Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

67127833 .. 67128964

Gene Structure 1132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATGAAGGGTATATCTCATTTTGGTGGTTGGACCTGGAGATAAAGCTAGTTGCAGATGTTGGAATTGTGGGAGCCCCAAATGCAGGGAAAAGCACACTGTTGAGTGTTATAAGTGCTGCTCAGCCAACAATAGCAAATTACCCCTTCACTACTTTACTTCCAAATCTGGGTGTTGTTTCTTTTGACTATGACTCGACGATGGTTGTAGCAGATCTACCGGGTTTACTTGAAGGTGCACACTGGGGTTTCGGATCACGCCATGAGTTTCTGCGCCACACTGAGAGGTGTTCTGTCTTGGTACATGTTGATGGCTCAGGCATGCAGCCAGAATTTGAGTATGATGCAGTTCGTCTGGAATTGGAATTGTTTAGTCCTGAAATTGCTGAAAAGCCTTATATAGTCGCTTTTAACAAAATGGACCTTCCAGATGCAAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

148

Amino Acids

16.26

Weight (kDa)

4.48

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	20 - 139	1.7e-21	50S ribosome-binding GTPase
FeoB_N	PF02421	21 - 108	4.1e-09	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	86, 170
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	241
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	262
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	119, 325
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	34, 421
AsuC2I	CCSGG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	34, 421
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	106, 337
BccI	CCATC	2 cut(s)	196, 305
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	120, 326
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	121, 327
Bme1390I	CCNGG	2 cut(s)	38, 222
Bme18I	GGWCC	2 cut(s)	34, 421
BmgT120I	GGNCC	2 cut(s)	34, 421
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	38, 222
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	334, 421
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 170
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	86, 170
BseMII	CTCAG	3 cut(s)	137, 273, 330
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	106, 337
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	86, 170
Bsp1286I	GDGCHC	2 cut(s)	79, 241
Bsp143I	GATC	2 cut(s)	214, 254
Bsp1720I	GCTNAGC	1 cut(s)	123
BspCNI	CTCAG	3 cut(s)	136, 274, 329
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	214, 254
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	123, 282, 316
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	217, 257
BstMBI	GATC	2 cut(s)	214, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	308, 325
BstSCI	CCNGG	2 cut(s)	36, 220
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	106, 337
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	98, 241, 279
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	34, 421
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	3 cut(s)	263, 305, 322
CviJI	RGCY	6 cut(s)	49, 77, 127, 315, 328, 394
CviKI_1	RGCY	6 cut(s)	49, 77, 127, 315, 328, 394
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	123, 282, 316
DpnI	GATC	2 cut(s)	216, 256
DpnII	GATC	2 cut(s)	214, 254
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	34, 421
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	266, 308, 325
FaiI	YATR	9 cut(s)	15, 113, 192, 264, 306, 323, 342, 399, 401
FatI	CATG	3 cut(s)	262, 304, 321
Fnu4HI	GCNGC	2 cut(s)	120, 326
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	120, 326
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	120, 326
GsuI	CTGGAG	1 cut(s)	59
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	266, 308, 325
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	227, 239
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	356, 377, 428
Hpy8I	GTNNAC	2 cut(s)	227, 239
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	157, 227, 434
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	6 cut(s)	56, 86, 239, 325, 347, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	123, 282, 316
Hsp92II	CATG	3 cut(s)	266, 308, 325
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	214, 254
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	106, 337
LweI	GCATC	2 cut(s)	334, 421
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	216, 256
MboI	GATC	2 cut(s)	214, 254
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	79, 241
MluCI	AATT	6 cut(s)	66, 139, 332, 359, 365, 381
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	12, 43
MnlI	CCTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	25, 309
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	38, 222
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	214, 254
NlaIII	CATG	3 cut(s)	266, 308, 325
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	2 cut(s)	308, 325
PaeI	GCATGC	1 cut(s)	325
PciI	ACATGT	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	121, 327
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	34, 421
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	25, 309
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	120, 326
Sau3AI	GATC	2 cut(s)	214, 254
Sau96I	GGNCC	2 cut(s)	34, 421
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	38, 222
SduI	GDGCHC	2 cut(s)	79, 241
SetI	ASST	5 cut(s)	39, 51, 238, 290, 426
SfaNI	GCATC	2 cut(s)	334, 421
SinI	GGWCC	2 cut(s)	34, 421
SmiMI	CAYNNNNRTG	2 cut(s)	25, 309
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	6 cut(s)	66, 139, 332, 359, 365, 381
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	36, 220
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	66, 139, 332, 359, 365, 381
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	105, 248, 286
TseI	GCWGC	2 cut(s)	119, 325
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	105, 248, 286
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	34, 421
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	308, 325
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.