Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

18022067 .. 18023299

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAATCAGGTGGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATGTTGAATCATTGGACCTGGAGATCAAGCTAGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATGCAGAGAAAAGCACACTGTTGAGTGTTATAAGTGCTGCTCAGCCAACAATAGCAAATTACCCCTTCACTACTTTACTTCCAAATCTGGGTGTTGTTTCTTTTGACTATGACTCGACGATGGTTGTAGCAGATCTACTGGGTTTACTTGAAGGTGCACACCGGGGTTTCGGATCGGGCCATGAGTTTCTGCTCCACACTGAGAGGTGTTCTGTCTTGGTACATGTTGATGGCTCAGGCCTGCAGCCAGAATTTGAGTATGATGCAGTTCATCTGGAATTGGAATTGTTTAGTCCTGAAATTGCTGAAAAGCCTTATATAGTTGCTTTTAACAAAATGGACCTTCCAGATGCAAAAGAACAGTGGCCATCATTCAAGGAAAACTTACAAGCTCGCGGGATTCAAGTTTTTTGCACGAGTGCAGTGAAAGGAGAGGGTACTCATGAGGTTATCAGCACTACTTATCAGCTTCTACGAAGGAGCAAAGTGACCGAGGAGGAATTCAGAGGGAGGAGCTCATATTTGAGTGCGGTTCTAAAATGGAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

218

Amino Acids

23.84

Weight (kDa)

4.8

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	28 - 147	1.2e-16	50S ribosome-binding GTPase
FeoB_N	PF02421	29 - 187	7.9e-09	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccII	CGCG	1 cut(s)	501
AciI	CCGC	2 cut(s)	501, 635
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	356, 605
AfaI	GTAC	2 cut(s)	327, 544
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	50, 257, 481, 509
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	73, 497, 574, 621
AluI	AGCT	4 cut(s)	73, 497, 574, 621
Alw21I	GWGCWC	2 cut(s)	265, 623
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	3 cut(s)	283, 343, 470
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	143, 349
ApoI	RAATTY	2 cut(s)	356, 605
AspS9I	GGNCC	3 cut(s)	58, 283, 445
AsuC2I	CCSGG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	58, 445
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	472
BanII	GRGCYC	3 cut(s)	40, 103, 623
BauI	CACGAG	1 cut(s)	520
Bbv12I	GWGCWC	2 cut(s)	265, 623
BbvI	GCAGC	2 cut(s)	130, 361
BccI	CCATC	3 cut(s)	220, 329, 481
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	144, 350
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	2 cut(s)	145, 351
Bme1390I	CCNGG	2 cut(s)	62, 269
Bme18I	GGWCC	2 cut(s)	58, 445
BmgT120I	GGNCC	3 cut(s)	58, 283, 445
BmiI	GGNNCC	2 cut(s)	37, 100
BmrFI	CCNGG	2 cut(s)	62, 269
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	358, 445
BmuI	ACTGGG	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	268, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	268, 597
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	161, 297, 354
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	614, 631
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	130, 361
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	285, 345, 472
BsiHKAI	GWGCWC	2 cut(s)	265, 623
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	3 cut(s)	285, 345, 472
Bsp1286I	GDGCHC	4 cut(s)	40, 103, 265, 623
Bsp143I	GATC	3 cut(s)	66, 238, 278
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	501, 635
BspANI	GGCC	3 cut(s)	285, 345, 472
BspCNI	CTCAG	3 cut(s)	160, 298, 353
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	37, 100
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	268, 597
BssMI	GATC	3 cut(s)	66, 238, 278
BssSI	CACGAG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	126, 468
BstC8I	GCNNGC	2 cut(s)	347, 499
BstDEI	CTNAG	3 cut(s)	147, 306, 340
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	3 cut(s)	69, 241, 281
BstMBI	GATC	3 cut(s)	66, 238, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	60, 267
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	130, 361
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	285, 345, 472
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	122, 303, 473, 534
Cac8I	GCNNGC	2 cut(s)	347, 499
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	58, 283, 445
Csp6I	GTAC	2 cut(s)	326, 543
CviAII	CATG	3 cut(s)	287, 329, 548
CviQI	GTAC	2 cut(s)	326, 543
DdeI	CTNAG	3 cut(s)	147, 306, 340
DpnI	GATC	3 cut(s)	68, 240, 280
DpnII	GATC	3 cut(s)	66, 238, 278
EaeI	YGGCCR	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	621
Eco147I	AGGCCT	1 cut(s)	345
Eco24I	GRGCYC	3 cut(s)	40, 103, 623
Eco47I	GGWCC	2 cut(s)	58, 445
Eco53kI	GAGCTC	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	3 cut(s)	40, 103, 623
FaeI	CATG	3 cut(s)	290, 332, 551
FaiI	YATR	9 cut(s)	137, 216, 288, 330, 366, 423, 425, 549, 625
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	3 cut(s)	286, 328, 547
FauI	CCCGC	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	144, 350
FriOI	GRGCYC	3 cut(s)	40, 103, 623
Fsp4HI	GCNGC	2 cut(s)	144, 350
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	144, 350
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	285, 345, 472
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	290, 332, 551
HinfI	GANTC	4 cut(s)	4, 50, 218, 505
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	251, 263
Hpy188I	TCNGA	2 cut(s)	278, 611
Hpy188III	TCNNGA	4 cut(s)	380, 401, 452, 548
Hpy8I	GTNNAC	2 cut(s)	251, 263
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	181, 251, 458, 576
HpyCH4III	ACNGT	2 cut(s)	126, 468
HpyCH4V	TGCA	9 cut(s)	17, 80, 110, 263, 349, 371, 458, 519, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	147, 306, 340
Hsp92II	CATG	3 cut(s)	290, 332, 551
Kzo9I	GATC	3 cut(s)	66, 238, 278
LmnI	GCTCC	5 cut(s)	35, 98, 303, 585, 618
Lsp1109I	GCAGC	2 cut(s)	130, 361
LweI	GCATC	2 cut(s)	358, 445
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	68, 240, 280
MboI	GATC	3 cut(s)	66, 238, 278
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	4 cut(s)	40, 103, 265, 623
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	8 cut(s)	27, 90, 163, 356, 383, 389, 405, 605
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	4, 67
MnlI	CCTC	7 cut(s)	303, 532, 544, 592, 595, 605, 609
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	2 cut(s)	435, 655
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	472
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	62, 269
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	3 cut(s)	66, 238, 278
NlaIII	CATG	3 cut(s)	290, 332, 551
NlaIV	GGNNCC	2 cut(s)	37, 100
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	345
PciI	ACATGT	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	4, 50, 505
PkrI	GCNGC	2 cut(s)	145, 351
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	37, 100
PspPI	GGNCC	3 cut(s)	58, 283, 445
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	327, 544
RsaNI	GTAC	2 cut(s)	326, 543
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	435, 655
SatI	GCNGC	2 cut(s)	144, 350
Sau3AI	GATC	3 cut(s)	66, 238, 278
Sau96I	GGNCC	3 cut(s)	58, 283, 445
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	62, 269
SduI	GDGCHC	4 cut(s)	40, 103, 265, 623
SfaNI	GCATC	2 cut(s)	358, 445
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	58, 445
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	8 cut(s)	27, 90, 163, 356, 383, 389, 405, 605
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	501, 635
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	623
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	60, 267
TaaI	ACNGT	2 cut(s)	126, 468
TaqI	TCGA	1 cut(s)	221
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	8 cut(s)	27, 90, 163, 356, 383, 389, 405, 605
TfiI	GAWTC	3 cut(s)	4, 50, 505
Tru1I	TTAA	2 cut(s)	435, 655
Tru9I	TTAA	2 cut(s)	435, 655
TscAI	CASTG	4 cut(s)	129, 310, 473, 534
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	143, 349
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	2 cut(s)	17, 365
TspRI	CASTG	4 cut(s)	129, 310, 473, 534
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	58, 445
XapI	RAATTY	2 cut(s)	356, 605
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.