Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006724

Physical Location & Seq

Genomic Coordinates Forward (+)

21632259 .. 21633619

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAGCCAGTCGGATCAAGGGAACACCCCTGATGGCTCGTCAAGTATCCCCATGAAGCGAAAACGTGGCCGTCCACGAAAATATCCCAAACTAGATCTGGAAGAGAATGCTTATGTGAGAAATGCTCCAAATCTGAACTCGGGGGAAAATGCTGGTACTGGTGTTCCTTCTGCTCCTCCTGGATTTCTAGGGAGGAATGGATACCAGCCACATCATGGAGCTCCCAGTAATGGTGCAGCTGATGTCATGGTCGGAACAGTTGTTTCTGGTGTCATTGATGCAACATTTGATGGAGGATATCTACTTAGTGTTAGGGTTGGCAACTCTGCCACCACTATGAGGGGTGTTATCTTCAAGCCTGGACATTACGTTCCTGTTTCAGCAGAGAATGACGTGGCCCCAGATGTTCAAATGATGAGGCGAAATGTGATTCCAATTCCAGCTGAGATCTATCATTTCCATGGTTCGAGCCCTCGTTCTAGAGATGCCATTCGATCTGTTAATCATGTAGCATCAAAACGCAAACATATGGTTCCAGTGGCACCCCAAACTGCTAGCCCACTACTGTCCAGAGGCAACTTGTTGCCTGTTGTACTGCAACCTCGAAATTTATCTGAAGGGGTACCATTCACTGGTTTATCAAATTCTGTTGCACCAGGTGCTCCTCCTACCAATGGGCCAATGTGCACCATCCGGATGCCACTCGCCAATGAAGTTGTAAAATCTTCAGATCTGGCAACTTCAAAAGTTAAGCAGGTTCCATCAGTTCCTCCATCAAATGGGTCGATATCTACCAACCAGATTCCAAGGGTTGGAAATCAATCGTTGGTCTTTGAAGGTGGACAAAATGAGAAAGGTACTCGTAATCAACCATCAACAGAGACGCTGAAGGCAGAAGCCAAATCACCGAGACTCCCAAATATACCTTTTGAAAAATTGGTTACCGAGGTAGTTAAGAGGATTGATACACCCTCACAAGCCCCCTCACATTCAACTGAGATGAACATTGAGGGTAGCAAGTCAACTGGCAGTGAGCTGGAGAACGATATGGATCAGCCTTTAGTAATTGAGCCTCTGCAAGCCATACAGCCTAAAGACTACTCTATACCACATTCAAAACCCCCCGAGGACGATAGAAATGGAAAAATGTCTGAGCTGTTGCAGGTTTTGCAGGAAAGCATGAGGGAAAGCGAGTCAACCACAGAGTCGAAAGCGAAGATGGATGAACCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

44.09

Weight (kDa)

8.48

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54930 AT5G54930
fragaria_vesca	FvH4_3g22550 FvH4_3g22550 FvH4_3g22550
malus_domestica	MD03G1202000.v1.1 MD11G1219200.v1.1
prunus_persica	Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1 Prupe.4G212100_v2.0.a1
pyrus_communis	pycom03g15330 pycom11g19310
rosa_chinensis	RchiOBHm_Chr5g0039291
rosa_laevigata	RLG00000033904
rosa_multiflora	Rmu_ssc0000410.1_g000050
rosa_roxburghii	Rroxscaffold_1G00040490 Rroxscaffold_1G00041850
rosa_rugosa	Rorug05G0177800 Rorug05G0177900 Rorug05G0178000
rosa_samantha	Rh5AG264200 Rh5BG269300 Rh5CG302200 Rh5DG276900
rosa_wichuraiana	Rw5G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	745, 1153
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	2 cut(s)	541, 622
AccB7I	CCANNNNNTGG	4 cut(s)	215, 632, 779, 812
AccIII	TCCGGA	1 cut(s)	693
AclWI	GGATC	2 cut(s)	21, 1059
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	607, 643
AcuI	CTGAAG	3 cut(s)	636, 711, 908
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	4 cut(s)	157, 594, 624, 859
AfiI	CCNNNNNNNGG	7 cut(s)	215, 230, 339, 632, 674, 779, 812
AgsI	TTSAA	7 cut(s)	355, 410, 744, 836, 932, 993, 1116
AjiI	CACGTC	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	178, 358, 655
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	6 cut(s)	221, 239, 443, 1036, 1156, 1233
AluI	AGCT	6 cut(s)	221, 239, 443, 1036, 1156, 1233
Alw21I	GWGCWC	3 cut(s)	223, 664, 689
Alw26I	GTCTC	2 cut(s)	875, 904
Alw44I	GTGCAC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	21, 1059
Ama87I	CYCGRG	2 cut(s)	139, 1124
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	3 cut(s)	67, 396, 677
ApaLI	GTGCAC	1 cut(s)	685
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	607, 643
Asp718I	GGTACC	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	397, 677
AsuHPI	GGTGA	1 cut(s)	897
AsuNHI	GCTAGC	1 cut(s)	554
AvaI	CYCGRG	2 cut(s)	139, 1124
BaeGI	GKGCMC	1 cut(s)	689
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BanI	GGYRCC	2 cut(s)	541, 622
BanII	GRGCYC	2 cut(s)	223, 473
Bbv12I	GWGCWC	3 cut(s)	223, 664, 689
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	7 cut(s)	26, 284, 698, 769, 781, 880, 1213
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	3 cut(s)	180, 360, 657
BciVI	GTATCC	2 cut(s)	56, 194
BcoDI	GTCTC	2 cut(s)	875, 904
BfaI	CTAG	5 cut(s)	92, 188, 480, 555, 1234
BfuAI	ACCTGC	2 cut(s)	745, 1153
BfuI	GTATCC	2 cut(s)	56, 194
BglII	AGATCT	3 cut(s)	94, 447, 730
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	180, 360, 657
BmeT110I	CYCGRG	2 cut(s)	139, 1124
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	397, 677
BmiI	GGNNCC	5 cut(s)	399, 534, 543, 624, 759
BmrFI	CCNGG	3 cut(s)	180, 360, 657
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	4 cut(s)	268, 475, 521, 687
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaJI	CCNNGG	4 cut(s)	460, 806, 945, 1125
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	7 cut(s)	215, 230, 339, 632, 674, 779, 812
Bse1I	ACTGG	6 cut(s)	7, 163, 225, 536, 637, 1030
Bse8I	GATNNNNATC	1 cut(s)	1050
BseAI	TCCGGA	1 cut(s)	693
BseBI	CCWGG	3 cut(s)	180, 360, 657
BseDI	CCNNGG	4 cut(s)	460, 806, 945, 1125
BseGI	GGATG	3 cut(s)	690, 702, 1228
BseJI	GATNNNNATC	1 cut(s)	1050
BseLI	CCNNNNNNNGG	7 cut(s)	215, 230, 339, 632, 674, 779, 812
BseMII	CTCAG	3 cut(s)	435, 987, 1143
BseNI	ACTGG	6 cut(s)	7, 163, 225, 536, 637, 1030
BseRI	GAGGAG	2 cut(s)	165, 654
BseSI	GKGCMC	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	69, 398, 679
BshNI	GGYRCC	2 cut(s)	541, 622
BsiHKAI	GWGCWC	3 cut(s)	223, 664, 689
BsiHKCI	CYCGRG	2 cut(s)	139, 1124
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	7 cut(s)	215, 230, 339, 632, 674, 779, 812
BsmAI	GTCTC	2 cut(s)	875, 904
BsmBI	CGTCTC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	69, 398, 679
BsoBI	CYCGRG	2 cut(s)	139, 1124
Bsp1286I	GDGCHC	4 cut(s)	223, 473, 664, 689
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
Bsp19I	CCATGG	1 cut(s)	460
BspANI	GGCC	3 cut(s)	69, 398, 679
BspCNI	CTCAG	3 cut(s)	436, 988, 1144
BspEI	TCCGGA	1 cut(s)	693
BspLI	GGNNCC	5 cut(s)	399, 534, 543, 624, 759
BspMI	ACCTGC	2 cut(s)	745, 1153
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	21, 1059
BspT107I	GGYRCC	2 cut(s)	541, 622
BsrI	ACTGG	6 cut(s)	7, 163, 225, 536, 637, 1030
BssECI	CCNNGG	4 cut(s)	460, 806, 945, 1125
BssMI	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
BssT1I	CCWWGG	2 cut(s)	460, 806
Bst2UI	CCWGG	3 cut(s)	180, 360, 657
Bst4CI	ACNGT	2 cut(s)	259, 567
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	2 cut(s)	659, 1168
BstC8I	GCNNGC	2 cut(s)	556, 1080
BstDEI	CTNAG	4 cut(s)	305, 444, 996, 1152
BstDSI	CCRYGG	1 cut(s)	460
BstEII	GGTNACC	1 cut(s)	940
BstF5I	GGATG	3 cut(s)	690, 702, 1228
BstKTI	GATC	6 cut(s)	16, 97, 450, 497, 733, 1054
BstMAI	GTCTC	2 cut(s)	875, 904
BstMBI	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 1168
BstNI	CCWGG	3 cut(s)	180, 360, 657
BstPI	GGTNACC	1 cut(s)	940
BstSCI	CCNGG	3 cut(s)	178, 358, 655
BstSLI	GKGCMC	1 cut(s)	689
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	3 cut(s)	94, 447, 730
BstYI	RGATCY	3 cut(s)	94, 447, 730
BsuI	GTATCC	2 cut(s)	56, 194
BsuRI	GGCC	3 cut(s)	69, 398, 679
BtgI	CCRYGG	1 cut(s)	460
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	690, 702, 1228
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	3 cut(s)	543, 630, 1036
BveI	ACCTGC	2 cut(s)	745, 1153
Cac8I	GCNNGC	2 cut(s)	556, 1080
Cfr13I	GGNCC	2 cut(s)	397, 677
CseI	GACGC	1 cut(s)	892
CsiI	ACCWGGT	1 cut(s)	655
Csp6I	GTAC	4 cut(s)	156, 593, 623, 858
CviAII	CATG	6 cut(s)	52, 215, 247, 461, 506, 1180
CviQI	GTAC	4 cut(s)	156, 593, 623, 858
DdeI	CTNAG	4 cut(s)	305, 444, 996, 1152
DpnI	GATC	6 cut(s)	15, 96, 449, 496, 732, 1053
DpnII	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	460, 806
Eco24I	GRGCYC	2 cut(s)	223, 473
Eco32I	GATATC	2 cut(s)	299, 789
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	3 cut(s)	636, 711, 908
Eco88I	CYCGRG	2 cut(s)	139, 1124
Eco91I	GGTNACC	1 cut(s)	940
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	940
EcoRII	CCWGG	3 cut(s)	178, 358, 655
EcoRV	GATATC	2 cut(s)	299, 789
EcoT14I	CCWWGG	2 cut(s)	460, 806
EcoT38I	GRGCYC	2 cut(s)	223, 473
ErhI	CCWWGG	2 cut(s)	460, 806
Esp3I	CGTCTC	1 cut(s)	875
FaeI	CATG	6 cut(s)	55, 218, 250, 464, 509, 1183
FatI	CATG	6 cut(s)	51, 214, 246, 460, 505, 1179
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	677, 709
FriOI	GRGCYC	2 cut(s)	223, 473
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	5 cut(s)	92, 188, 480, 555, 1234
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	1058
HaeIII	GGCC	3 cut(s)	69, 398, 679
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	892
Hin1II	CATG	6 cut(s)	55, 218, 250, 464, 509, 1183
HincII	GTYRAC	2 cut(s)	1023, 1197
HindII	GTYRAC	2 cut(s)	1023, 1197
HinfI	GANTC	5 cut(s)	430, 802, 912, 1193, 1205
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	1 cut(s)	897
Hpy166II	GTNNAC	5 cut(s)	74, 687, 842, 1023, 1197
Hpy188I	TCNGA	6 cut(s)	13, 135, 254, 616, 730, 1153
Hpy188III	TCNNGA	4 cut(s)	98, 480, 570, 694
Hpy8I	GTNNAC	5 cut(s)	74, 687, 842, 1023, 1197
HpyAV	CCTTC	4 cut(s)	177, 611, 830, 883
HpyCH4III	ACNGT	2 cut(s)	259, 567
HpyCH4IV	ACGT	3 cut(s)	64, 369, 393
HpyCH4V	TGCA	8 cut(s)	236, 281, 598, 653, 687, 1078, 1162, 1171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 1168
HpyF3I	CTNAG	4 cut(s)	305, 444, 996, 1152
HpySE526I	ACGT	3 cut(s)	64, 369, 393
Hsp92II	CATG	6 cut(s)	55, 218, 250, 464, 509, 1183
Kpn2I	TCCGGA	1 cut(s)	693
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
LmnI	GCTCC	5 cut(s)	130, 178, 218, 226, 667
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	4 cut(s)	268, 475, 521, 687
MabI	ACCWGGT	1 cut(s)	655
MaeI	CTAG	5 cut(s)	92, 188, 480, 555, 1234
MaeII	ACGT	3 cut(s)	64, 369, 393
MaeIII	GTNAC	1 cut(s)	940
MalI	GATC	6 cut(s)	15, 96, 449, 496, 732, 1053
MboI	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
MboII	GAAGA	4 cut(s)	113, 343, 717, 1228
MflI	RGATCY	3 cut(s)	94, 447, 730
MhlI	GDGCHC	4 cut(s)	223, 473, 664, 689
MluCI	AATT	5 cut(s)	435, 607, 643, 935, 1065
MlyI	GAGTC	3 cut(s)	906, 1202, 1214
MmeI	TCCRAC	2 cut(s)	232, 793
MroI	TCCGGA	1 cut(s)	693
MseI	TTAA	3 cut(s)	501, 750, 954
MslI	CAYNNNNRTG	3 cut(s)	335, 459, 695
MspA1I	CMGCKG	2 cut(s)	239, 443
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	3 cut(s)	180, 360, 657
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	3 cut(s)	180, 360, 657
MwoI	GCNNNNNNNGC	2 cut(s)	659, 1168
NcoI	CCATGG	1 cut(s)	460
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	6 cut(s)	55, 218, 250, 464, 509, 1183
NlaIV	GGNNCC	5 cut(s)	399, 534, 543, 624, 759
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	430, 802
PflMI	CCANNNNNTGG	4 cut(s)	215, 632, 779, 812
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	906, 1201, 1213
PpsI	GAGTC	3 cut(s)	906, 1201, 1213
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	178, 358, 655
PspEI	GGTNACC	1 cut(s)	940
PspGI	CCWGG	3 cut(s)	178, 358, 655
PspN4I	GGNNCC	5 cut(s)	399, 534, 543, 624, 759
PspPI	GGNCC	2 cut(s)	397, 677
PsuI	RGATCY	3 cut(s)	94, 447, 730
PvuII	CAGCTG	2 cut(s)	239, 443
RsaI	GTAC	4 cut(s)	157, 594, 624, 859
RsaNI	GTAC	4 cut(s)	156, 593, 623, 858
RseI	CAYNNNNRTG	3 cut(s)	335, 459, 695
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	501, 750, 954
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	6 cut(s)	13, 94, 447, 494, 730, 1051
Sau96I	GGNCC	2 cut(s)	397, 677
SchI	GAGTC	3 cut(s)	906, 1202, 1214
ScrFI	CCNGG	3 cut(s)	180, 360, 657
SduI	GDGCHC	4 cut(s)	223, 473, 664, 689
SexAI	ACCWGGT	1 cut(s)	655
SfaNI	GCATC	4 cut(s)	268, 475, 521, 687
SmiMI	CAYNNNNRTG	3 cut(s)	335, 459, 695
Sse9I	AATT	5 cut(s)	435, 607, 643, 935, 1065
SspMI	CTAG	5 cut(s)	92, 188, 480, 555, 1234
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	178, 358, 655
StyI	CCWWGG	2 cut(s)	460, 806
TaaI	ACNGT	2 cut(s)	259, 567
TaiI	ACGT	3 cut(s)	67, 372, 396
TaqI	TCGA	5 cut(s)	467, 493, 604, 785, 1208
TasI	AATT	5 cut(s)	435, 607, 643, 935, 1065
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	430, 802
Tru1I	TTAA	3 cut(s)	501, 750, 954
Tru9I	TTAA	3 cut(s)	501, 750, 954
TscAI	CASTG	3 cut(s)	543, 637, 1036
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	68, 726, 1016
TspRI	CASTG	3 cut(s)	543, 637, 1036
Van91I	CCANNNNNTGG	4 cut(s)	215, 632, 779, 812
VneI	GTGCAC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	607, 643
XbaI	TCTAGA	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 212
XspI	CTAG	5 cut(s)	92, 188, 480, 555, 1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.