Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002500.1

Orthogroup ID

OG0014837

Physical Location & Seq

Genomic Coordinates Forward (+)

11474 .. 12034

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002500.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggatattgatggtaaaacaaaggatggtttaaatgctcgtcttgatatgcaagaaatgggtataaggccaaacttacaccctagagaagaagatggaaaagtagtttatgatgcagctccttatacattatcagttgaagacattaaagccttatgtcagtggttgttaaaacttaaagtcccagatggatactcttccaatatatctcggtgtgtgactgcatcaggccgtagtatttttgggttgaaaactcatgattgtcatgtttttttagagacattgcttccgcttgcggcaagagagttattgcctaaagatccacgagaggctataatcgagctttgtaactttttaaaagagttatgtgctaaagtattgagggcagaggatttggaacttcttgagaaaagtgttttcataactctttgcaagttggaaaaagtattcccaccagcattttttgatatcatggttcatttactgatccacttggcttgggaggcaaaactcgcaggtccagtacaatataggtggatgtatcccatagaaaggtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4218

Protein Analysis

186

Amino Acids

21.3

Weight (kDa)

5.97

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014837)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g14990 pycom16g04840
rosa_laevigata	RLG00000015505 RLG00000015509
rosa_multiflora	Rmu_co8359351.1_g000001 Rmu_sc0002500.1_g000004 Rmu_sc0004178.1_g000006 Rmu_sc0020641.1_g000001 Rmu_ssc0000144.1_g000008
rosa_roxburghii	Rroxscaffold_2G00116500
rosa_samantha	Rh1AG103200 Rh2AG206200 Rh4DG231600 Rh6BG154700 Rh6DG139900
rosa_wichuraiana	Rw1G014030 Rw2G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	506
AciI	CCGC	2 cut(s)	290, 296
AclWI	GGATC	2 cut(s)	314, 481
AfaI	GTAC	2 cut(s)	525, 557
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	140, 250
AluBI	AGCT	2 cut(s)	119, 343
AluI	AGCT	2 cut(s)	119, 343
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	2 cut(s)	314, 481
AoxI	GGCC	2 cut(s)	68, 229
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	4 cut(s)	5, 20, 89, 182
BceAI	ACGGC	1 cut(s)	216
BciVI	GTATCC	2 cut(s)	185, 552
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	506
BfuI	GTATCC	2 cut(s)	185, 552
BisI	GCNGC	2 cut(s)	117, 297
BlsI	GCNGC	2 cut(s)	118, 298
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmsI	GCATC	2 cut(s)	103, 233
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	31, 543
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	2 cut(s)	70, 231
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	70, 231
Bsp143I	GATC	2 cut(s)	319, 486
BspACI	CCGC	2 cut(s)	290, 296
BspANI	GGCC	2 cut(s)	70, 231
BspHI	TCATGA	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	314, 481
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	521
BssMI	GATC	2 cut(s)	319, 486
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	31, 543
BstKTI	GATC	2 cut(s)	322, 489
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	319, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 512
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuI	GTATCC	2 cut(s)	185, 552
BsuRI	GGCC	2 cut(s)	70, 231
BtsCI	GGATG	2 cut(s)	31, 543
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	524, 556
CspCI	CAANNNNNGTGG	4 cut(s)	479, 514, 515, 550
CviAII	CATG	3 cut(s)	257, 266, 472
CviJI	RGCY	7 cut(s)	70, 119, 152, 231, 332, 343, 497
CviKI_1	RGCY	7 cut(s)	70, 119, 152, 231, 332, 343, 497
CviQI	GTAC	2 cut(s)	524, 556
DpnI	GATC	2 cut(s)	321, 488
DpnII	GATC	2 cut(s)	319, 486
DraI	TTTAAA	2 cut(s)	33, 357
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	518
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	3 cut(s)	260, 269, 475
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	256, 265, 471
Fnu4HI	GCNGC	2 cut(s)	117, 297
FokI	GGATG	2 cut(s)	38, 550
Fsp4HI	GCNGC	2 cut(s)	117, 297
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	117, 297
HaeIII	GGCC	2 cut(s)	70, 231
Hin1II	CATG	3 cut(s)	260, 269, 475
Hpy188III	TCNNGA	3 cut(s)	44, 257, 404
HpyCH4V	TGCA	4 cut(s)	52, 116, 224, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 512
Hsp92II	CATG	3 cut(s)	260, 269, 475
Kzo9I	GATC	2 cut(s)	319, 486
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	198, 213, 468, 501, 534
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	103, 233
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	217, 347
MalI	GATC	2 cut(s)	321, 488
MboI	GATC	2 cut(s)	319, 486
MboII	GAAGA	4 cut(s)	101, 104, 152, 189
MflI	RGATCY	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	4 cut(s)	322, 375, 382, 496
MseI	TTAA	5 cut(s)	32, 147, 170, 177, 356
MwoI	GCNNNNNNNGC	2 cut(s)	503, 512
NdeII	GATC	2 cut(s)	319, 486
NlaIII	CATG	3 cut(s)	260, 269, 475
NmuCI	GTSAC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	118, 298
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	525, 557
RsaNI	GTAC	2 cut(s)	524, 556
SaqAI	TTAA	5 cut(s)	32, 147, 170, 177, 356
SatI	GCNGC	2 cut(s)	117, 297
Sau3AI	GATC	2 cut(s)	319, 486
Sau96I	GGNCC	1 cut(s)	518
SetI	ASST	5 cut(s)	121, 345, 520, 536, 557
SfaNI	GCATC	2 cut(s)	103, 233
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	2 cut(s)	290, 296
SspMI	CTAG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	339
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	299
Tru1I	TTAA	5 cut(s)	32, 147, 170, 177, 356
Tru9I	TTAA	5 cut(s)	32, 147, 170, 177, 356
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	409, 467
TspRI	CASTG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	518
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.