Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

20712468 .. 20713704

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATGAAGGGTGGTTGAATCTGGAGATAAAGCTAGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATGCAGGGAAAAGCACACTGTTGAGTGTTATAAGTGCTACTAAGCCAACAATAGCAAATTACCCCTTCACTACTTTACTTCCAAATATGGGTGTTGTTTCTCTTGATTATGACTCGACGATGGTTGTAGCAGATCTACCGGGTTTACTTGAAGGTGCACACCGAGGTTTCGGATCGGGCCATGAGTTTCTGCGCCACACTGAGAGGTGTTCTGTCTTGGTACATGTTGATGGCTTAGGCCTGCAGCCAGAATTTGAGTATGATGCAGTTCGTCTGGAATTGGAATTGTTTAGTCCTAAAATTGCTGAAAAGCCTTATATAGTTGCTTTTAACAAAATGGACCTTCCAGATGCAAAAGAACAGTGGCCATCATTCAAGGAAAACTTACAAGCTCGCGGGATTCAAGTTTTTTGCACGAGTGCAGTGAAAGGAGAGGGTACTCATGAGGTTATCAACACTACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

177

Amino Acids

19.38

Weight (kDa)

4.95

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	15 - 134	5.6e-22	50S ribosome-binding GTPase
FeoB_N	PF02421	16 - 174	5.6e-12	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccII	CGCG	1 cut(s)	462
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	2 cut(s)	288, 505
AfiI	CCNNNNNNNGG	2 cut(s)	71, 155
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	19, 218, 442, 470
AluBI	AGCT	2 cut(s)	34, 458
AluI	AGCT	2 cut(s)	34, 458
Alw21I	GWGCWC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	3 cut(s)	244, 304, 431
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	244, 406
AsuC2I	CCSGG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	3 cut(s)	181, 290, 442
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	244, 406
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	319, 406
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 155
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	71, 155
BseMII	CTCAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	246, 306, 433
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	71, 155
BsnI	GGCC	3 cut(s)	246, 306, 433
Bsp1286I	GDGCHC	2 cut(s)	64, 226
Bsp143I	GATC	2 cut(s)	199, 239
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	3 cut(s)	246, 306, 433
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	199, 239
BssSI	CACGAG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	481
Bst4CI	ACNGT	2 cut(s)	87, 429
BstC8I	GCNNGC	2 cut(s)	308, 460
BstDEI	CTNAG	3 cut(s)	108, 267, 301
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	202, 242
BstMBI	GATC	2 cut(s)	199, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	246, 306, 433
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	4 cut(s)	83, 264, 434, 495
Cac8I	GCNNGC	2 cut(s)	308, 460
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	244, 406
Csp6I	GTAC	2 cut(s)	287, 504
CviAII	CATG	3 cut(s)	248, 290, 509
CviQI	GTAC	2 cut(s)	287, 504
DdeI	CTNAG	3 cut(s)	108, 267, 301
DpnI	GATC	2 cut(s)	201, 241
DpnII	GATC	2 cut(s)	199, 239
EaeI	YGGCCR	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	3 cut(s)	251, 293, 512
FaiI	YATR	9 cut(s)	98, 155, 177, 249, 291, 327, 384, 386, 510
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	3 cut(s)	247, 289, 508
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	3 cut(s)	246, 306, 433
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	251, 293, 512
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	19, 179, 466
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	212, 224
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	5 cut(s)	23, 170, 341, 413, 509
Hpy8I	GTNNAC	2 cut(s)	212, 224
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	142, 212, 419
HpyCH4III	ACNGT	2 cut(s)	87, 429
HpyCH4V	TGCA	8 cut(s)	41, 71, 224, 310, 332, 419, 480, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	108, 267, 301
Hsp92II	CATG	3 cut(s)	251, 293, 512
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	199, 239
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	8, 57, 219, 320, 326, 327, 426
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	319, 406
MaeI	CTAG	1 cut(s)	35
MalI	GATC	2 cut(s)	201, 241
MboI	GATC	2 cut(s)	199, 239
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	64, 226
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	6 cut(s)	51, 124, 317, 344, 350, 366
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	224, 264, 493, 505
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	433
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	199, 239
NlaIII	CATG	3 cut(s)	251, 293, 512
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	306
PciI	ACATGT	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	19, 466
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	289
PsiI	TTATAA	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	244, 406
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	288, 505
RsaNI	GTAC	2 cut(s)	287, 504
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	199, 239
Sau96I	GGNCC	2 cut(s)	244, 406
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	64, 226
SetI	ASST	7 cut(s)	36, 223, 235, 275, 411, 460, 516
SfaNI	GCATC	2 cut(s)	319, 406
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	6 cut(s)	51, 124, 317, 344, 350, 366
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	87, 429
TaqI	TCGA	1 cut(s)	182
TasI	AATT	6 cut(s)	51, 124, 317, 344, 350, 366
TfiI	GAWTC	2 cut(s)	19, 466
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	4 cut(s)	90, 271, 434, 495
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	4 cut(s)	90, 271, 434, 495
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.