I	AATT	7 cut(s)	123, 196, 389, 416, 422, 438, 638
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	3 cut(s)	502, 534, 668
SspMI	CTAG	3 cut(s)	27, 95, 107
SstI	GAGCTC	1 cut(s)	656
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	277, 300
TaaI	ACNGT	2 cut(s)	159, 190
TaqI	TCGA	1 cut(s)	254
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	7 cut(s)	123, 196, 389, 416, 422, 438, 638
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	468, 688
Tru9I	TTAA	2 cut(s)	468, 688
TscAI	CASTG	2 cut(s)	162, 567
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	2 cut(s)	176, 382
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	162, 567
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	91, 478
XapI	RAATTY	2 cut(s)	389, 638
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	3 cut(s)	27, 95, 107
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.