Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004178.1

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Reverse (-)

33613 .. 39310

Gene Structure 5698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004178.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgaacattgatggtaaaacaaaagattctttaaatgctcgtcttgatctccaagctatggatataaggaaagcttactggcctagaaaggaggatggcaaactagtttatgatccggcaccttttgaattgtcagctgttgatatcaaagctatatgtgaatggttactgaacttgaaagttcctgatggatattgttcaaatgtatctcgttggatcaatgctaaaccacgcagtatttctggcatgaagagtcatgattgccatgttttcttagagagactacttccgcttgtggtgcgagagttactgcccaaaaaaccttgtgaagcattgattgagctttcttacttttttagagaattgtgtgctaaagtactgagggtctcggatttggaacttctgaaaaataaaattgccataactctatgcaagttggaaatgatatttcctcctgcattttttgacatcatggttcatttgtcaattcacttggcgtgggaagcaaaagtatgtgggcctgtgcagtatagatggatgtatcccattgaaaggtacttgcataagttaaatacttatgttcgtaataaagcctatccagaaggttctcttgccgaaggttatttggcagaagagttaatgactgaagagcttcatcatgctgccacccattatgtcctgacaaattgtgatgagtgtttgccttttattgagtggttggacttggagataaagctagttgcagatgttggaattgtggaagccccaaatgtagggaaaagcacactgttgagtgttataagtgctgctcaaccaacaatagcaaattaccccttcactacttttcttccaaatctgggtgttgtttcttttgactatgactcgacgatggttgtagcagatctaccgggtttacttgaaggtgcacaccggggtttcggatctggccatgagtttctgcgccacactgagaggtgttctgtcttggtacatgttgatggctcaggcctgcagccagaatttgagtatgatgcagttcgtctggaattgcaattgtttagtcctgaaattgttgaaaagccttatatagccgcttttaacaaaatgggccttccaaatgcaaaagaacagtggccatcattcaaggaaaacttacaagctcgcgggattcaagttttttgcacgagtgcagtgaaaggagagggtactcatgagagtggaatcacgcgaaagaaggagaagaaggatctgggtttgcgtttgttttggattgcgcatgacaccatacatcttgagttcagaaatactgcagttatgtatagtgggaagagtatgaggcgctgcaatcataactcatgcaggccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

455

Amino Acids

51.76

Weight (kDa)

6.48

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
Acc16I	TGCGCA	1 cut(s)	1275
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	2 cut(s)	1164, 1228
AciI	CCGC	3 cut(s)	290, 1092, 1164
AclWI	GGATC	4 cut(s)	107, 224, 949, 1254
AcoI	YGGCCR	2 cut(s)	946, 1133
AcsI	RAATTY	1 cut(s)	1019
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	4 cut(s)	378, 557, 990, 1207
AfiI	CCNNNNNNNGG	4 cut(s)	58, 552, 773, 857
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	8 cut(s)	128, 178, 201, 551, 920, 1076, 1144, 1172
AhlI	ACTAGT	1 cut(s)	103
AluBI	AGCT	8 cut(s)	56, 74, 137, 152, 343, 652, 736, 1160
AluI	AGCT	8 cut(s)	56, 74, 137, 152, 343, 652, 736, 1160
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	2 cut(s)	274, 391
Alw44I	GTGCAC	1 cut(s)	924
AlwI	GGATC	4 cut(s)	107, 224, 949, 1254
AlwNI	CAGNNNCTG	1 cut(s)	1365
AoxI	GGCC	7 cut(s)	80, 518, 946, 1006, 1108, 1133, 1361
ApaLI	GTGCAC	1 cut(s)	924
ApeKI	GCWGC	4 cut(s)	662, 806, 1012, 1341
ApoI	RAATTY	1 cut(s)	1019
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	3 cut(s)	963, 1276, 1341
AspS9I	GGNCC	3 cut(s)	518, 1108, 1362
AsuC2I	CCSGG	2 cut(s)	909, 932
BaeGI	GKGCMC	1 cut(s)	928
BalI	TGGCCA	2 cut(s)	948, 1135
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	1183
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	4 cut(s)	649, 793, 1024, 1328
BccI	CCATC	7 cut(s)	5, 89, 182, 528, 883, 992, 1144
BciVI	GTATCC	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	909, 932
BcoDI	GTCTC	2 cut(s)	274, 391
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	3 cut(s)	84, 104, 737
BfmI	CTRYAG	2 cut(s)	1010, 1308
BfoI	RGCGCY	1 cut(s)	1342
BfuI	GTATCC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	901
BisI	GCNGC	5 cut(s)	663, 807, 1013, 1092, 1342
BlsI	GCNGC	5 cut(s)	664, 808, 1014, 1093, 1343
BmcAI	AGTACT	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	909, 932
BmgT120I	GGNCC	3 cut(s)	518, 1108, 1362
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	909, 932
BmsI	GCATC	1 cut(s)	1021
Bpu10I	CCTNAGC	1 cut(s)	1003
BpuEI	CTTGAG	1 cut(s)	1313
BpuMI	CCSGG	2 cut(s)	909, 932
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 552, 773, 857
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	2 cut(s)	100, 543
BseLI	CCNNNNNNNGG	4 cut(s)	58, 552, 773, 857
BseMII	CTCAG	3 cut(s)	371, 960, 1017
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	4 cut(s)	649, 793, 1024, 1328
BsgI	GTGCAG	2 cut(s)	545, 1209
Bsh1236I	CGCG	2 cut(s)	1164, 1228
BshFI	GGCC	7 cut(s)	82, 520, 948, 1008, 1110, 1135, 1363
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	116, 908, 931
BslI	CCNNNNNNNGG	4 cut(s)	58, 552, 773, 857
BsmAI	GTCTC	2 cut(s)	274, 391
BsnI	GGCC	7 cut(s)	82, 520, 948, 1008, 1110, 1135, 1363
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp143I	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
BspACI	CCGC	3 cut(s)	290, 1092, 1164
BspANI	GGCC	7 cut(s)	82, 520, 948, 1008, 1110, 1135, 1363
BspCNI	CTCAG	3 cut(s)	372, 961, 1016
BspFNI	CGCG	2 cut(s)	1164, 1228
BspHI	TCATGA	2 cut(s)	256, 1210
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	1014, 1312
BspPI	GGATC	4 cut(s)	107, 224, 949, 1254
BspQI	GCTCTTC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
BssSI	CACGAG	1 cut(s)	1183
Bst2BI	CACGAG	1 cut(s)	1183
Bst4CI	ACNGT	2 cut(s)	789, 1131
Bst6I	CTCTTC	4 cut(s)	245, 627, 642, 1322
BstC8I	GCNNGC	3 cut(s)	1010, 1162, 1361
BstDEI	CTNAG	4 cut(s)	274, 380, 969, 1003
BstF5I	GGATG	2 cut(s)	100, 543
BstFNI	CGCG	2 cut(s)	1164, 1228
BstH2I	RGCGCY	1 cut(s)	1342
BstHHI	GCGC	3 cut(s)	963, 1276, 1341
BstKTI	GATC	6 cut(s)	49, 115, 219, 904, 944, 1249
BstMAI	GTCTC	2 cut(s)	274, 391
BstMBI	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 503
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	2 cut(s)	907, 930
BstSFI	CTRYAG	2 cut(s)	1010, 1308
BstSLI	GKGCMC	1 cut(s)	928
BstUI	CGCG	2 cut(s)	1164, 1228
BstV1I	GCAGC	4 cut(s)	649, 793, 1024, 1328
BstX2I	RGATCY	3 cut(s)	901, 941, 1246
BstYI	RGATCY	3 cut(s)	901, 941, 1246
BsuI	GTATCC	1 cut(s)	552
BsuRI	GGCC	7 cut(s)	82, 520, 948, 1008, 1110, 1135, 1363
BtsCI	GGATG	2 cut(s)	100, 543
BtsI	GCAGTG	1 cut(s)	1197
BtsIMutI	CAGTG	4 cut(s)	785, 966, 1136, 1197
Cac8I	GCNNGC	3 cut(s)	1010, 1162, 1361
CaiI	CAGNNNCTG	1 cut(s)	1365
CciI	TCATGA	2 cut(s)	256, 1210
CfoI	GCGC	3 cut(s)	963, 1276, 1341
Cfr13I	GGNCC	3 cut(s)	518, 1108, 1362
Csp6I	GTAC	4 cut(s)	377, 556, 989, 1206
CviQI	GTAC	4 cut(s)	377, 556, 989, 1206
DdeI	CTNAG	4 cut(s)	274, 380, 969, 1003
DpnI	GATC	6 cut(s)	48, 114, 218, 903, 943, 1248
DpnII	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
DraI	TTTAAA	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	946, 1133
Eam1104I	CTCTTC	4 cut(s)	245, 627, 642, 1322
EarI	CTCTTC	4 cut(s)	245, 627, 642, 1322
Eco147I	AGGCCT	1 cut(s)	1008
Eco31I	GGTCTC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	1362
EcoRV	GATATC	1 cut(s)	145
FalI	AAGNNNNNCTT	6 cut(s)	58, 90, 594, 626, 1136, 1168
FauI	CCCGC	1 cut(s)	1157
Fnu4HI	GCNGC	5 cut(s)	663, 807, 1013, 1092, 1342
FokI	GGATG	2 cut(s)	107, 550
Fsp4HI	GCNGC	5 cut(s)	663, 807, 1013, 1092, 1342
FspBI	CTAG	3 cut(s)	84, 104, 737
FspI	TGCGCA	1 cut(s)	1275
GlaI	GCGC	3 cut(s)	962, 1275, 1340
GluI	GCNGC	5 cut(s)	663, 807, 1013, 1092, 1342
HaeII	RGCGCY	1 cut(s)	1342
HaeIII	GGCC	7 cut(s)	82, 520, 948, 1008, 1110, 1135, 1363
HapII	CCGG	3 cut(s)	116, 908, 931
HhaI	GCGC	3 cut(s)	963, 1276, 1341
Hin6I	GCGC	3 cut(s)	961, 1274, 1339
HinP1I	GCGC	3 cut(s)	961, 1274, 1339
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	5 cut(s)	26, 253, 881, 1168, 1221
HpaII	CCGG	3 cut(s)	116, 908, 931
Hpy166II	GTNNAC	2 cut(s)	914, 926
Hpy188I	TCNGA	4 cut(s)	391, 405, 941, 1301
Hpy188III	TCNNGA	9 cut(s)	44, 185, 257, 599, 679, 1043, 1064, 1211, 1292
Hpy8I	GTNNAC	2 cut(s)	914, 926
Hpy99I	CGWCG	1 cut(s)	889
HpyAV	CCTTC	7 cut(s)	596, 611, 844, 914, 1121, 1228, 1237
HpyCH4III	ACNGT	2 cut(s)	789, 1131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 503
HpyF3I	CTNAG	4 cut(s)	274, 380, 969, 1003
HspAI	GCGC	3 cut(s)	961, 1274, 1339
Kzo9I	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
LguI	GCTCTTC	1 cut(s)	642
Lsp1109I	GCAGC	4 cut(s)	649, 793, 1024, 1328
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	3 cut(s)	84, 104, 737
MaeIII	GTNAC	2 cut(s)	165, 306
MalI	GATC	6 cut(s)	48, 114, 218, 903, 943, 1248
MboI	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
MboII	GAAGA	6 cut(s)	262, 644, 659, 839, 1252, 1339
MfeI	CAATTG	1 cut(s)	1052
MflI	RGATCY	3 cut(s)	901, 941, 1246
MhlI	GDGCHC	1 cut(s)	928
MlsI	TGGCCA	2 cut(s)	948, 1135
MluNI	TGGCCA	2 cut(s)	948, 1135
MlyI	GAGTC	2 cut(s)	262, 875
MmeI	TCCRAC	4 cut(s)	194, 417, 699, 730
MnlI	CCTC	6 cut(s)	85, 375, 462, 966, 1195, 1329
Mox20I	TGGCCA	2 cut(s)	948, 1135
MroXI	GAANNNNTTC	1 cut(s)	651
MscI	TGGCCA	2 cut(s)	948, 1135
MseI	TTAA	4 cut(s)	32, 569, 638, 1098
MslI	CAYNNNNRTG	2 cut(s)	996, 1215
Msp20I	TGGCCA	2 cut(s)	948, 1135
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	116, 908, 931
MspR9I	CCNGG	2 cut(s)	909, 932
MunI	CAATTG	1 cut(s)	1052
MvnI	CGCG	2 cut(s)	1164, 1228
MwoI	GCNNNNNNNGC	2 cut(s)	298, 503
NciI	CCSGG	2 cut(s)	909, 932
NdeII	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
NlaIV	GGNNCC	1 cut(s)	120
NsbI	TGCGCA	1 cut(s)	1275
NspI	RCATGY	1 cut(s)	995
PagI	TCATGA	2 cut(s)	256, 1210
PceI	AGGCCT	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	991
PciSI	GCTCTTC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	26, 1168, 1221
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	5 cut(s)	664, 808, 1014, 1093, 1343
PleI	GAGTC	2 cut(s)	261, 875
PpsI	GAGTC	2 cut(s)	261, 875
PscI	ACATGT	1 cut(s)	991
PsiI	TTATAA	1 cut(s)	800
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	518, 1108, 1362
PstI	CTGCAG	2 cut(s)	1014, 1312
PstNI	CAGNNNCTG	1 cut(s)	1365
PsuI	RGATCY	3 cut(s)	901, 941, 1246
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	378, 557, 990, 1207
RsaNI	GTAC	4 cut(s)	377, 556, 989, 1206
RseI	CAYNNNNRTG	2 cut(s)	996, 1215
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	4 cut(s)	32, 569, 638, 1098
SatI	GCNGC	5 cut(s)	663, 807, 1013, 1092, 1342
Sau3AI	GATC	6 cut(s)	46, 112, 216, 901, 941, 1246
Sau96I	GGNCC	3 cut(s)	518, 1108, 1362
ScaI	AGTACT	1 cut(s)	378
SchI	GAGTC	2 cut(s)	262, 875
ScrFI	CCNGG	2 cut(s)	909, 932
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	1 cut(s)	1021
SfcI	CTRYAG	2 cut(s)	1010, 1308
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1215
SmlI	CTYRAG	1 cut(s)	1292
SmoI	CTYRAG	1 cut(s)	1292
SpeI	ACTAGT	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	1008
SsiI	CCGC	3 cut(s)	290, 1092, 1164
SspMI	CTAG	3 cut(s)	84, 104, 737
StuI	AGGCCT	1 cut(s)	1008
StyD4I	CCNGG	2 cut(s)	907, 930
TaaI	ACNGT	2 cut(s)	789, 1131
TaqI	TCGA	1 cut(s)	884
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	1094
TfiI	GAWTC	3 cut(s)	26, 1168, 1221
Tru1I	TTAA	4 cut(s)	32, 569, 638, 1098
Tru9I	TTAA	4 cut(s)	32, 569, 638, 1098
TscAI	CASTG	4 cut(s)	792, 973, 1136, 1197
TseI	GCWGC	4 cut(s)	662, 806, 1012, 1341
TspDTI	ATGAA	4 cut(s)	17, 263, 467, 644
TspRI	CASTG	4 cut(s)	792, 973, 1136, 1197
Van91I	CCANNNNNTGG	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	924
XapI	RAATTY	1 cut(s)	1019
XceI	RCATGY	1 cut(s)	995
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	3 cut(s)	84, 104, 737
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.