Rmu_sc0020641.1_g000001

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020641.1
OG0014837
Physical Location & Seq
Reverse (-)
1 .. 963
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020641.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
atgaatattaagaaagatctgtgggtgcagcaagacggaaataaggtcgattttcctcatgcagaatatgtatttacaccgtctcaacgtacatttatatgtgaattcctcaagtcagttagatttccagatggttatgcggcaaatatatcacgcaatgtgaatttagatgaccggaagatatcgggtttaaagagtcacgattgtcatgtgctattgcaacgagttcttcctgttggaatacgaaaacatttgaagaaaaagatttatgctccacttgtagaactatcatatttgttccagcagatatgcgcaaagacactcaaaattgcagatctggagaggtgggaggtggagattgtactgatattgtgcaaactagaaaaaattttccctccagcattctttgacattatggttcatttagccgtgcacttgccacgcgaagctaaacttgctggcccagtgggataccgttggatgtatccaattgagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4218 Transpos_assoc Transposase_21

Protein Analysis

165

Amino Acids

19.23

Weight (kDa)

9.16

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 313
AccII CGCG 1 cut(s) 444
AciI CCGC 1 cut(s) 140
AcsI RAATTY 3 cut(s) 104, 163, 387
AfaI GTAC 2 cut(s) 91, 363
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 431
AoxI GGCC 1 cut(s) 460
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 104, 163, 387
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 413
BciVI GTATCC 2 cut(s) 464, 495
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 380
BfuI GTATCC 2 cut(s) 464, 495
BglII AGATCT 2 cut(s) 16, 334
BisI GCNGC 2 cut(s) 29, 141
BlsI GCNGC 2 cut(s) 30, 142
BmgT120I GGNCC 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 458
BpmI CTGGAG 2 cut(s) 359, 381
BpuEI CTTGAG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 163
BseGI GGATG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 16, 334
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 462
BspFNI CGCG 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 464
BssMI GATC 2 cut(s) 16, 334
Bst4CI ACNGT 2 cut(s) 81, 476
BstC8I GCNNGC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 19, 337
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 16, 334
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 16, 334
BstYI RGATCY 2 cut(s) 16, 334
BsuI GTATCC 2 cut(s) 464, 495
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 460
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 90, 362
CviAII CATG 2 cut(s) 59, 209
CviJI RGCY 3 cut(s) 428, 449, 462
CviKI_1 RGCY 3 cut(s) 428, 449, 462
CviQI GTAC 2 cut(s) 90, 362
DpnI GATC 2 cut(s) 18, 336
DpnII GATC 2 cut(s) 16, 334
DraI TTTAAA 1 cut(s) 192
Eco32I GATATC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 62, 212
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 2 cut(s) 58, 208
Fnu4HI GCNGC 2 cut(s) 29, 141
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 2 cut(s) 29, 141
FspBI CTAG 1 cut(s) 380
FspI TGCGCA 1 cut(s) 313
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 29, 141
GsuI CTGGAG 2 cut(s) 359, 381
HaeIII GGCC 1 cut(s) 462
HapII CCGG 1 cut(s) 175
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 62, 212
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 433
Hpy188III TCNNGA 3 cut(s) 128, 200, 338
Hpy8I GTNNAC 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 81, 476
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 6 cut(s) 28, 62, 220, 332, 375, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 2 cut(s) 62, 212
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 16, 334
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 8 cut(s) 141, 188, 246, 314, 323, 411, 444, 477
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 18, 336
MboI GATC 2 cut(s) 16, 334
MboII GAAGA 3 cut(s) 190, 221, 268
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 16, 334
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 5 cut(s) 104, 163, 327, 387, 489
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 2 cut(s) 217, 458
MnlI CCTC 5 cut(s) 66, 119, 336, 343, 405
MseI TTAA 2 cut(s) 9, 191
MslI CAYNNNNRTG 1 cut(s) 97
MspI CCGG 1 cut(s) 175
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 401
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 2 cut(s) 16, 334
NlaIII CATG 2 cut(s) 62, 212
NmuCI GTSAC 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 313
PctI GAATGC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 30, 142
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 2 cut(s) 16, 334
RsaI GTAC 2 cut(s) 91, 363
RsaNI GTAC 2 cut(s) 90, 362
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 2 cut(s) 9, 191
SatI GCNGC 2 cut(s) 29, 141
Sau3AI GATC 2 cut(s) 16, 334
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 435
SetI ASST 5 cut(s) 48, 91, 347, 354, 451
SmiMI CAYNNNNRTG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 5 cut(s) 104, 163, 327, 387, 489
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 380
TaaI ACNGT 2 cut(s) 81, 476
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 48
TasI AATT 5 cut(s) 104, 163, 327, 387, 489
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 9, 191
Tru9I TTAA 2 cut(s) 9, 191
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 17, 410
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 471
VneI GTGCAC 1 cut(s) 431
XapI RAATTY 3 cut(s) 104, 163, 387
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.