Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

67053445 .. 67054881

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATGAAGGGTATATCTCATTTTGGTGGTTGGACCTGGAGATAAAGCTAGTTGCAGATGTTAGAATTGTGGGAGCCCCAAATGCAGGGAAAAGCACACTGTTGAGTGTTATAAGTGCTGCTCAGCCAACAATAGCAAATTACCCCTTCACTACTTTACTTCCAAATCTGGGTGTTGTTTCTTTTGACTATGACTCGACGATGGTTGTAGCAGATCTACCGGGTTTACTTGAAGGTGCACACTGGGGTTTCGGATCAGGCCATGAGTTTCTGCGCCACACTGAGAGGTGTTCTGTCTTGGTACATGTTGATGGCTCAGGCATGCAGCCAGAATTTGAGTATGATGCAGTTCGTCTGGAATTGGAATTGTTTAGTCCTGAAATTGCTGAAAAGCCTTATATAGTCGCTTTTAACAAAATGGACCTTCCAGATGCAAAAGAACAGTGGCCATCATTCAAGGAAAACTTACAAGCTCGCGGGATTCAAGTTTTTTGCACGAGTGCAGTGAAAGGAGAGGGTACTCATGAGGTTATCAGCACTACTTATCAGCTTCTACGAAGGAGCAAAGTGACCGAGGAGGAATTCAGAGGGAGGAGCTCATATTTGAGTGCGGTTCTAAAATGGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

211

Amino Acids

23.49

Weight (kDa)

4.95

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	21 - 139	2.6e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	21 - 179	1.6e-11	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AccII	CGCG	1 cut(s)	477
AciI	CCGC	2 cut(s)	477, 611
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	332, 581
AfaI	GTAC	2 cut(s)	303, 520
AfiI	CCNNNNNNNGG	2 cut(s)	86, 170
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	233, 457, 485
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	49, 473, 550, 597
AluI	AGCT	4 cut(s)	49, 473, 550, 597
Alw21I	GWGCWC	2 cut(s)	241, 599
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	2 cut(s)	259, 446
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	119, 325
ApoI	RAATTY	2 cut(s)	332, 581
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	34, 421
AsuC2I	CCSGG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	34, 421
BaeGI	GKGCMC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	79, 599
BauI	CACGAG	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	241, 599
BbvI	GCAGC	2 cut(s)	106, 337
BccI	CCATC	3 cut(s)	196, 305, 457
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	120, 326
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	121, 327
Bme1390I	CCNGG	2 cut(s)	38, 222
Bme18I	GGWCC	2 cut(s)	34, 421
BmgT120I	GGNCC	2 cut(s)	34, 421
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	38, 222
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	334, 421
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 170
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	86, 170
BseMII	CTCAG	3 cut(s)	137, 273, 330
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	590, 607
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	106, 337
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	261, 448
BsiHKAI	GWGCWC	2 cut(s)	241, 599
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	86, 170
BsnI	GGCC	2 cut(s)	261, 448
Bsp1286I	GDGCHC	3 cut(s)	79, 241, 599
Bsp143I	GATC	2 cut(s)	214, 254
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	477, 611
BspANI	GGCC	2 cut(s)	261, 448
BspCNI	CTCAG	3 cut(s)	136, 274, 329
BspFNI	CGCG	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	214, 254
BssSI	CACGAG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	102, 444
BstC8I	GCNNGC	2 cut(s)	323, 475
BstDEI	CTNAG	3 cut(s)	123, 282, 316
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	217, 257
BstMBI	GATC	2 cut(s)	214, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	308, 325
BstSCI	CCNGG	2 cut(s)	36, 220
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	106, 337
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	261, 448
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	5 cut(s)	98, 241, 279, 449, 510
Cac8I	GCNNGC	2 cut(s)	323, 475
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	34, 421
Csp6I	GTAC	2 cut(s)	302, 519
CviAII	CATG	4 cut(s)	263, 305, 322, 524
CviQI	GTAC	2 cut(s)	302, 519
DdeI	CTNAG	3 cut(s)	123, 282, 316
DpnI	GATC	2 cut(s)	216, 256
DpnII	GATC	2 cut(s)	214, 254
EaeI	YGGCCR	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	597
Eco24I	GRGCYC	2 cut(s)	79, 599
Eco47I	GGWCC	2 cut(s)	34, 421
Eco53kI	GAGCTC	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	79, 599
FaeI	CATG	4 cut(s)	266, 308, 325, 527
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	4 cut(s)	262, 304, 321, 523
FauI	CCCGC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	120, 326
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	79, 599
Fsp4HI	GCNGC	2 cut(s)	120, 326
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	120, 326
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	261, 448
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	266, 308, 325, 527
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	194, 481
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	227, 239
Hpy188I	TCNGA	2 cut(s)	254, 587
Hpy188III	TCNNGA	4 cut(s)	356, 377, 428, 524
Hpy8I	GTNNAC	2 cut(s)	227, 239
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	157, 227, 434, 552
HpyCH4III	ACNGT	2 cut(s)	102, 444
HpyCH4V	TGCA	8 cut(s)	56, 86, 239, 325, 347, 434, 495, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	123, 282, 316
Hsp92II	CATG	4 cut(s)	266, 308, 325, 527
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	214, 254
LmnI	GCTCC	3 cut(s)	74, 561, 594
Lsp1109I	GCAGC	2 cut(s)	106, 337
LweI	GCATC	2 cut(s)	334, 421
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	216, 256
MboI	GATC	2 cut(s)	214, 254
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	3 cut(s)	79, 241, 599
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	7 cut(s)	66, 139, 332, 359, 365, 381, 581
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	279, 508, 520, 568, 571, 581, 585
Mox20I	TGGCCA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	2 cut(s)	411, 631
MslI	CAYNNNNRTG	2 cut(s)	25, 309
Msp20I	TGGCCA	1 cut(s)	448
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	38, 222
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	214, 254
NlaIII	CATG	4 cut(s)	266, 308, 325, 527
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	2 cut(s)	308, 325
PaeI	GCATGC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	121, 327
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	34, 421
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	303, 520
RsaNI	GTAC	2 cut(s)	302, 519
RseI	CAYNNNNRTG	2 cut(s)	25, 309
SacI	GAGCTC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	411, 631
SatI	GCNGC	2 cut(s)	120, 326
Sau3AI	GATC	2 cut(s)	214, 254
Sau96I	GGNCC	2 cut(s)	34, 421
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	38, 222
SduI	GDGCHC	3 cut(s)	79, 241, 599
SetI	ASST	9 cut(s)	39, 51, 238, 290, 426, 475, 531, 552, 599
SfaNI	GCATC	2 cut(s)	334, 421
SinI	GGWCC	2 cut(s)	34, 421
SmiMI	CAYNNNNRTG	2 cut(s)	25, 309
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	7 cut(s)	66, 139, 332, 359, 365, 381, 581
SsiI	CCGC	2 cut(s)	477, 611
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	36, 220
TaaI	ACNGT	2 cut(s)	102, 444
TaqI	TCGA	1 cut(s)	197
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	7 cut(s)	66, 139, 332, 359, 365, 381, 581
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	411, 631
Tru9I	TTAA	2 cut(s)	411, 631
TscAI	CASTG	5 cut(s)	105, 248, 286, 449, 510
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	119, 325
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	5 cut(s)	105, 248, 286, 449, 510
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	34, 421
XapI	RAATTY	2 cut(s)	332, 581
XceI	RCATGY	2 cut(s)	308, 325
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.