Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Forward (+)

25639400 .. 25647293

Gene Structure 7894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5298 bp

ATGGTGGGGACTCGATCGAATGATAAGAATGGGGAATTTGAAAGTGGGAGGCATAGAGTTGTCAAATCAAAGGGACCAGGGAGGATTAGAGCAACAAATAGTTCAGACCATGAACAGAGAGAGGAGTTGCCCGCGAATAAAGATGAACTTGTGGAGGAGGAAGCAGAGGTGATAATTAAGAATGAAGATGTTGCTATGCAATTGGATAGCGAAATGGATGGTGGCAAGGAAATGGAAATAGTGGACGATGATTCCACAATGATAACTGAGGCAGGGGAGAATTCAAAATTAGAGGAAGCGTGCATTGTTAATGAGCATGTGGCAACAATGGACAATGCAGAGGTGATGGAACGTGCTGATGACCTTGTTGCAACTGTGGACAATGTGGATACGATGGAACATGCTAATGAGCTTGTGGCAACTATGGACAATGTGGAGACGATGGAACATGCTGATGAGCATTTGGAAGCTATGGACAATGTGGAGCCAACGGAACATGCTGATGAACAGGTGGAGCAATCTGAGTGCGTGATTCAAGAAGAAAGTAATGGTAAGCATGTGAAACAATTAGAGTGTGTGAAGGAAGGAGAAAATCAAGGGGATGCTAGGGTTTCAGAAGCTGTTGGAGTTTCAAGAAATGAAGTGGAAGTAGCAGGGTGTCATGAAGGGAAGGATTCTGATTCGTCCAAGCCTGATGAAGAGCTTGCAATAGAAATGAATAATGCGAAGGTGGATAAGTTTAAGCATAGGAAAAGTGATACACTTGGCAAGCTACACATTAAGGAGGGCAGAAGGTGTGGTTTGTGTGGGGGAGGGACTGATGGTAAACCTCCAAAAAGATTAGTTCTTGATACGGGTGAGAGCGAGAATGAGGCATACTGTGGCTCTTCAGCCTCTGAGGAACTTAACTATAACCTATGGGATGGTTTTGGTGATGAACCTGGTTGGCTTGGACGTCTGTTGGGTCCTGTAAATGATCGTTACGGTATTGCCGGAATATGGGTCCATCAAAACTGTGCTGTGTGGAGTCCAGAGGTTTATTTTGCTGGTTTAGGATGCTTAAAAAATGTGAGGGCTGCACTATGCAGAGGGAGAGCATTAAAATGCACCCGCTGTGGAAGGGCAGGAGCTACAATTGGGTGCCGCGTTGATCGGTGTCCAAGAACTTACCACTTGCCTTGTGCACGAGCTTATGGTTGTGTATTTGATCACCGCAAATTTCTTATTGCCTGTACTGATCATCGGAATCTCTTCCAACCTCTTGGTGATCAATATTTAGCCCGTATAAAGAAATTAAAGGCTAAGAAGATGAAGATGGAAACGAGAAAACTTTCAAATGATGCTTTGCGGAAGGATATTGAGGCAGAAGAAAAATGGTTAGAGAATTGTGGTGAGGATGAAGAGTTTTTGAAACGTGAAAGTAAGAGGCTTCATCGGGATTTGGTGAGAATTGCACCCGTTTACATTGGAGGCTCCGACTCAGAGAGTGGAAAACTATTTCAGGGTTGGGAATCTGTTGCAGGCCTTCAAGATGTCATTGGGTGCATGAAGGAAGTTGTCATGTTGCCTCTTTTATATCCAGAGTTCTTTGATAGTCTTGGTCTCACACCTCCTAGAGGTGTTCTTTTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTCCGGGCATTAATAGGTGCTTGTGCACGTGGTGATAAACGGATAGCATATTTTGCTCGCAAAGGTGCAGATTGTCTAGGGAAATATGTAGGTGATTCAGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAAATGTCAGCCTTCTGTAATATTCTTTGATGAGATAGATGGGTTGGCACCTTCTCGAACGAGGCAGCAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTTGCTTTAATGGATGGTTTGAAATCTCGAGGTTCAGTTGTAGTTATAGGCGCTACAAATCGTCCTGATGCTGTTGATCCAGCATTGAGGCGGCCTGGACGATTTGATAGGGAAATCTATTTTCCACTGCCATCAGTGGAGGACCGAGCTGCCATTCTTTCACTTCACACTCAAAAGTGGCCAAAACCAGTTGCTGGATCCATCCTCAAGTTGGTTGCAAGCAGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTATGTACTCAAGCGGCTATCATTTCTTTGAAGAGAAATTTCCCTTTGCAAGAAGTTTTGTCTACCGCTGGAAAGAATGCTTCTGACCACAAGCGCCTCTCTCTTCCTGCCTTTGCAGTGGAGGACAGGGACTGGTTGGAAGCTCTCTCATGTTCTCCGCCTCCCTGCTCTCGTAGAGAAGCAGGAGTAGCTGCTAATGATGTAGTGTGCTCTCCTCTTCCTACCCATCTTATCCCATGTCTGCTACAACCATTATCTACTATGCTTGTTTCCCTTTATCTTGATGAACGCCTCTGGTTGCCGGCTCCTCTCAGAAAATCTGCAAGAATGATTGAAAGTGTGATGGTTTCTGCTTTGAATAAGAAGAAGATGCCCAGTGATCGTTGGTGGTCCCATATACCAGTCTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCGCACTGGCATTTTACTGGGATATGATACTTGTGGTGATTCTGATGCTTTTAATGACGATCATGATGATGACCACAGTTTGAAGTTTCAGCCTTCTGTTAAACACCATGGTGGCACACGCCTGAGTTTGTTGCGGAATATATCCGTTGCCTCAACAAACAAATCAGGATTCCGGATATTGATTGCTGGAAATCCCAGAGCTGGGCAAAGGCATCTTGCTTCTTGCCTTCTTCATTTTTTTGTTGGAAATGTACAAGTTCAGAAGGTTGATTTGGCTACAGTTTTACAAGAAGGGCATGGAGATATGGTGCAAGGCATAACACAAATATTAATGAAATGTGCTAGTGTTGGGTCATCTATAGTTTTCATGCCACGAATTGATTTGTGGGCTGTGGAGACACTTCTTCCAATGACAGAGGAAAGTGATTCCGACTTATCAGACCATCTACTTACTGAAAATGAAAAATCATATCCTGTACATGGTCAAGCTGTTGAAGAGGGGAGTGGGCCCAATTCACAGCAATGCAAATCAATAGAAATGGGAGAGTGCACAGGTGTTTCTCAGAGCGCTTCACATGCCTGGAACTTATTTGTTGAGCAGGTGGAGTCTATTTGCGTCTCCTCATCCTTGATGATTCTGGCTACATCGGAAGTTCCATATTCAGTACTTCCAGTAAGAATAAGACAGTTCTTCAAGAGTGACATATCAGATTGCAATCAGTCAATTCCTATGAAGAATACAGTTCCCCGATTTTCTGTGCGGATCGATGAAGATTTCAACCATGATTTGGTGATCAATCTATCCACAGAAGAGTTATTAAGGGATATAGTTCAACAGGTTGTTCTGTTAATTCATCAAAAGTCCCACATCCATACAACTTCATACCAGGAGTATGGAACTTGTAATCCTCGGGAGCATCAATCAGAGATGGTTAATCACAGTACAGTTCATGGATCAGCTGATGTCAACAACAGTGTAACACAGGGTCCTGATGAATCTCTTCTTAAAGTTCATCTACCGCCTGACAATAGAAGTGTGAAGGGGAAGTCAAACTTGCTTCTTGCAATTTCTTCATTTGGCTATCAAATTCTGCAATATCCTCATTTTGCTGAGCTTTGTTGGTTTACTTCAAAACTCAAAGAAGGTCCCTCTGCAGACATAAGTGGACCTTGGAAGGGCTGGCCATTCAATCCTTGTATAGTTCGACCTAATAACTCAATTGAAAAGGTAGCTGTTGCTTGTAGCTCCAGCAATACTAAAAGCAAAGAAAAATTTGGTCTAGTTAGAGGCCTTGTTGCTGTTGGTTTATCGGCATATAGAGGTGTCTATATGTCACTCAGGGAAGTCTCCTTTGAGATACGGAAGGTTCTTGAGCTTCTAGTTGCTGAGGTCAATTCAAAGATTCAGGCTGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCCTATCTGGAAGACGTGGTTAATAGCTGGGCATACACGCTCCATAGTTTAGAGTTGGATGCTCCAATGAAAATGGAAAATGATAAGCTAACTGATGTGAGACCTCCAAAAGATGACGATGTGAGACCTCCAGATGATCACCATGTGGATGGACAAGTTCAAACTGAGGAACCCAAGCCAAATAATACTAGCAAATGCTCTGACAAGCTTGAAGCGCCGGAAAGTGTCCCTCAAGGGTTTGATACTGAAAAAGTCGGTTTTGTTGACTTCAACAAAGATGGTGAGTTGGGCCATCCTGATTCTGAGGGTAGACTTGCAATTTCAGATTTGTCTGGACAGAAAATTGTCGTAATGGATTCTACCCTGGATAAATCTCTTCTTGGTTCCAATGAAAGTTTGAATGATCAGAATGGGACAAGCCCCAAGCCGCATGAATCAAAAAATGACAGAAACCATGTCGAAGTGAGTGGAGATTCTGGATCCTTGAAACATTCAAATGGATTTGACTGCACTGAATCTGTTGTCATTTCTGAGGATGGTTCTACTTCCGGTGAATTTGGAAGCATTAAGCTCTCAAGCTCTAGGGCCATCTGCAACGAGGTTAACGGTTTGTCCTCAATGGAGGCTGGTATTATACTTAATAATGGTAAGTGTGATGCCAATGAGCATATTGTAGGCGTTGACACCTCGAACAAAACATTTCTCCCTACCAAGTCTGGGGTTCTATGCTTGTATCGTTGTTGCCCTACATGCCTAGATACCCTCCACAGTTTGACACATAAAATTCTTATTCACAAATGGGGATCAAATAAGAGCCAATGGACTATAGAGGATGCTCATGATATCGTTGCATCAGCGTCTGTTGATCTTCTTTCAGCCATTAGAAGAATTGTCGGTTCTGGAGGTTTCAGCAACTCACCGGATAATAAAATGAGAGACAGAAATAGTGAGAAGTTCAAATGGCCGGAAGCAGTTACATGTCACTGCAAAAATTCAGGAACTAAGAGTCTTTTGCCAGTGGAATGTAAATGCCACACCATCATTGAGGACACAGCAACTACGGCAAAAGCTTCCCCGACTACTCATCACAGGTTTGATCCAAAATTTATTTTCAGAGATGGTGTACTGATTCATATGGATCCTGAGAAGGATGTTTCTTTCCACTGTAAATTCGAGACCCTGTGCCTCTGTTCTCTTATAGAGTTGATACTAATGGCCGAGCAGCCTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1766

Amino Acids

195.01

Weight (kDa)

5.59

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	333 - 406	3e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	336 - 415	6e-11	PHD-like zinc-binding domain
AAA	PF00004	541 - 676	2.4e-38	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	702 - 734	2.2e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3199
AatII	GACGTC	1 cut(s)	958
Acc16I	TGCGCA	1 cut(s)	2612
Acc36I	ACCTGC	1 cut(s)	3199
AccB1I	GGYRCC	2 cut(s)	1140, 1843
AccB7I	CCANNNNNTGG	2 cut(s)	2093, 3397
AccI	GTMKAC	2 cut(s)	2219, 4372
AccII	CGCG	2 cut(s)	134, 1146
AccIII	TCCGGA	1 cut(s)	2781
AcoI	YGGCCR	4 cut(s)	2078, 3791, 5024, 5277
AcuI	CTGAAG	2 cut(s)	873, 2552
AcvI	CACGTG	1 cut(s)	1691
AcyI	GRCGYC	1 cut(s)	955
AdeI	CACNNNGTG	2 cut(s)	1694, 4207
AfaI	GTAC	7 cut(s)	1234, 2164, 2862, 3087, 3276, 3553, 5187
AfeI	AGCGCT	1 cut(s)	3178
AflIII	ACRYGT	1 cut(s)	5039
AjiI	CACGTC	1 cut(s)	4078
AjnI	CCWGG	7 cut(s)	76, 940, 1639, 1993, 3188, 3495, 4425
AjuI	GAANNNNNNNTTGG	2 cut(s)	2864, 2896
AleI	CACNNNNGTG	1 cut(s)	2718
AloI	GAACNNNNNNTCC	2 cut(s)	3499, 3531
Alw21I	GWGCWC	4 cut(s)	1186, 1690, 2369, 3161
Alw26I	GTCTC	9 cut(s)	431, 1607, 2999, 3232, 3961, 4156, 4180, 4992, 5231
Alw44I	GTGCAC	3 cut(s)	1182, 1686, 3157
AlwNI	CAGNNNCTG	5 cut(s)	620, 896, 2093, 2289, 4922
Ama87I	CYCGRG	2 cut(s)	1926, 3519
Aor13HI	TCCGGA	1 cut(s)	2781
Aor51HI	AGCGCT	1 cut(s)	3178
ApaI	GGGCCC	1 cut(s)	3120
ApaLI	GTGCAC	3 cut(s)	1182, 1686, 3157
ApeKI	GCWGC	5 cut(s)	1076, 1861, 2048, 2348, 5284
AseI	ATTAAT	2 cut(s)	1673, 2939
Asp700I	GAANNNNTTC	3 cut(s)	1250, 1330, 3609
AspLEI	GCGC	6 cut(s)	1767, 1952, 2253, 2613, 3179, 4279
AsuC2I	CCSGG	1 cut(s)	1667
AvaI	CYCGRG	2 cut(s)	1926, 3519
AvaII	GGWCC	8 cut(s)	74, 965, 1003, 2041, 2547, 3596, 3755, 3776
BaeGI	GKGCMC	4 cut(s)	1186, 1690, 3120, 3161
BalI	TGGCCA	2 cut(s)	2080, 3793
BamHI	GGATCC	3 cut(s)	2096, 4541, 5200
BanI	GGYRCC	2 cut(s)	1140, 1843
BanII	GRGCYC	1 cut(s)	3120
BauI	CACGAG	1 cut(s)	1185
BbrPI	CACGTG	1 cut(s)	1691
BbsI	GAAGAC	1 cut(s)	4080
Bbv12I	GWGCWC	4 cut(s)	1186, 1690, 2369, 3161
BbvCI	CCTCAGC	1 cut(s)	3996
BbvI	GCAGC	4 cut(s)	1063, 1873, 2035, 2335
BceAI	ACGGC	1 cut(s)	5139
BciT130I	CCWGG	7 cut(s)	78, 942, 1641, 1995, 3190, 3497, 4427
BciVI	GTATCC	2 cut(s)	382, 1647
BclI	TGATCA	6 cut(s)	1207, 1237, 1267, 3402, 4198, 4465
BcnI	CCSGG	1 cut(s)	1667
BcoDI	GTCTC	9 cut(s)	431, 1607, 2999, 3232, 3961, 4156, 4180, 4992, 5231
BfaI	CTAG	9 cut(s)	606, 1614, 1739, 2952, 3890, 3989, 4251, 4644, 4817
BfmI	CTRYAG	5 cut(s)	2150, 2886, 2967, 3762, 4887
BfoI	RGCGCY	5 cut(s)	1768, 1953, 2254, 3180, 4280
BfuAI	ACCTGC	1 cut(s)	3199
BfuI	GTATCC	2 cut(s)	382, 1647
BglII	AGATCT	1 cut(s)	2146
BisI	GCNGC	9 cut(s)	1077, 1144, 1862, 1991, 2049, 2172, 2349, 4490, 5285
BlpI	GCTNAGC	1 cut(s)	3720
BlsI	GCNGC	9 cut(s)	1078, 1145, 1863, 1992, 2050, 2173, 2350, 4491, 5286
BmcAI	AGTACT	1 cut(s)	3276
Bme1390I	CCNGG	8 cut(s)	78, 942, 1641, 1667, 1995, 3190, 3497, 4427
Bme18I	GGWCC	8 cut(s)	74, 965, 1003, 2041, 2547, 3596, 3755, 3776
BmeT110I	CYCGRG	2 cut(s)	1926, 3519
BmgBI	CACGTC	1 cut(s)	4078
BmrFI	CCNGG	8 cut(s)	78, 942, 1641, 1667, 1995, 3190, 3497, 4427
BmrI	ACTGGG	2 cut(s)	2526, 2636
BmuI	ACTGGG	2 cut(s)	2526, 2636
BpiI	GAAGAC	1 cut(s)	4080
BpmI	CTGGAG	3 cut(s)	3841, 4176, 4983
Bpu10I	CCTNAGC	1 cut(s)	3996
Bpu1102I	GCTNAGC	1 cut(s)	3720
BpuEI	CTTGAG	5 cut(s)	2090, 2151, 4001, 4278, 4621
BpuMI	CCSGG	1 cut(s)	1667
Bsa29I	ATCGAT	1 cut(s)	3375
BsaAI	YACGTR	1 cut(s)	1691
BsaBI	GATNNNNATC	2 cut(s)	3324, 4032
BsaHI	GRCGYC	1 cut(s)	955
BsaI	GGTCTC	4 cut(s)	1607, 4156, 4180, 5231
BsaJI	CCNNGG	5 cut(s)	77, 2716, 3518, 3779, 4425
BsaWI	WCCGGW	3 cut(s)	2781, 4610, 4981
BsaXI	ACNNNNNCTCC	2 cut(s)	2901, 2931
Bse118I	RCCGGY	1 cut(s)	2458
Bse1I	ACTGG	8 cut(s)	2087, 2294, 2532, 2558, 2620, 2631, 3281, 5078
Bse3DI	GCAATG	1 cut(s)	3137
Bse8I	GATNNNNATC	2 cut(s)	3324, 4032
BseAI	TCCGGA	1 cut(s)	2781
BseBI	CCWGG	7 cut(s)	78, 942, 1641, 1995, 3190, 3497, 4427
BseCI	ATCGAT	1 cut(s)	3375
BseDI	CCNNGG	5 cut(s)	77, 2716, 3518, 3779, 4425
BseJI	GATNNNNATC	2 cut(s)	3324, 4032
BseMI	GCAATG	1 cut(s)	3137
BseNI	ACTGG	8 cut(s)	2087, 2294, 2532, 2558, 2620, 2631, 3281, 5078
BseRI	GAGGAG	5 cut(s)	137, 170, 2361, 2454, 3220
BseSI	GKGCMC	4 cut(s)	1186, 1690, 3120, 3161
BseXI	GCAGC	4 cut(s)	1063, 1873, 2035, 2335
BseYI	CCCAGC	3 cut(s)	2810, 4019, 4089
BsgI	GTGCAG	4 cut(s)	1062, 1749, 2163, 4555
Bsh1236I	CGCG	2 cut(s)	134, 1146
Bsh1285I	CGRYCG	1 cut(s)	17
BshNI	GGYRCC	2 cut(s)	1140, 1843
BshVI	ATCGAT	1 cut(s)	3375
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	4 cut(s)	1186, 1690, 2369, 3161
BsiHKCI	CYCGRG	2 cut(s)	1926, 3519
BsiSI	CCGG	8 cut(s)	993, 1666, 2459, 2782, 4280, 4611, 4982, 5027
BslFI	GGGAC	9 cut(s)	22, 87, 829, 2300, 2533, 3457, 3741, 4274, 4489
BsmAI	GTCTC	9 cut(s)	431, 1607, 2999, 3232, 3961, 4156, 4180, 4992, 5231
BsmBI	CGTCTC	2 cut(s)	431, 3232
BsmFI	GGGAC	9 cut(s)	22, 87, 829, 2300, 2533, 3457, 3741, 4274, 4489
BsmI	GAATGC	1 cut(s)	2239
Bso31I	GGTCTC	4 cut(s)	1607, 4156, 4180, 5231
BsoBI	CYCGRG	2 cut(s)	1926, 3519
Bsp120I	GGGCCC	1 cut(s)	3116
Bsp1286I	GDGCHC	5 cut(s)	1186, 1690, 2369, 3120, 3161
Bsp13I	TCCGGA	1 cut(s)	2781
Bsp1407I	TGTACA	2 cut(s)	2860, 3085
Bsp1720I	GCTNAGC	1 cut(s)	3720
Bsp19I	CCATGG	1 cut(s)	2716
BspDI	ATCGAT	1 cut(s)	3375
BspEI	TCCGGA	1 cut(s)	2781
BspFNI	CGCG	2 cut(s)	134, 1146
BspHI	TCATGA	3 cut(s)	661, 2671, 4900
BspMAI	CTGCAG	2 cut(s)	2154, 3766
BspMI	ACCTGC	1 cut(s)	3199
BspQI	GCTCTTC	2 cut(s)	693, 892
BspT107I	GGYRCC	2 cut(s)	1140, 1843
BspTNI	GGTCTC	4 cut(s)	1607, 4156, 4180, 5231
BsrDI	GCAATG	1 cut(s)	3137
BsrFI	RCCGGY	1 cut(s)	2458
BsrGI	TGTACA	2 cut(s)	2860, 3085
BsrI	ACTGG	8 cut(s)	2087, 2294, 2532, 2558, 2620, 2631, 3281, 5078
BssAI	RCCGGY	1 cut(s)	2458
BssECI	CCNNGG	5 cut(s)	77, 2716, 3518, 3779, 4425
BssNI	GRCGYC	1 cut(s)	955
BssSI	CACGAG	1 cut(s)	1185
BssT1I	CCWWGG	2 cut(s)	2716, 3779
Bst2BI	CACGAG	1 cut(s)	1185
Bst2UI	CCWGG	7 cut(s)	78, 942, 1641, 1995, 3190, 3497, 4427
BstACI	GRCGYC	1 cut(s)	955
BstAPI	GCANNNNNTGC	2 cut(s)	1715, 2582
BstAUI	TGTACA	2 cut(s)	2860, 3085
BstBAI	YACGTR	1 cut(s)	1691
BstDSI	CCRYGG	1 cut(s)	2716
BstENI	CCTNNNNNAGG	2 cut(s)	1614, 1644
BstFNI	CGCG	2 cut(s)	134, 1146
BstH2I	RGCGCY	5 cut(s)	1768, 1953, 2254, 3180, 4280
BstHHI	GCGC	6 cut(s)	1767, 1952, 2253, 2613, 3179, 4279
BstMAI	GTCTC	9 cut(s)	431, 1607, 2999, 3232, 3961, 4156, 4180, 4992, 5231
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	8 cut(s)	1715, 2135, 2345, 2582, 3185, 4276, 4812, 5123
BstNI	CCWGG	7 cut(s)	78, 942, 1641, 1995, 3190, 3497, 4427
BstNSI	RCATGY	8 cut(s)	320, 404, 452, 500, 560, 3188, 4815, 5043
BstSCI	CCNGG	8 cut(s)	76, 940, 1639, 1665, 1993, 3188, 3495, 4425
BstSFI	CTRYAG	5 cut(s)	2150, 2886, 2967, 3762, 4887
BstSLI	GKGCMC	4 cut(s)	1186, 1690, 3120, 3161
BstUI	CGCG	2 cut(s)	134, 1146
BstV1I	GCAGC	4 cut(s)	1063, 1873, 2035, 2335
BstV2I	GAAGAC	1 cut(s)	4080
BstX2I	RGATCY	4 cut(s)	2096, 2146, 4541, 5200
BstXI	CCANNNNNNTGG	3 cut(s)	1262, 3503, 4211
BstYI	RGATCY	4 cut(s)	2096, 2146, 4541, 5200
Bsu15I	ATCGAT	1 cut(s)	3375
BsuI	GTATCC	2 cut(s)	382, 1647
BsuTUI	ATCGAT	1 cut(s)	3375
BtgI	CCRYGG	1 cut(s)	2716
BtrI	CACGTC	1 cut(s)	4078
BtsI	GCAGTG	4 cut(s)	1895, 2024, 2280, 5044
BveI	ACCTGC	1 cut(s)	3199
CaiI	CAGNNNCTG	5 cut(s)	620, 896, 2093, 2289, 4922
CciI	TCATGA	3 cut(s)	661, 2671, 4900
CfoI	GCGC	6 cut(s)	1767, 1952, 2253, 2613, 3179, 4279
Cfr10I	RCCGGY	1 cut(s)	2458
ClaI	ATCGAT	1 cut(s)	3375
CseI	GACGC	2 cut(s)	3214, 4908
CsiI	ACCWGGT	1 cut(s)	940
Csp6I	GTAC	7 cut(s)	1233, 2163, 2861, 3086, 3275, 3552, 5186
CspCI	CAANNNNNGTGG	2 cut(s)	1160, 1195
CviQI	GTAC	7 cut(s)	1233, 2163, 2861, 3086, 3275, 3552, 5186
DraIII	CACNNNGTG	2 cut(s)	1694, 4207
EaeI	YGGCCR	4 cut(s)	2078, 3791, 5024, 5277
EciI	GGCGGA	1 cut(s)	2304
Eco130I	CCWWGG	2 cut(s)	2716, 3779
Eco147I	AGGCCT	2 cut(s)	1524, 3900
Eco24I	GRGCYC	1 cut(s)	3120
Eco31I	GGTCTC	4 cut(s)	1607, 4156, 4180, 5231
Eco32I	GATATC	2 cut(s)	4034, 4906
Eco47I	GGWCC	8 cut(s)	74, 965, 1003, 2041, 2547, 3596, 3755, 3776
Eco47III	AGCGCT	1 cut(s)	3178
Eco57I	CTGAAG	2 cut(s)	873, 2552
Eco72I	CACGTG	1 cut(s)	1691
Eco88I	CYCGRG	2 cut(s)	1926, 3519
EcoNI	CCTNNNNNAGG	2 cut(s)	1614, 1644
EcoO109I	RGGNCCY	3 cut(s)	965, 3596, 3755
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	7 cut(s)	76, 940, 1639, 1993, 3188, 3495, 4425
EcoRV	GATATC	2 cut(s)	4034, 4906
EcoT14I	CCWWGG	2 cut(s)	2716, 3779
EcoT38I	GRGCYC	1 cut(s)	3120
ErhI	CCWWGG	2 cut(s)	2716, 3779
Esp3I	CGTCTC	2 cut(s)	431, 3232
FalI	AAGNNNNNCTT	6 cut(s)	132, 164, 3647, 3679, 3763, 3795
FaqI	GGGAC	9 cut(s)	22, 87, 829, 2300, 2533, 3457, 3741, 4274, 4489
FauI	CCCGC	2 cut(s)	139, 1118
FauNDI	CATATG	1 cut(s)	5196
FbaI	TGATCA	6 cut(s)	1207, 1237, 1267, 3402, 4198, 4465
FblI	GTMKAC	2 cut(s)	2219, 4372
Fnu4HI	GCNGC	9 cut(s)	1077, 1144, 1862, 1991, 2049, 2172, 2349, 4490, 5285
FriOI	GRGCYC	1 cut(s)	3120
Fsp4HI	GCNGC	9 cut(s)	1077, 1144, 1862, 1991, 2049, 2172, 2349, 4490, 5285
FspBI	CTAG	9 cut(s)	606, 1614, 1739, 2952, 3890, 3989, 4251, 4644, 4817
FspI	TGCGCA	1 cut(s)	2612
GlaI	GCGC	6 cut(s)	1766, 1951, 2252, 2612, 3178, 4278
GluI	GCNGC	9 cut(s)	1077, 1144, 1862, 1991, 2049, 2172, 2349, 4490, 5285
GsaI	CCCAGC	3 cut(s)	2814, 4023, 4093
GsuI	CTGGAG	3 cut(s)	3841, 4176, 4983
HaeII	RGCGCY	5 cut(s)	1768, 1953, 2254, 3180, 4280
HapII	CCGG	8 cut(s)	993, 1666, 2459, 2782, 4280, 4611, 4982, 5027
HgaI	GACGC	2 cut(s)	3214, 4908
HhaI	GCGC	6 cut(s)	1767, 1952, 2253, 2613, 3179, 4279
Hin1I	GRCGYC	1 cut(s)	955
Hin6I	GCGC	6 cut(s)	1765, 1950, 2251, 2611, 3177, 4277
HinP1I	GCGC	6 cut(s)	1765, 1950, 2251, 2611, 3177, 4277
HincII	GTYRAC	5 cut(s)	1893, 3577, 4327, 4666, 4744
HindII	GTYRAC	5 cut(s)	1893, 3577, 4327, 4666, 4744
HindIII	AAGCTT	3 cut(s)	2603, 4268, 5130
HpaI	GTTAAC	1 cut(s)	4666
HpaII	CCGG	8 cut(s)	993, 1666, 2459, 2782, 4280, 4611, 4982, 5027
HpyCH4IV	ACGT	5 cut(s)	352, 955, 1414, 1690, 4077
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1715, 2135, 2345, 2582, 3185, 4276, 4812, 5123
HpySE526I	ACGT	5 cut(s)	352, 955, 1414, 1690, 4077
Hsp92I	GRCGYC	1 cut(s)	955
HspAI	GCGC	6 cut(s)	1765, 1950, 2251, 2611, 3177, 4277
Kpn2I	TCCGGA	1 cut(s)	2781
KroI	GCCGGC	1 cut(s)	2458
KroNI	GCCGGC	1 cut(s)	2460
Ksp22I	TGATCA	6 cut(s)	1207, 1237, 1267, 3402, 4198, 4465
KspAI	GTTAAC	1 cut(s)	4666
LguI	GCTCTTC	2 cut(s)	693, 892
LmnI	GCTCC	9 cut(s)	484, 514, 1127, 1478, 2467, 3523, 3860, 4107, 4129
Lsp1109I	GCAGC	4 cut(s)	1063, 1873, 2035, 2335
MabI	ACCWGGT	1 cut(s)	940
MaeI	CTAG	9 cut(s)	606, 1614, 1739, 2952, 3890, 3989, 4251, 4644, 4817
MaeII	ACGT	5 cut(s)	352, 955, 1414, 1690, 4077
MaeIII	GTNAC	6 cut(s)	980, 3308, 3586, 3942, 5035, 5042
MfeI	CAATTG	3 cut(s)	200, 1134, 3828
MflI	RGATCY	4 cut(s)	2096, 2146, 4541, 5200
MhlI	GDGCHC	5 cut(s)	1186, 1690, 2369, 3120, 3161
MlsI	TGGCCA	2 cut(s)	2080, 3793
MluNI	TGGCCA	2 cut(s)	2080, 3793
MlyI	GAGTC	6 cut(s)	4, 1036, 1472, 1770, 3224, 5077
MmeI	TCCRAC	7 cut(s)	604, 1279, 1500, 2274, 2833, 3063, 4098
Mox20I	TGGCCA	2 cut(s)	2080, 3793
MroI	TCCGGA	1 cut(s)	2781
MroNI	GCCGGC	1 cut(s)	2458
MroXI	GAANNNNTTC	3 cut(s)	1250, 1330, 3609
MscI	TGGCCA	2 cut(s)	2080, 3793
MslI	CAYNNNNRTG	9 cut(s)	405, 453, 501, 1102, 2676, 2718, 3130, 4209, 4557
Msp20I	TGGCCA	2 cut(s)	2080, 3793
MspA1I	CMGCKG	3 cut(s)	1113, 2225, 3569
MspI	CCGG	8 cut(s)	993, 1666, 2459, 2782, 4280, 4611, 4982, 5027
MspR9I	CCNGG	8 cut(s)	78, 942, 1641, 1667, 1995, 3190, 3497, 4427
MunI	CAATTG	3 cut(s)	200, 1134, 3828
Mva1269I	GAATGC	1 cut(s)	2239
MvaI	CCWGG	7 cut(s)	78, 942, 1641, 1995, 3190, 3497, 4427
MvnI	CGCG	2 cut(s)	134, 1146
MwoI	GCNNNNNNNGC	8 cut(s)	1715, 2135, 2345, 2582, 3185, 4276, 4812, 5123
NaeI	GCCGGC	1 cut(s)	2460
NciI	CCSGG	1 cut(s)	1667
NcoI	CCATGG	1 cut(s)	2716
NdeI	CATATG	1 cut(s)	5196
NgoMIV	GCCGGC	1 cut(s)	2458
NmuCI	GTSAC	3 cut(s)	3308, 3942, 5042
NsbI	TGCGCA	1 cut(s)	2612
NspI	RCATGY	8 cut(s)	320, 404, 452, 500, 560, 3188, 4815, 5043
OliI	CACNNNNGTG	1 cut(s)	2718
PaeR7I	CTCGAG	1 cut(s)	1926
PagI	TCATGA	3 cut(s)	661, 2671, 4900
PaqCI	CACCTGC	1 cut(s)	3199
PceI	AGGCCT	2 cut(s)	1524, 3900
PciI	ACATGT	1 cut(s)	5039
PciSI	GCTCTTC	2 cut(s)	693, 892
PctI	GAATGC	1 cut(s)	2239
PdiI	GCCGGC	1 cut(s)	2460
PdmI	GAANNNNTTC	3 cut(s)	1250, 1330, 3609
PflMI	CCANNNNNTGG	2 cut(s)	2093, 3397
PfoI	TCCNGGA	1 cut(s)	1639
PkrI	GCNGC	9 cut(s)	1078, 1145, 1863, 1992, 2050, 2173, 2350, 4491, 5286
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	6 cut(s)	4, 1035, 1472, 1770, 3223, 5076
PmaCI	CACGTG	1 cut(s)	1691
PmlI	CACGTG	1 cut(s)	1691
PpsI	GAGTC	6 cut(s)	4, 1035, 1472, 1770, 3223, 5076
Ppu21I	YACGTR	1 cut(s)	1691
PpuMI	RGGWCCY	3 cut(s)	965, 3596, 3755
PscI	ACATGT	1 cut(s)	5039
PshBI	ATTAAT	2 cut(s)	1673, 2939
Psp5II	RGGWCCY	3 cut(s)	965, 3596, 3755
Psp6I	CCWGG	7 cut(s)	76, 940, 1639, 1993, 3188, 3495, 4425
PspCI	CACGTG	1 cut(s)	1691
PspFI	CCCAGC	3 cut(s)	2810, 4019, 4089
PspGI	CCWGG	7 cut(s)	76, 940, 1639, 1993, 3188, 3495, 4425
PspOMI	GGGCCC	1 cut(s)	3116
PspPPI	RGGWCCY	3 cut(s)	965, 3596, 3755
PstI	CTGCAG	2 cut(s)	2154, 3766
PstNI	CAGNNNCTG	5 cut(s)	620, 896, 2093, 2289, 4922
PsuI	RGATCY	4 cut(s)	2096, 2146, 4541, 5200
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	3569
RsaI	GTAC	7 cut(s)	1234, 2164, 2862, 3087, 3276, 3553, 5187
RsaNI	GTAC	7 cut(s)	1233, 2163, 2861, 3086, 3275, 3552, 5186
RseI	CAYNNNNRTG	9 cut(s)	405, 453, 501, 1102, 2676, 2718, 3130, 4209, 4557
SapI	GCTCTTC	2 cut(s)	693, 892
SatI	GCNGC	9 cut(s)	1077, 1144, 1862, 1991, 2049, 2172, 2349, 4490, 5285
ScaI	AGTACT	1 cut(s)	3276
SchI	GAGTC	6 cut(s)	4, 1036, 1472, 1770, 3224, 5077
ScrFI	CCNGG	8 cut(s)	78, 942, 1641, 1667, 1995, 3190, 3497, 4427
SduI	GDGCHC	5 cut(s)	1186, 1690, 2369, 3120, 3161
SexAI	ACCWGGT	1 cut(s)	940
SfcI	CTRYAG	5 cut(s)	2150, 2886, 2967, 3762, 4887
Sfr274I	CTCGAG	1 cut(s)	1926
SinI	GGWCC	8 cut(s)	74, 965, 1003, 2041, 2547, 3596, 3755, 3776
SlaI	CTCGAG	1 cut(s)	1926
SmiMI	CAYNNNNRTG	9 cut(s)	405, 453, 501, 1102, 2676, 2718, 3130, 4209, 4557
SmlI	CTYRAG	6 cut(s)	1926, 2105, 2166, 3980, 4293, 4636
SmoI	CTYRAG	6 cut(s)	1926, 2105, 2166, 3980, 4293, 4636
SseBI	AGGCCT	2 cut(s)	1524, 3900
SspI	AATATT	3 cut(s)	1274, 1818, 2937
SspMI	CTAG	9 cut(s)	606, 1614, 1739, 2952, 3890, 3989, 4251, 4644, 4817
StuI	AGGCCT	2 cut(s)	1524, 3900
StyD4I	CCNGG	8 cut(s)	76, 940, 1639, 1665, 1993, 3188, 3495, 4425
StyI	CCWWGG	2 cut(s)	2716, 3779
TaiI	ACGT	5 cut(s)	355, 958, 1417, 1693, 4080
TaqI	TCGA	9 cut(s)	13, 17, 1852, 1927, 3375, 3814, 4521, 4751, 5235
TaqII	GACCGA	1 cut(s)	2058
TatI	WGTACW	7 cut(s)	1232, 2162, 2860, 3085, 3274, 3551, 5185
TauI	GCSGC	4 cut(s)	1146, 1993, 2174, 4492
TseFI	GTSAC	3 cut(s)	3308, 3942, 5042
TseI	GCWGC	5 cut(s)	1076, 1861, 2048, 2348, 5284
Tsp45I	GTSAC	3 cut(s)	3308, 3942, 5042
TspGWI	ACGGA	4 cut(s)	506, 1717, 2743, 3985
Van91I	CCANNNNNTGG	2 cut(s)	2093, 3397
VneI	GTGCAC	3 cut(s)	1182, 1686, 3157
VpaK11BI	GGWCC	8 cut(s)	74, 965, 1003, 2041, 2547, 3596, 3755, 3776
VspI	ATTAAT	2 cut(s)	1673, 2939
XagI	CCTNNNNNAGG	2 cut(s)	1614, 1644
XceI	RCATGY	8 cut(s)	320, 404, 452, 500, 560, 3188, 4815, 5043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2107
XhoI	CTCGAG	1 cut(s)	1926
XmiI	GTMKAC	2 cut(s)	2219, 4372
XmnI	GAANNNNTTC	3 cut(s)	1250, 1330, 3609
XspI	CTAG	9 cut(s)	606, 1614, 1739, 2952, 3890, 3989, 4251, 4644, 4817
ZraI	GACGTC	1 cut(s)	956
ZrmI	AGTACT	1 cut(s)	3276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.