Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

31290849 .. 31299142

Gene Structure 8294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTACAGGAAAGATGATGTCTGGGTAGGCCGTCTAATTTCGGGTTATTCGTTACCAATGGAAGATCCGAGCCAGTCCAAGACAGAAACAAATACAAAAGATATCGGTGGAACTTGGAAACAATCAATCAAAGTAGCATTTGAGGCTACGCAATCGGCTTTCCCTGGTGGAGAGCCTTCTGTTCTGTGGTTGGACCTGGAGATAAAGCTGGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATACAGGGAAAAGCACACTATTGAGTGTTATAAGTGCTGCTCAGCCAACAATAGCAAATTACCCCTTCACTACTTTACTTCCAAATCTGGGTGTTGTTTCTTTTGACTATGACTCGACAATGGTTGTAGCAGATCTACCGGGTTTACTTGAAGGTGCACACTGGGGTTTCGGATCGGGCCATGAGTTTCTGCGCCATACTGAGAGGTGTTCTGTCTTCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

154

Amino Acids

16.66

Weight (kDa)

4.9

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	73 - 152	7e-17	50S ribosome-binding GTPase
FeoB_N	PF02421	74 - 129	1.7e-08	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AclWI	GGATC	2 cut(s)	59, 421
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	245, 329
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	2 cut(s)	163, 195
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	400
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	59, 421
AoxI	GGCC	2 cut(s)	28, 418
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	193, 418
AsuC2I	CCSGG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	165, 197
BcnI	CCSGG	1 cut(s)	381
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	165, 197, 381
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 418
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	165, 197, 381
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 329
Bse1I	ACTGG	2 cut(s)	73, 407
BseBI	CCWGG	2 cut(s)	165, 197
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	245, 329
BseMII	CTCAG	2 cut(s)	296, 432
BseNI	ACTGG	2 cut(s)	73, 407
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	30, 420
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	245, 329
BsnI	GGCC	2 cut(s)	30, 420
Bsp1286I	GDGCHC	2 cut(s)	238, 400
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	64, 373, 413
Bsp1720I	GCTNAGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	30, 420
BspCNI	CTCAG	2 cut(s)	295, 433
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	59, 421
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	73, 407
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	64, 373, 413
Bst2UI	CCWGG	2 cut(s)	165, 197
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	282, 441
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	67, 376, 416
BstMBI	GATC	3 cut(s)	64, 373, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	165, 197
BstSCI	CCNGG	3 cut(s)	163, 195, 379
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	2 cut(s)	64, 373
BstYI	RGATCY	2 cut(s)	64, 373
BsuRI	GGCC	2 cut(s)	30, 420
BtsIMutI	CAGTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	193, 418
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	9 cut(s)	30, 72, 146, 158, 175, 208, 236, 286, 420
CviKI_1	RGCY	9 cut(s)	30, 72, 146, 158, 175, 208, 236, 286, 420
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	282, 441
DpnI	GATC	3 cut(s)	66, 375, 415
DpnII	GATC	3 cut(s)	64, 373, 413
Eco24I	GRGCYC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	163, 195
EcoRV	GATATC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	1 cut(s)	425
FaiI	YATR	5 cut(s)	272, 351, 423, 438, 463
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	30, 420
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	386, 398
Hpy188I	TCNGA	2 cut(s)	69, 413
Hpy8I	GTNNAC	2 cut(s)	386, 398
HpyAV	CCTTC	3 cut(s)	186, 316, 386
HpyCH4V	TGCA	2 cut(s)	215, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	282, 441
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	64, 373, 413
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	66, 375, 415
MboI	GATC	3 cut(s)	64, 373, 413
MboII	GAAGA	2 cut(s)	74, 448
MflI	RGATCY	2 cut(s)	64, 373
MhlI	GDGCHC	2 cut(s)	238, 400
MluCI	AATT	3 cut(s)	36, 225, 298
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	171, 202
MnlI	CCTC	2 cut(s)	136, 438
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	165, 197, 381
MvaI	CCWGG	2 cut(s)	165, 197
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	64, 373, 413
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	163, 195
PspGI	CCWGG	2 cut(s)	163, 195
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	193, 418
PsuI	RGATCY	2 cut(s)	64, 373
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	64, 373, 413
Sau96I	GGNCC	2 cut(s)	193, 418
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	165, 197, 381
SduI	GDGCHC	2 cut(s)	238, 400
SetI	ASST	4 cut(s)	198, 210, 397, 449
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	36, 225, 298
StyD4I	CCNGG	3 cut(s)	163, 195, 379
TaqI	TCGA	1 cut(s)	356
TasI	AATT	3 cut(s)	36, 225, 298
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	1 cut(s)	407
TseI	GCWGC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.