Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

15891668 .. 15901415

Gene Structure 9748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4452 bp

ATGAAAATTGGTCATACGATATATAATGAACGACCACGATTAAATAATTCCCGAATCTCAAAAAAATTTCGGAGAACATTCTTGTCCTTTACCAATCACAAAAAAGAAGGAAAGTCAAAATTGTGGTCTCCACTCCTAAATTCAAAGGACCATGTGAATGCGATACTTGCATTAAAATACAGGTGCCGTCGTTTTCTTTCTTTCTTTTTCATTGTTATTGCAATGGTTGTTGGCTGGGTTCCTCTCGCTTTGCTCACAGAAATGGCCAACGAAAGAGACGCAGCGGCAGGAAGCGGTGGCAGCCTAGTTTTTGCAGTTAACGGAGAGAGGTTTGAGCTCCCGACCGTTGATCCTTCAACCACTCTGCTCGCCTTCTTGCGTTCTCAGACGAGATTCAAAAGTGTCAAGCTCAGCTGCGGTGAAGGTGGTTGCGGTGCTTGTGTTGTGCTACTGTCCAAGTACGACCCTATTGTCGACGAAGTGAAAGATTTTACTGCAAGTTCATGTCTCACTCTGCTTTGCAGTATAAATGGATGTTCAATTACAACATCCGAAGGCCTTGGAAATATCAAAGACGGGTTCCACCCAATTCACCAAAGGATTGCTGGTTTCCATGCTTCTCAATGCGGCTTTTGTACTCCTGGCATGTGTGTTTCACTCTTTGGAGCTCTTGTCAATGCTGAAAAGGCGAATAGACCTGATCCCCCTCCTGGGTTCTCCAAGCTTTCTGTTTCCGAAGCTGAAAAGTCTATTGCAGGTAACCTCTGTCGATGTACTGGGTATCGACCAATTGTTGATGCCTGCAAGAGTTTCGCATCTGATGTTGACATGGAGGATTTGGGGTTCAACTCCTTTTGGAAAAAGGGAGATAGTAAGGAAGTAAAAGTAAAGAGTTTACCTCTATATAACCGTCATGGTGACATCTGTACATTTCCGGACTTCTTAAAAAAAGAAATTTGTTCTTCCATGTCTTTGGATCCTACGAGATATGGTTGGTACAATCCTCTTAGAGTTGAGGAGCTTCAAAACTTATTGAAAGATAATGATTTTGATAATGCAAACGAGATGAAATTAGTTGTTGGAAACACAGGGACGGGCTATTACAAGGAGCTAAAGCGCTATGACAGATACATTGATCTCAGATGTGTTCCTGAATTATCAATGGTTAAGAAGGACCCTGTGGGGGTTGAGTTCGGAGCAACTGTAACAATCTCTAAAGTTATTGAGTCTTTGAAGAAGAAAGACAACGGTGGATCTCCATCAAGAGGTGGTGATGTGTCAAAAAAAATTGCCAATCATATGGAGAAAATTGCTTCAGGGTTCATCAGAAATACAGGTAGTATAGGAGGGAATTTGGTGATGGCACAGAGAAAATGTTTTCCTTCAGATATTGCTACAATACTTCTTGCTGTGGATTCAGAAGTAGATATAATGAATGGTGTTAGATCTGAAACGGTTATGTTAGAGGATTTTCTGAAAAGGCCTCCACTGGATCCGAAAAGTGTACTTTTAAGTGTTAAAATCCCAAATTGGGAAGCAGTTAGAAAAGTTTCTCCAGAAACTGACACCATGTTGCTTTTTGAAACCTATCGAGCTGCACCAAGACCCCTAGGAAGGGCATTAGCTTATTTAAATGCTGCCTTCCTAGCAGAGGTTTCGTTTGGTAAGATTTCCAATGGAATTATGGTGGATCGTTGTCGTCTGGCTTTTGGTGCTTATGGAACTAAACATGCAATTAGAGCAAGAAAGATCGAGGAATTTTTAACTGGAAAAGTGCTGAGTCCTGGTGTTCTATATGACGCTATTAAATTAGTTAGGGATGTTGTGGTTCCTGAAGAAGGAACTACGAGCCCTGCTTACAGGTCAAGCTTGGCTGCCAGTTTTCTTTTCGAGTTCTTTAGCCCCTTAATTGACAGTGAAAGTTGCAAAGGATTCTTGGGAAATACTTTGTTGGCCGATGCTTCCAAGTTAAAAAGGAACAAAAGTGCTAGCGATAAGATGAGAACTGTTCTGTCATCTGGTAAACAGGTGATTGAATTAAGTACAGAGTATGATCCGGTTGGTAAACCAATTACAAAATCTGGAGGTCTCATACAAGCTTCAGGTGAGGCAGTCTATGTAGACGACATTCCATCTCCGAAAAATTGCTTACATGGAGCGTTCATTTATAGTACAAAGCCTTTGGCTAGAGTGAAGGGAATAAAACTTGAACCTAAATCACATCCAGGAGTTACTGCACTGATATCTTTCAAAGATGTTCCCAAGTCTGGGGAGAACATAGGGTCCAAGACTTTTCTTGGTACAGAACCTCTGTTTGCTAATGATCTTACAGAATGGGCTGGTCAGCGTCTTGCTTTCGTGGTAGCAGATACGCAGAAACATGCAGATATGGCTACAAACTTTGCGGTGGTTGATTATAACATGGAAGATGTAGATCCACCTATCTTATCAGTCGAAGAGGCAGTTAAGAGAGCAAGTTTTTTTGAGGTCCCTCCTTTCTTGTATCCGAAACAGGTCGGTGACATATCAAATGGAATGGCTGCAGCTGATCACAAGATTATTTCTGCTGAGATCAAACTTGGTTCACAATACTATTTCTACATGGAGACACAAACAGCCCTTGCTGTACCAGATGAAGACAACTGCATGGTGGTTTACACTTCAAGTCAAGTGCCTGAGTATGCACACTCTACAATTGCAAAATGTCTTGGTATTCCTGAAAATAATATTCGTGTAATTACAAGAAGGGTCGGAGGGGGCTTCGGTGGAAAGGCCATGCAATCAATGCCTGTCGCAACTGCATGTGCTCTTGCAGCACACAAATTACATAGACCTGTACGGATATATCTCAATCGCAAGACTGATATGATAATGGCTGGAGGAAGGCATCCCATGAAGATAACTTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTAGAACTTGAGATATTGATAAATGCAGGGATTTCCATAGACTTTAGTCCATTATTGCCAAAAAGTATTGTGACTGCGCTTAAGAAGTATGACTGGGGTGCTCTGGCTTTCGATATCAAGGTGTGCAAAACAAACACTCCAAGTAGGTCTGCTATGCGGGCCCCTGGGGAGGTGCAGGGGTCATTTATCGCTGAAGCTGTAATTGAACATGTAGCATCCATCCTTTCTATAGAAGTAGATTCTGTGAGAAGCGTTAATCTTCACACATCTCACAGCCTTGATTTGTTTTACGAGCAGAGCGCTGGTGAACCCCTGGAGTATACTTTACCATTGATATGGAACAAGTTGTCCATGTCTTCAAGCTTTAACCCAAGGACTGAGATTGTAAAAGAATTTAATAGGTGTAATAAATGGCAGAAAAGAGGAATTTCTCGAGTACCGATATTGTATGAAGTGTCATTGAGGCCAACTCCGGGAAAAGTAGGCATTTTAAGTGATGGGTCTGTTGTTGTTGAAGTTGGAGGAATTGAACTGGGTCAGGGGCTCTGGACGAAGGTAAAACAGGTGACAGCTTTTGCTCTTGGTTCGATTCAATGTGATGGTAGTGGAGATTTCTTGGATAAAATACGGGTGGTGCAATCAGATACATTGAGCTTAATTCAAGGGGGAATGACTGCTGGGAGCACTACATCTGAGACAAGCTGTGAGGCAGTTAGACTTTGCTGTAATATTTTGGTTGAGAGGTTAGCTACTCTCAAGGGGAGATTGAAGGAGCAAATGGGCTCTATTAACTGGGAGACTCTTATTCAGCAGGCATCCTTGCAAGATGTGAACTTATCAGCAAGTTCTTATTATGTCCCTGATTCTGCTTCCAGGGCATACCTTAACTATGGTGCTGCTGTGAGTGAGGTGGAGGTAAACGTTCTGACTGGACAAACCACAATTCTGCGATCGGATATTATCTACGATTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATCGAAGGTTCTTTTGTTCAGGGTATTGGGTTTTTCATGCTTGAAGAGTACTCGGAAAACTCTGATGGGTTGGTGATTTCAGAAGGTACATGGACATATAAGATTCCTACGGTGGACACCATACCCAAACAGTTCAATGTTGAAGTATTGAACAGTGGGCATCATAAAAAACACGTGCTCTCTTCAAAAGCTTCTGGTGAGCCACCATTACTTCTTGCGGTTTCTGTTCACTGCGCTACAAGGGCTGCCATTAAAGAATCAAGAAAACAGCTTCTTCAGTGGGGCGGCCTAGATGGATCGGCATCAATATTCCAGTTAGATGTTCCTGCTACCATGCCTGTTGTGAAGGAGCTGTGTGGACTGGAAGCTGTGGAGAGGTACTTGGAATGGATTGTAGACCAAGGTTCATTCGACCGGAGAATGGTTCGTAATCTCGGAGATTGGGTTGTTTTCTGTCTATATTTATATTTGAGGAAAATTCTATGCAGTGAGAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1484

Amino Acids

162.56

Weight (kDa)

8.34

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	105 - 171	1.1e-07	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	183 - 269	1.8e-21	[2Fe-2S] binding domain
FAD_binding_5	PF00941	329 - 511	1.8e-38	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	529 - 634	2.3e-19	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	701 - 808	6.7e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	837 - 1068	5.9e-83	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1099 - 1359	8.1e-71	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2418
AasI	GACNNNNNNGTC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	4 cut(s)	474, 2121, 3263, 4347
AccIII	TCCGGA	1 cut(s)	934
AciI	CCGC	9 cut(s)	284, 294, 417, 432, 627, 2405, 3100, 4169, 4236
AclI	AACGTT	1 cut(s)	3864
AcoI	YGGCCR	2 cut(s)	264, 1953
AcsI	RAATTY	8 cut(s)	65, 139, 954, 1351, 1757, 3335, 3369, 4428
AcuI	CTGAAG	6 cut(s)	1299, 1368, 1854, 2085, 3156, 4211
AcvI	CACGTG	1 cut(s)	4126
AfeI	AGCGCT	2 cut(s)	1118, 3244
AflII	CTTAAG	1 cut(s)	3023
AflIII	ACRYGT	2 cut(s)	3151, 4123
AjnI	CCWGG	7 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3815
AloI	GAACNNNNNNTCC	6 cut(s)	827, 859, 2267, 2299, 3275, 3307
Alw21I	GWGCWC	6 cut(s)	339, 670, 2809, 3046, 3629, 4131
Alw26I	GTCTC	8 cut(s)	132, 270, 512, 2093, 2600, 3632, 3734, 3929
AlwNI	CAGNNNCTG	1 cut(s)	1562
Ama87I	CYCGRG	1 cut(s)	3375
Aor13HI	TCCGGA	1 cut(s)	934
Aor51HI	AGCGCT	2 cut(s)	1118, 3244
AoxI	GGCC	8 cut(s)	264, 556, 1481, 1953, 2772, 3102, 3407, 4237
ApaI	GGGCCC	1 cut(s)	3106
ApoI	RAATTY	8 cut(s)	65, 139, 954, 1351, 1757, 3335, 3369, 4428
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	1549
AspA2I	CCTAGG	1 cut(s)	1609
AspLEI	GCGC	4 cut(s)	1119, 3022, 3245, 4187
AspS9I	GGNCC	6 cut(s)	148, 1174, 2283, 2488, 3102, 3103
AsuC2I	CCSGG	1 cut(s)	3417
AsuNHI	GCTAGC	1 cut(s)	1988
AvaI	CYCGRG	1 cut(s)	3375
AvaII	GGWCC	4 cut(s)	148, 1174, 2283, 2488
AvrII	CCTAGG	1 cut(s)	1609
BaeGI	GKGCMC	1 cut(s)	3106
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	2 cut(s)	976, 1492
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	6 cut(s)	339, 670, 1853, 3106, 3489, 3728
BarI	GAAGNNNNNNTAC	2 cut(s)	2888, 2920
BbrPI	CACGTG	1 cut(s)	4126
BbsI	GAAGAC	2 cut(s)	2643, 3291
Bbv12I	GWGCWC	6 cut(s)	339, 670, 2809, 3046, 3629, 4131
BccI	CCATC	9 cut(s)	1267, 1354, 2140, 2921, 3170, 3434, 3536, 4010, 4238
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	4 cut(s)	793, 827, 1638, 1672
BciT130I	CCWGG	7 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3817
BciVI	GTATCC	1 cut(s)	2514
BclI	TGATCA	1 cut(s)	2548
BcnI	CCSGG	1 cut(s)	3417
BcoDI	GTCTC	8 cut(s)	132, 270, 512, 2093, 2600, 3632, 3734, 3929
BfaI	CTAG	6 cut(s)	305, 1610, 1646, 1989, 2187, 4241
BfmI	CTRYAG	2 cut(s)	2541, 3171
BfoI	RGCGCY	2 cut(s)	1120, 3246
BfrI	CTTAAG	1 cut(s)	3023
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	2514
BglII	AGATCT	1 cut(s)	1445
BlnI	CCTAGG	1 cut(s)	1609
BlpI	GCTNAGC	1 cut(s)	410
BmcAI	AGTACT	1 cut(s)	4001
Bme1390I	CCNGG	8 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3417, 3817
Bme18I	GGWCC	4 cut(s)	148, 1174, 2283, 2488
BmeT110I	CYCGRG	1 cut(s)	3375
BmgT120I	GGNCC	6 cut(s)	148, 1174, 2283, 2488, 3102, 3103
BmrFI	CCNGG	8 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3417, 3817
BmrI	ACTGGG	4 cut(s)	786, 3046, 3485, 3745
BmsI	GCATC	8 cut(s)	787, 824, 1948, 2896, 3167, 3767, 4120, 4262
BmtI	GCTAGC	1 cut(s)	1992
BmuI	ACTGGG	4 cut(s)	786, 3046, 3485, 3745
BoxI	GACNNNNGTC	1 cut(s)	2988
BpiI	GAAGAC	2 cut(s)	2643, 3291
BplI	GAGNNNNNCTC	4 cut(s)	883, 915, 3397, 3429
BpmI	CTGGAG	4 cut(s)	1539, 2103, 2898, 3278
Bpu1102I	GCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	2972, 3683
BpuMI	CCSGG	1 cut(s)	3417
BsaAI	YACGTR	1 cut(s)	4126
BsaBI	GATNNNNATC	3 cut(s)	1258, 2433, 4252
BsaI	GGTCTC	2 cut(s)	132, 2093
BsaJI	CCNNGG	9 cut(s)	559, 710, 1609, 3106, 3107, 3255, 3314, 3816, 4351
BsaWI	WCCGGW	3 cut(s)	934, 2056, 4365
BsaXI	ACNNNNNCTCC	8 cut(s)	657, 687, 1188, 1218, 3064, 3094, 4380, 4410
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	3 cut(s)	1258, 2433, 4252
BseAI	TCCGGA	1 cut(s)	934
BseBI	CCWGG	7 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3817
BseDI	CCNNGG	9 cut(s)	559, 710, 1609, 3106, 3107, 3255, 3314, 3816, 4351
BseGI	GGATG	8 cut(s)	539, 548, 1825, 2221, 2887, 3158, 3162, 3758
BseJI	GATNNNNATC	3 cut(s)	1258, 2433, 4252
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	8 cut(s)	398, 424, 1153, 1769, 2559, 2667, 3312, 3627
BseRI	GAGGAG	1 cut(s)	1031
BseSI	GKGCMC	1 cut(s)	3106
BseYI	CCCAGC	2 cut(s)	234, 3620
BsgI	GTGCAG	3 cut(s)	1581, 2220, 3137
Bsh1285I	CGRYCG	3 cut(s)	345, 3896, 4366
BshFI	GGCC	8 cut(s)	266, 558, 1483, 1955, 2774, 3104, 3409, 4239
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	3 cut(s)	345, 3896, 4366
BsiHKAI	GWGCWC	6 cut(s)	339, 670, 2809, 3046, 3629, 4131
BsiHKCI	CYCGRG	1 cut(s)	3375
BsiSI	CCGG	4 cut(s)	935, 2057, 3416, 4366
BslFI	GGGAC	3 cut(s)	1105, 2474, 3785
BsmAI	GTCTC	8 cut(s)	132, 270, 512, 2093, 2600, 3632, 3734, 3929
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	3 cut(s)	1105, 2474, 3785
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	8 cut(s)	266, 558, 1483, 1955, 2774, 3104, 3409, 4239
Bso31I	GGTCTC	2 cut(s)	132, 2093
BsoBI	CYCGRG	1 cut(s)	3375
Bsp120I	GGGCCC	1 cut(s)	3102
Bsp13I	TCCGGA	1 cut(s)	934
Bsp1407I	TGTACA	1 cut(s)	926
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	9 cut(s)	284, 294, 417, 432, 627, 2405, 3100, 4169, 4236
BspANI	GGCC	8 cut(s)	266, 558, 1483, 1955, 2774, 3104, 3409, 4239
BspCNI	CTCAG	8 cut(s)	397, 423, 1152, 1770, 2560, 2668, 3313, 3628
BspEI	TCCGGA	1 cut(s)	934
BspMAI	CTGCAG	1 cut(s)	2545
BspMI	ACCTGC	1 cut(s)	746
BspOI	GCTAGC	1 cut(s)	1992
BspT107I	GGYRCC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	3023
BspTNI	GGTCTC	2 cut(s)	132, 2093
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	926
BssECI	CCNNGG	9 cut(s)	559, 710, 1609, 3106, 3107, 3255, 3314, 3816, 4351
BssNAI	GTATAC	1 cut(s)	3264
BssT1I	CCWWGG	4 cut(s)	559, 1609, 3314, 4351
Bst1107I	GTATAC	1 cut(s)	3264
Bst2UI	CCWGG	7 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3817
Bst6I	CTCTTC	3 cut(s)	2451, 3990, 4138
BstAFI	CTTAAG	1 cut(s)	3023
BstAPI	GCANNNNNTGC	1 cut(s)	2785
BstAUI	TGTACA	1 cut(s)	926
BstBAI	YACGTR	1 cut(s)	4126
BstC8I	GCNNGC	5 cut(s)	369, 802, 1990, 3102, 3756
BstDEI	CTNAG	9 cut(s)	384, 410, 1007, 1139, 1778, 2568, 2676, 3321, 3636
BstEII	GGTNACC	1 cut(s)	758
BstENI	CCTNNNNNAGG	2 cut(s)	1649, 1836
BstF5I	GGATG	8 cut(s)	539, 548, 1825, 2221, 2887, 3158, 3162, 3758
BstH2I	RGCGCY	2 cut(s)	1120, 3246
BstHHI	GCGC	4 cut(s)	1119, 3022, 3245, 4187
BstMAI	GTCTC	8 cut(s)	132, 270, 512, 2093, 2600, 3632, 3734, 3929
BstMCI	CGRYCG	3 cut(s)	345, 3896, 4366
BstNI	CCWGG	7 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3817
BstNSI	RCATGY	5 cut(s)	649, 1733, 2384, 2805, 3155
BstPAI	GACNNNNGTC	1 cut(s)	2988
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	8 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3415, 3815
BstSFI	CTRYAG	2 cut(s)	2541, 3171
BstSLI	GKGCMC	1 cut(s)	3106
BstV2I	GAAGAC	2 cut(s)	2643, 3291
BstX2I	RGATCY	5 cut(s)	976, 1253, 1445, 1492, 2434
BstXI	CCANNNNNNTGG	3 cut(s)	973, 1300, 3279
BstYI	RGATCY	5 cut(s)	976, 1253, 1445, 1492, 2434
BstZ17I	GTATAC	1 cut(s)	3264
BsuI	GTATCC	1 cut(s)	2514
BsuRI	GGCC	8 cut(s)	266, 558, 1483, 1955, 2774, 3104, 3409, 4239
BtsCI	GGATG	8 cut(s)	539, 548, 1825, 2221, 2887, 3158, 3162, 3758
BtsI	GCAGTG	2 cut(s)	4180, 4444
BtsIMutI	CAGTG	8 cut(s)	1487, 1921, 2237, 2914, 4111, 4180, 4235, 4444
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	5 cut(s)	369, 802, 1990, 3102, 3756
CaiI	CAGNNNCTG	1 cut(s)	1562
CfoI	GCGC	4 cut(s)	1119, 3022, 3245, 4187
Cfr13I	GGNCC	6 cut(s)	148, 1174, 2283, 2488, 3102, 3103
CseI	GACGC	3 cut(s)	287, 1808, 2336
DdeI	CTNAG	9 cut(s)	384, 410, 1007, 1139, 1778, 2568, 2676, 3321, 3636
DraI	TTTAAA	1 cut(s)	1632
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	264, 1953
Eam1104I	CTCTTC	3 cut(s)	2451, 3990, 4138
EarI	CTCTTC	3 cut(s)	2451, 3990, 4138
Ecl136II	GAGCTC	2 cut(s)	337, 668
Eco130I	CCWWGG	4 cut(s)	559, 1609, 3314, 4351
Eco147I	AGGCCT	2 cut(s)	558, 1483
Eco24I	GRGCYC	6 cut(s)	339, 670, 1853, 3106, 3489, 3728
Eco31I	GGTCTC	2 cut(s)	132, 2093
Eco32I	GATATC	2 cut(s)	2244, 3058
Eco47I	GGWCC	4 cut(s)	148, 1174, 2283, 2488
Eco47III	AGCGCT	2 cut(s)	1118, 3244
Eco53kI	GAGCTC	2 cut(s)	337, 668
Eco57I	CTGAAG	6 cut(s)	1299, 1368, 1854, 2085, 3156, 4211
Eco72I	CACGTG	1 cut(s)	4126
Eco88I	CYCGRG	1 cut(s)	3375
Eco91I	GGTNACC	1 cut(s)	758
EcoICRI	GAGCTC	2 cut(s)	337, 668
EcoNI	CCTNNNNNAGG	2 cut(s)	1649, 1836
EcoO109I	RGGNCCY	3 cut(s)	1174, 2488, 3103
EcoO65I	GGTNACC	1 cut(s)	758
EcoRII	CCWGG	7 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3815
EcoRV	GATATC	2 cut(s)	2244, 3058
EcoT14I	CCWWGG	4 cut(s)	559, 1609, 3314, 4351
EcoT38I	GRGCYC	6 cut(s)	339, 670, 1853, 3106, 3489, 3728
ErhI	CCWWGG	4 cut(s)	559, 1609, 3314, 4351
Esp3I	CGTCTC	1 cut(s)	270
FaqI	GGGAC	3 cut(s)	1105, 2474, 3785
FauI	CCCGC	1 cut(s)	3093
FauNDI	CATATG	1 cut(s)	1299
FbaI	TGATCA	1 cut(s)	2548
FblI	GTMKAC	4 cut(s)	474, 2121, 3263, 4347
FokI	GGATG	8 cut(s)	535, 546, 1832, 2208, 2874, 3145, 3149, 3745
FriOI	GRGCYC	6 cut(s)	339, 670, 1853, 3106, 3489, 3728
FspBI	CTAG	6 cut(s)	305, 1610, 1646, 1989, 2187, 4241
GlaI	GCGC	4 cut(s)	1118, 3021, 3244, 4186
GsaI	CCCAGC	2 cut(s)	238, 3624
GsuI	CTGGAG	4 cut(s)	1539, 2103, 2898, 3278
HaeII	RGCGCY	2 cut(s)	1120, 3246
HaeIII	GGCC	8 cut(s)	266, 558, 1483, 1955, 2774, 3104, 3409, 4239
HapII	CCGG	4 cut(s)	935, 2057, 3416, 4366
HgaI	GACGC	3 cut(s)	287, 1808, 2336
HhaI	GCGC	4 cut(s)	1119, 3022, 3245, 4187
Hin6I	GCGC	4 cut(s)	1117, 3020, 3243, 4185
HinP1I	GCGC	4 cut(s)	1117, 3020, 3243, 4185
HincII	GTYRAC	3 cut(s)	319, 475, 826
HindII	GTYRAC	3 cut(s)	319, 475, 826
HindIII	AAGCTT	5 cut(s)	722, 1867, 2097, 3304, 4140
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	935, 2057, 3416, 4366
Hpy99I	CGWCG	2 cut(s)	192, 479
HpyCH4IV	ACGT	2 cut(s)	3864, 4125
HpyF3I	CTNAG	9 cut(s)	384, 410, 1007, 1139, 1778, 2568, 2676, 3321, 3636
HpySE526I	ACGT	2 cut(s)	3864, 4125
HspAI	GCGC	4 cut(s)	1117, 3020, 3243, 4185
Kpn2I	TCCGGA	1 cut(s)	934
Ksp22I	TGATCA	1 cut(s)	2548
KspAI	GTTAAC	1 cut(s)	319
LmnI	GCTCC	9 cut(s)	342, 665, 1018, 1108, 1196, 2156, 3624, 3715, 4300
LweI	GCATC	8 cut(s)	787, 824, 1948, 2896, 3167, 3767, 4120, 4262
MaeI	CTAG	6 cut(s)	305, 1610, 1646, 1989, 2187, 4241
MaeII	ACGT	2 cut(s)	3864, 4125
MaeIII	GTNAC	7 cut(s)	758, 917, 1204, 2230, 2519, 3013, 3508
MfeI	CAATTG	2 cut(s)	789, 2694
MflI	RGATCY	5 cut(s)	976, 1253, 1445, 1492, 2434
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	4 cut(s)	1235, 1789, 3736, 3931
MmeI	TCCRAC	3 cut(s)	1060, 2731, 3442
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	934
MroXI	GAANNNNTTC	1 cut(s)	1549
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	3 cut(s)	156, 260, 3277
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	3 cut(s)	284, 414, 2546
MspCI	CTTAAG	1 cut(s)	3023
MspI	CCGG	4 cut(s)	935, 2057, 3416, 4366
MspR9I	CCNGG	8 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3417, 3817
MunI	CAATTG	2 cut(s)	789, 2694
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	7 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3817
NciI	CCSGG	1 cut(s)	3417
NdeI	CATATG	1 cut(s)	1299
NheI	GCTAGC	1 cut(s)	1988
NmuCI	GTSAC	4 cut(s)	917, 2519, 3013, 3508
NspI	RCATGY	5 cut(s)	649, 1733, 2384, 2805, 3155
PaeR7I	CTCGAG	1 cut(s)	3375
PasI	CCCWGGG	1 cut(s)	3107
PceI	AGGCCT	2 cut(s)	558, 1483
PciI	ACATGT	1 cut(s)	3151
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	1549
PfoI	TCCNGGA	2 cut(s)	2224, 3415
Ple19I	CGATCG	1 cut(s)	3896
PleI	GAGTC	4 cut(s)	1234, 1788, 3736, 3930
PmaCI	CACGTG	1 cut(s)	4126
PmlI	CACGTG	1 cut(s)	4126
PpsI	GAGTC	4 cut(s)	1234, 1788, 3736, 3930
Ppu21I	YACGTR	1 cut(s)	4126
PpuMI	RGGWCCY	2 cut(s)	1174, 2488
PscI	ACATGT	1 cut(s)	3151
PshAI	GACNNNNGTC	1 cut(s)	2988
PsiI	TTATAA	1 cut(s)	2418
Psp124BI	GAGCTC	2 cut(s)	339, 670
Psp1406I	AACGTT	1 cut(s)	3864
Psp5II	RGGWCCY	2 cut(s)	1174, 2488
Psp6I	CCWGG	7 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3815
PspCI	CACGTG	1 cut(s)	4126
PspEI	GGTNACC	1 cut(s)	758
PspFI	CCCAGC	2 cut(s)	234, 3620
PspGI	CCWGG	7 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3815
PspOMI	GGGCCC	1 cut(s)	3102
PspPI	GGNCC	6 cut(s)	148, 1174, 2283, 2488, 3102, 3103
PspPPI	RGGWCCY	2 cut(s)	1174, 2488
PstI	CTGCAG	1 cut(s)	2545
PstNI	CAGNNNCTG	1 cut(s)	1562
PsuI	RGATCY	5 cut(s)	976, 1253, 1445, 1492, 2434
PvuI	CGATCG	1 cut(s)	3896
PvuII	CAGCTG	2 cut(s)	414, 2546
RseI	CAYNNNNRTG	3 cut(s)	156, 260, 3277
SacI	GAGCTC	2 cut(s)	339, 670
SalI	GTCGAC	1 cut(s)	473
Sau96I	GGNCC	6 cut(s)	148, 1174, 2283, 2488, 3102, 3103
ScaI	AGTACT	1 cut(s)	4001
SchI	GAGTC	4 cut(s)	1235, 1789, 3736, 3931
ScrFI	CCNGG	8 cut(s)	642, 711, 1785, 2226, 3108, 3257, 3417, 3817
SfaNI	GCATC	8 cut(s)	787, 824, 1948, 2896, 3167, 3767, 4120, 4262
SfcI	CTRYAG	2 cut(s)	2541, 3171
Sfr274I	CTCGAG	1 cut(s)	3375
SinI	GGWCC	4 cut(s)	148, 1174, 2283, 2488
SlaI	CTCGAG	1 cut(s)	3375
SmiI	ATTTAAAT	1 cut(s)	1632
SmiMI	CAYNNNNRTG	3 cut(s)	156, 260, 3277
SmlI	CTYRAG	4 cut(s)	2951, 3023, 3375, 3698
SmoI	CTYRAG	4 cut(s)	2951, 3023, 3375, 3698
SseBI	AGGCCT	2 cut(s)	558, 1483
SsiI	CCGC	9 cut(s)	284, 294, 417, 432, 627, 2405, 3100, 4169, 4236
SspI	AATATT	3 cut(s)	2728, 3673, 4260
SspMI	CTAG	6 cut(s)	305, 1610, 1646, 1989, 2187, 4241
SstI	GAGCTC	2 cut(s)	339, 670
StuI	AGGCCT	2 cut(s)	558, 1483
StyD4I	CCNGG	8 cut(s)	640, 709, 1783, 2224, 3106, 3255, 3415, 3815
StyI	CCWWGG	4 cut(s)	559, 1609, 3314, 4351
SwaI	ATTTAAAT	1 cut(s)	1632
TaiI	ACGT	2 cut(s)	3867, 4128
TatI	WGTACW	7 cut(s)	635, 773, 926, 1504, 2042, 2171, 3999
TauI	GCSGC	3 cut(s)	287, 630, 4239
TscAI	CASTG	8 cut(s)	1494, 1921, 2244, 2914, 4111, 4187, 4235, 4444
TseFI	GTSAC	4 cut(s)	917, 2519, 3013, 3508
Tsp45I	GTSAC	4 cut(s)	917, 2519, 3013, 3508
TspGWI	ACGGA	2 cut(s)	336, 2854
TspRI	CASTG	8 cut(s)	1494, 1921, 2244, 2914, 4111, 4187, 4235, 4444
Vha464I	CTTAAG	1 cut(s)	3023
VpaK11BI	GGWCC	4 cut(s)	148, 1174, 2283, 2488
XagI	CCTNNNNNAGG	2 cut(s)	1649, 1836
XapI	RAATTY	8 cut(s)	65, 139, 954, 1351, 1757, 3335, 3369, 4428
XceI	RCATGY	5 cut(s)	649, 1733, 2384, 2805, 3155
XcmI	CCANNNNNNNNNTGG	2 cut(s)	602, 1681
XhoI	CTCGAG	1 cut(s)	3375
XmaJI	CCTAGG	1 cut(s)	1609
XmiI	GTMKAC	4 cut(s)	474, 2121, 3263, 4347
XmnI	GAANNNNTTC	1 cut(s)	1549
XspI	CTAG	6 cut(s)	305, 1610, 1646, 1989, 2187, 4241
ZrmI	AGTACT	1 cut(s)	4001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.