pycom11g23820

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0008669
Physical Location & Seq
Forward (+)
26834340 .. 26838102
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1083 bp
ATGAAACAAGAGATTTTCTTTTCAAGGAATTTCCCCAAATACTTCACTTTTCCTTCACACACACTCAAACCCACATTCAAAATACACAAAAAAATGGCATTGTCGACAACTCACCTCCTCCTACACATCAAACCCCCTCGAAGTCCTTCCTTATTCCAATCCCAATCCCACCGCGTGTCCTCCTCCTCCCTCCCCATCCTCCGCACAAAATTCCTAACCCCAACCCACCCTCGCCACAGCAATCCCCCCAAACAAACAATGAACAGGCCTCCCGCAGCCAGTGTGCAGAGTGCTGTGTCCCAGGCAATGAGCCTGATCCAGTCGTCGCCTCCGACCTGGCAGTCCTCCGTCCTCAGCAACCTCCTGATCTTCCTGCTGGGTTCTCCAATTCTGGTCTCCGGACTCTCTGCCTCTGGCATTGGAGCTGCTTTCTTGCTCGGTACTCTCACTTGGCGCGCTTTTGGGTCATCTGGGTTTCTCCTGGTGGCCGCATACTTCGTCCTTGGCACGGCAGTGACAAAGGTGAGGATGAAACAAAAGGAGGCTGAAGGGGTAGCCGAGAAGAGGAAAGGAAGGAGAGGCCCTGGCAGTGTCATTGGATCCAGTGCTGCTGGTTGTGTCTGTGCTTTCCTGTCAATACTTGGAGTAGGAGGAAGCGGATATTCTCGGCTTTGGCAACTAGGGTTTGTTGCCAGCTTCTGTACTAAGTTAAGTGATACTGTCTCAAGTGAGATGGGAAAGGCATATGGAAAAACAACGTACTTAGTTACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTATGAGTGTTGAGGGAACCTTTGCTGGACTTTTGGCCGCTATCCTTCTTGCGTTTGTTGGTTGTGCCATGGGTGAGGTAAGTGCACCTGAAGCACTGATATGCGTAATAGCTTCACAAATAGCTAATCTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTAGATGGCTCAACAACGATGCTGTGAACGTCATAAACATATCGATGGGCAGCATTTTGGCAGTCTTGATGCGGCAGGTTTTGCTCCAGAACTGGAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

361

Amino Acids

38.45

Weight (kDa)

10.15

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 123 - 343 5.1e-56 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 1045
AccI GTMKAC 1 cut(s) 104
AccII CGCG 2 cut(s) 174, 456
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 7 cut(s) 172, 202, 273, 489, 657, 843, 1051
AclWI GGATC 3 cut(s) 310, 594, 607
AcoI YGGCCR 2 cut(s) 486, 840
AcsI RAATTY 2 cut(s) 28, 209
AcuI CTGAAG 2 cut(s) 567, 915
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 3 cut(s) 442, 703, 761
AfiI CCNNNNNNNGG 2 cut(s) 508, 564
AgsI TTSAA 4 cut(s) 24, 79, 778, 965
AjnI CCWGG 4 cut(s) 300, 335, 480, 583
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 4 cut(s) 425, 696, 917, 929
AluI AGCT 4 cut(s) 425, 696, 917, 929
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 2 cut(s) 400, 727
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 3 cut(s) 310, 594, 607
AlwNI CAGNNNCTG 1 cut(s) 699
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 4 cut(s) 266, 486, 580, 840
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 5 cut(s) 275, 425, 608, 956, 1029
ApoI RAATTY 2 cut(s) 28, 209
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 2 cut(s) 456, 458
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 4 cut(s) 104, 535, 890, 950
BaeGI GKGCMC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 892
BbvCI CCTCAGC 1 cut(s) 353
BbvI GCAGC 5 cut(s) 287, 412, 595, 943, 1041
BccI CCATC 4 cut(s) 203, 727, 978, 1018
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 4 cut(s) 302, 337, 482, 585
BcoDI GTCTC 2 cut(s) 400, 727
BfaI CTAG 1 cut(s) 680
BfuAI ACCTGC 1 cut(s) 1045
BisI GCNGC 8 cut(s) 276, 426, 489, 609, 843, 957, 1030, 1052
BlsI GCNGC 8 cut(s) 277, 427, 490, 610, 844, 958, 1031, 1053
Bme1390I CCNGG 4 cut(s) 302, 337, 482, 585
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 2 cut(s) 601, 823
BmrFI CCNGG 4 cut(s) 302, 337, 482, 585
BmsI GCATC 2 cut(s) 988, 1038
BpmI CTGGAG 1 cut(s) 1049
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 709
Bsa29I ATCGAT 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 5 cut(s) 300, 502, 583, 788, 873
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 564
Bse1I ACTGG 4 cut(s) 279, 319, 603, 1076
Bse3DI GCAATG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 398
BseBI CCWGG 4 cut(s) 302, 337, 482, 585
BseCI ATCGAT 1 cut(s) 1022
BseDI CCNNGG 5 cut(s) 300, 502, 583, 788, 873
BseGI GGATG 2 cut(s) 195, 534
BseLI CCNNNNNNNGG 2 cut(s) 508, 564
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 4 cut(s) 279, 319, 603, 1076
BsePI GCGCGC 1 cut(s) 454
BseRI GAGGAG 3 cut(s) 107, 172, 175
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 5 cut(s) 287, 412, 595, 943, 1041
BseYI CCCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 174, 456
BshFI GGCC 4 cut(s) 268, 488, 582, 842
BshVI ATCGAT 1 cut(s) 1022
BsiHKAI GWGCWC 1 cut(s) 892
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 508, 564
BsmAI GTCTC 2 cut(s) 400, 727
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 4 cut(s) 268, 488, 582, 842
Bso31I GGTCTC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 892
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 3 cut(s) 315, 366, 599
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 7 cut(s) 172, 202, 273, 489, 657, 843, 1051
BspANI GGCC 4 cut(s) 268, 488, 582, 842
BspCNI CTCAG 1 cut(s) 366
BspDI ATCGAT 1 cut(s) 1022
BspEI TCCGGA 1 cut(s) 398
BspFNI CGCG 2 cut(s) 174, 456
BspLI GGNNCC 2 cut(s) 601, 823
BspMI ACCTGC 1 cut(s) 1045
BspPI GGATC 3 cut(s) 310, 594, 607
BspQI GCTCTTC 1 cut(s) 966
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 4 cut(s) 279, 319, 603, 1076
BssECI CCNNGG 5 cut(s) 300, 502, 583, 788, 873
BssHII GCGCGC 1 cut(s) 454
BssMI GATC 3 cut(s) 315, 366, 599
BssT1I CCWWGG 3 cut(s) 502, 788, 873
Bst2UI CCWGG 4 cut(s) 302, 337, 482, 585
Bst4CI ACNGT 1 cut(s) 721
Bst6I CTCTTC 2 cut(s) 557, 966
BstAPI GCANNNNNTGC 1 cut(s) 1060
BstC8I GCNNGC 2 cut(s) 456, 694
BstDEI CTNAG 3 cut(s) 353, 705, 763
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 2 cut(s) 195, 534
BstFNI CGCG 2 cut(s) 174, 456
BstHHI GCGC 2 cut(s) 456, 458
BstKTI GATC 3 cut(s) 318, 369, 602
BstMAI GTCTC 2 cut(s) 400, 727
BstMBI GATC 3 cut(s) 315, 366, 599
BstMWI GCNNNNNNNGC 2 cut(s) 896, 1060
BstNI CCWGG 4 cut(s) 302, 337, 482, 585
BstSCI CCNGG 4 cut(s) 300, 335, 480, 583
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 2 cut(s) 174, 456
BstV1I GCAGC 5 cut(s) 287, 412, 595, 943, 1041
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
Bsu15I ATCGAT 1 cut(s) 1022
BsuRI GGCC 4 cut(s) 268, 488, 582, 842
BsuTUI ATCGAT 1 cut(s) 1022
BtgI CCRYGG 1 cut(s) 873
BtsCI GGATG 2 cut(s) 195, 534
BtsI GCAGTG 2 cut(s) 519, 595
BtsIMutI CAGTG 5 cut(s) 286, 519, 595, 610, 899
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 2 cut(s) 456, 694
CaiI CAGNNNCTG 1 cut(s) 699
CfoI GCGC 2 cut(s) 456, 458
Cfr13I GGNCC 1 cut(s) 581
ClaI ATCGAT 1 cut(s) 1022
Csp6I GTAC 3 cut(s) 441, 702, 760
CviAII CATG 1 cut(s) 874
CviQI GTAC 3 cut(s) 441, 702, 760
DdeI CTNAG 3 cut(s) 353, 705, 763
DpnI GATC 3 cut(s) 317, 368, 601
DpnII GATC 3 cut(s) 315, 366, 599
DraIII CACNNNGTG 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 2 cut(s) 486, 840
Eam1104I CTCTTC 2 cut(s) 557, 966
EarI CTCTTC 2 cut(s) 557, 966
Eco130I CCWWGG 3 cut(s) 502, 788, 873
Eco147I AGGCCT 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 567, 915
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 4 cut(s) 300, 335, 480, 583
EcoT14I CCWWGG 3 cut(s) 502, 788, 873
ErhI CCWWGG 3 cut(s) 502, 788, 873
FaeI CATG 1 cut(s) 877
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 873
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 1 cut(s) 745
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 8 cut(s) 276, 426, 489, 609, 843, 957, 1030, 1052
FokI GGATG 2 cut(s) 182, 541
Fsp4HI GCNGC 8 cut(s) 276, 426, 489, 609, 843, 957, 1030, 1052
FspBI CTAG 1 cut(s) 680
GlaI GCGC 2 cut(s) 455, 457
GluI GCNGC 8 cut(s) 276, 426, 489, 609, 843, 957, 1030, 1052
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 1049
HaeIII GGCC 4 cut(s) 268, 488, 582, 842
HapII CCGG 1 cut(s) 399
HhaI GCGC 2 cut(s) 456, 458
Hin1II CATG 1 cut(s) 877
Hin6I GCGC 2 cut(s) 454, 456
HinP1I GCGC 2 cut(s) 454, 456
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 402
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 104, 535, 890, 950
Hpy166II GTNNAC 3 cut(s) 105, 890, 1006
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 5 cut(s) 364, 399, 965, 1045, 1066
Hpy8I GTNNAC 3 cut(s) 105, 890, 1006
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 7 cut(s) 63, 156, 542, 567, 772, 860, 968
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4IV ACGT 2 cut(s) 758, 1008
HpyCH4V TGCA 2 cut(s) 286, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 896, 1060
HpyF3I CTNAG 3 cut(s) 353, 705, 763
HpySE526I ACGT 2 cut(s) 758, 1008
Hsp92II CATG 1 cut(s) 877
HspAI GCGC 2 cut(s) 454, 456
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 3 cut(s) 315, 366, 599
LguI GCTCTTC 1 cut(s) 966
LmnI GCTCC 2 cut(s) 422, 1068
Lsp1109I GCAGC 5 cut(s) 287, 412, 595, 943, 1041
LweI GCATC 2 cut(s) 988, 1038
MaeI CTAG 1 cut(s) 680
MaeII ACGT 2 cut(s) 758, 1008
MaeIII GTNAC 2 cut(s) 514, 766
MalI GATC 3 cut(s) 317, 368, 601
MboI GATC 3 cut(s) 315, 366, 599
MboII GAAGA 3 cut(s) 361, 574, 953
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 1 cut(s) 892
MluCI AATT 3 cut(s) 28, 209, 387
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 356
MroI TCCGGA 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 1 cut(s) 710
MslI CAYNNNNRTG 3 cut(s) 512, 904, 1022
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 4 cut(s) 302, 337, 482, 585
MvaI CCWGG 4 cut(s) 302, 337, 482, 585
MvnI CGCG 2 cut(s) 174, 456
MwoI GCNNNNNNNGC 2 cut(s) 896, 1060
NcoI CCATGG 1 cut(s) 873
NdeI CATATG 1 cut(s) 745
NdeII GATC 3 cut(s) 315, 366, 599
NlaIII CATG 1 cut(s) 877
NlaIV GGNNCC 2 cut(s) 601, 823
NmeAIII GCCGAG 2 cut(s) 583, 646
NmuCI GTSAC 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 512
PauI GCGCGC 1 cut(s) 454
PceI AGGCCT 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 966
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 145
PkrI GCNGC 8 cut(s) 277, 427, 490, 610, 844, 958, 1031, 1053
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 4 cut(s) 300, 335, 480, 583
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 4 cut(s) 300, 335, 480, 583
PspN4I GGNNCC 2 cut(s) 601, 823
PspPI GGNCC 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 699
PsuI RGATCY 1 cut(s) 599
PteI GCGCGC 1 cut(s) 454
RsaI GTAC 3 cut(s) 442, 703, 761
RsaNI GTAC 3 cut(s) 441, 702, 760
RseI CAYNNNNRTG 3 cut(s) 512, 904, 1022
SalI GTCGAC 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 966
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 8 cut(s) 276, 426, 489, 609, 843, 957, 1030, 1052
Sau3AI GATC 3 cut(s) 315, 366, 599
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 4 cut(s) 302, 337, 482, 585
SduI GDGCHC 1 cut(s) 892
SfaNI GCATC 2 cut(s) 988, 1038
SmiMI CAYNNNNRTG 3 cut(s) 512, 904, 1022
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 3 cut(s) 28, 209, 387
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 7 cut(s) 172, 202, 273, 489, 657, 843, 1051
SspMI CTAG 1 cut(s) 680
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 4 cut(s) 300, 335, 480, 583
StyI CCWWGG 3 cut(s) 502, 788, 873
TaaI ACNGT 1 cut(s) 721
TaiI ACGT 2 cut(s) 761, 1011
TaqI TCGA 3 cut(s) 104, 139, 1022
TasI AATT 3 cut(s) 28, 209, 387
TatI WGTACW 1 cut(s) 701
TauI GCSGC 3 cut(s) 491, 845, 1054
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 5 cut(s) 286, 519, 595, 610, 906
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 5 cut(s) 275, 425, 608, 956, 1029
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 17, 275, 545
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 5 cut(s) 286, 519, 595, 610, 906
VneI GTGCAC 1 cut(s) 888
XapI RAATTY 2 cut(s) 28, 209
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.