pycom11g24480

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007688
Physical Location & Seq
Reverse (-)
27397672 .. 27399036
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
ATGCCTTTTCCAATGAAAATCCAACCGATCGATTTTCGCACGAGTCCTGAAGACCTGACTCTGTTCGAGCCGGTCAAGCCGGTGGCGGCGAAGTCGCGGCTCAAGCGGCTGTTCGAGCGGCCGTTCACGAACGTATTGAAAAGCTCAGCGGCGACGGAGAAGACCAGCGGAGGAATCGGAATGGAAGAGCTGCATTTCAACAAAGACGGAGGCGGCGGAGGATCGGCCGAGTTCGAGCCGAGCTCCATGTGCTTGACGAAGATGGTTCAGAATTTCATCGAGGAGAGCAACGAGAAGCAATCATCGACTGCGGCGCGGTGCAGCCGGAACCGCTGCAACTGCTTCAACGGAAACGACAGTTCGGAAGACGAATCGGAGCTGTTTGGCGGTTTCGGCGACTCCAACGTGGCGTCCTCTGCCGAATCATGTGAGCTTCTCAAGGGTTTGGTTTCGTGCCAGAGCGTGAGCGAGAGGAACCTGCTAGCCGACACAGCGAAGATTGTTGAGAGAAACAAGGCCTGCTGCAAGCGGAAAGACGACACCTGCAGAACCGTCGTTTCTGATAGTCTGTTAGCTCTCGGATACGACGCGTCGGTCTGCAAATCTCGTTGGGAAAAAGCTCCGTCCTATCCCGCCGGAGAATATGATTACATTGACGTGATCGTCAAAGGAGAGAGACTGCTGATCGACGTCGATTTCAGATCGGAATTCGAGATCGCACGGCCGACGAAGAGCTACAAGGCGACTCTCCAGACGCTTCCGTACATTTTCGTCGGGAAGCACGACCGGCTGTGGGGGATCATCGCGGTGGTGTCGGAGGCGGCGAAGCAGAGCTTGAAGAAGAAAGGGATGCCAGTTCCACCGTGGAGAAAAGCCGAGTACATCAGGGCCAAGTGGCTGTCTCCTCACACTAGAGCCACACCGGCGCCGACCGATTCGACTCAGCCACTGATCGGGTCAGGCGACTCGGGACTGAGTCTGGGCGGGACAAGCTCGGTTGAGGATGGTGAGTTGGGCGACGAGTCGGTGTTTGAGTTGTCGGCGAGTTCCGGTGAGGAAGAGAAGGCGATGGCGGCGGCGAAGGAGTGGAAGCCGCCGGAGCTGAAGCCGAAGAGATCGAGCGGTGACCGGAGTAAAAATCGTGACCGGTTTGGCTTCTGTCATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

391

Amino Acids

42.83

Weight (kDa)

6.23

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 87 - 305 1.7e-74 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
AasI GACNNNNNNGTC 2 cut(s) 593, 662
AatII GACGTC 1 cut(s) 693
Acc36I ACCTGC 2 cut(s) 486, 551
AccB1I GGYRCC 1 cut(s) 925
AccBSI CCGCTC 2 cut(s) 118, 1122
AccII CGCG 4 cut(s) 97, 316, 590, 806
AclWI GGATC 2 cut(s) 229, 806
AcoI YGGCCR 3 cut(s) 119, 225, 722
AcsI RAATTY 2 cut(s) 271, 707
AcuI CTGAAG 2 cut(s) 69, 1124
AcyI GRCGYC 3 cut(s) 410, 690, 926
AfaI GTAC 2 cut(s) 764, 881
AfiI CCNNNNNNNGG 2 cut(s) 793, 953
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 1146
AgsI TTSAA 4 cut(s) 139, 199, 346, 838
AjiI CACGTC 1 cut(s) 658
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 670, 906
AlwI GGATC 2 cut(s) 229, 806
AlwNI CAGNNNCTG 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 967
AoxI GGCC 5 cut(s) 119, 225, 516, 722, 888
ApeKI GCWGC 4 cut(s) 190, 321, 333, 522
ApoI RAATTY 2 cut(s) 271, 707
AsiGI ACCGGT 1 cut(s) 1146
AspLEI GCGC 2 cut(s) 316, 928
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 3 cut(s) 1019, 1064, 1136
AsuNHI GCTAGC 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 967
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 57, 167, 372
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 177, 320, 333, 509
BccI CCATC 3 cut(s) 256, 998, 1063
BceAI ACGGC 2 cut(s) 106, 737
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciVI GTATCC 1 cut(s) 575
BcoDI GTCTC 2 cut(s) 670, 906
BfaI CTAG 2 cut(s) 482, 912
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 2 cut(s) 486, 551
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 967
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 3 cut(s) 329, 476, 927
BmsI GCATC 1 cut(s) 840
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 3 cut(s) 57, 167, 372
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 734
Bpu1102I GCTNAGC 1 cut(s) 145
BpuEI CTTGAG 2 cut(s) 86, 422
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 3 cut(s) 410, 690, 926
BsaJI CCNNGG 1 cut(s) 863
BsaWI WCCGGW 3 cut(s) 1049, 1128, 1146
Bsc4I CCNNNNNNNGG 2 cut(s) 793, 953
Bse118I RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
Bse1I ACTGG 1 cut(s) 854
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 863
BseGI GGATG 2 cut(s) 855, 1009
BseLI CCNNNNNNNGG 2 cut(s) 793, 953
BseMII CTCAG 3 cut(s) 159, 956, 965
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 2 cut(s) 296, 894
BseX3I CGGCCG 3 cut(s) 119, 225, 722
BseXI GCAGC 4 cut(s) 177, 320, 333, 509
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 4 cut(s) 97, 316, 590, 806
Bsh1285I CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BshFI GGCC 5 cut(s) 121, 227, 518, 724, 890
BshNI GGYRCC 1 cut(s) 925
BshTI ACCGGT 1 cut(s) 1146
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 967
BslFI GGGAC 2 cut(s) 984, 1000
BslI CCNNNNNNNGG 2 cut(s) 793, 953
BsmAI GTCTC 2 cut(s) 670, 906
BsmFI GGGAC 2 cut(s) 984, 1000
BsnI GGCC 5 cut(s) 121, 227, 518, 724, 890
BsoBI CYCGRG 1 cut(s) 967
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
Bsp1720I GCTNAGC 1 cut(s) 145
BspANI GGCC 5 cut(s) 121, 227, 518, 724, 890
BspCNI CTCAG 3 cut(s) 158, 955, 966
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 4 cut(s) 97, 316, 590, 806
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 329, 476, 927
BspMAI CTGCAG 1 cut(s) 548
BspMI ACCTGC 2 cut(s) 486, 551
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 229, 806
BspQI GCTCTTC 2 cut(s) 180, 725
BspT107I GGYRCC 1 cut(s) 925
BsrBI CCGCTC 2 cut(s) 118, 1122
BsrFI RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
BsrI ACTGG 1 cut(s) 854
BssAI RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
BssECI CCNNGG 1 cut(s) 863
BssMI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
BssNI GRCGYC 3 cut(s) 410, 690, 926
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 359, 553, 864
Bst6I CTCTTC 4 cut(s) 180, 725, 1053, 1106
BstACI GRCGYC 3 cut(s) 410, 690, 926
BstC8I GCNNGC 3 cut(s) 483, 520, 527
BstDEI CTNAG 3 cut(s) 145, 942, 974
BstDSI CCRYGG 1 cut(s) 863
BstEII GGTNACC 1 cut(s) 1124
BstF5I GGATG 2 cut(s) 855, 1009
BstFNI CGCG 4 cut(s) 97, 316, 590, 806
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 2 cut(s) 316, 928
BstKTI GATC 9 cut(s) 30, 224, 663, 687, 704, 717, 801, 954, 1118
BstMAI GTCTC 2 cut(s) 670, 906
BstMBI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
BstMCI CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BstPI GGTNACC 1 cut(s) 1124
BstSFI CTRYAG 1 cut(s) 544
BstUI CGCG 4 cut(s) 97, 316, 590, 806
BstV1I GCAGC 4 cut(s) 177, 320, 333, 509
BstV2I GAAGAC 3 cut(s) 57, 167, 372
BstZI CGGCCG 3 cut(s) 119, 225, 722
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 5 cut(s) 121, 227, 518, 724, 890
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 863
BtgZI GCGATG 2 cut(s) 787, 1082
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 2 cut(s) 855, 1009
BtsIMutI CAGTG 1 cut(s) 947
BveI ACCTGC 2 cut(s) 486, 551
Cac8I GCNNGC 3 cut(s) 483, 520, 527
CaiI CAGNNNCTG 1 cut(s) 949
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 2 cut(s) 316, 928
Cfr10I RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
Cfr13I GGNCC 1 cut(s) 888
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 4 cut(s) 399, 579, 596, 763
Csp6I GTAC 2 cut(s) 763, 880
CspAI ACCGGT 1 cut(s) 1146
CviAII CATG 3 cut(s) 247, 426, 1163
CviQI GTAC 2 cut(s) 763, 880
DdeI CTNAG 3 cut(s) 145, 942, 974
DinI GGCGCC 1 cut(s) 927
DpnI GATC 9 cut(s) 29, 223, 662, 686, 703, 716, 800, 953, 1117
DpnII GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
DrdI GACNNNNNNGTC 2 cut(s) 593, 662
DseDI GACNNNNNNGTC 2 cut(s) 593, 662
EaeI YGGCCR 3 cut(s) 119, 225, 722
EagI CGGCCG 3 cut(s) 119, 225, 722
Eam1104I CTCTTC 4 cut(s) 180, 725, 1053, 1106
EarI CTCTTC 4 cut(s) 180, 725, 1053, 1106
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 243
EclXI CGGCCG 3 cut(s) 119, 225, 722
Eco147I AGGCCT 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 245
Eco52I CGGCCG 3 cut(s) 119, 225, 722
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 69, 1124
Eco88I CYCGRG 1 cut(s) 967
Eco91I GGTNACC 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 243
EcoO65I GGTNACC 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 927
EheI GGCGCC 1 cut(s) 927
FaeI CATG 3 cut(s) 250, 429, 1166
FaiI YATR 5 cut(s) 248, 427, 645, 1164, 1171
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 2 cut(s) 984, 1000
FatI CATG 3 cut(s) 246, 425, 1162
FauI CCCGC 2 cut(s) 640, 977
FokI GGATG 2 cut(s) 862, 1016
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 2 cut(s) 482, 912
GlaI GCGC 2 cut(s) 315, 927
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 5 cut(s) 121, 227, 518, 724, 890
HgaI GACGC 4 cut(s) 399, 579, 596, 763
HhaI GCGC 2 cut(s) 316, 928
Hin1I GRCGYC 3 cut(s) 410, 690, 926
Hin1II CATG 3 cut(s) 250, 429, 1166
Hin6I GCGC 2 cut(s) 314, 926
HinP1I GCGC 2 cut(s) 314, 926
HphI GGTGA 3 cut(s) 1019, 1064, 1136
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 9 cut(s) 179, 270, 364, 376, 562, 581, 701, 706, 817
Hpy188III TCNNGA 8 cut(s) 47, 127, 712, 751, 775, 969, 1142, 1163
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 9 cut(s) 157, 557, 590, 595, 692, 695, 730, 776, 1022
HpyAV CCTTC 2 cut(s) 1057, 1075
HpyCH4III ACNGT 3 cut(s) 359, 553, 864
HpyCH4IV ACGT 4 cut(s) 132, 405, 657, 690
HpyCH4V TGCA 6 cut(s) 193, 321, 336, 525, 546, 600
HpyF3I CTNAG 3 cut(s) 145, 942, 974
HpySE526I ACGT 4 cut(s) 132, 405, 657, 690
Hsp92I GRCGYC 3 cut(s) 410, 690, 926
Hsp92II CATG 3 cut(s) 250, 429, 1166
HspAI GCGC 2 cut(s) 314, 926
KasI GGCGCC 1 cut(s) 925
Kzo9I GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
LguI GCTCTTC 2 cut(s) 180, 725
LmnI GCTCC 4 cut(s) 248, 376, 625, 1099
Lsp1109I GCAGC 4 cut(s) 177, 320, 333, 509
LweI GCATC 1 cut(s) 840
MaeI CTAG 2 cut(s) 482, 912
MaeII ACGT 4 cut(s) 132, 405, 657, 690
MaeIII GTNAC 2 cut(s) 1124, 1142
MalI GATC 9 cut(s) 29, 223, 662, 686, 703, 716, 800, 953, 1117
MbiI CCGCTC 2 cut(s) 118, 1122
MboI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 271, 707
MluI ACGCGT 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 926
MlyI GAGTC 8 cut(s) 52, 52, 392, 739, 934, 959, 985, 1031
MmeI TCCRAC 3 cut(s) 46, 426, 795
MslI CAYNNNNRTG 2 cut(s) 656, 806
MspA1I CMGCKG 3 cut(s) 149, 168, 333
MvnI CGCG 4 cut(s) 97, 316, 590, 806
NarI GGCGCC 1 cut(s) 926
NdeII GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 3 cut(s) 250, 429, 1166
NlaIV GGNNCC 3 cut(s) 329, 476, 927
NmeAIII GCCGAG 3 cut(s) 253, 264, 901
NmuCI GTSAC 2 cut(s) 1124, 1142
PagI TCATGA 1 cut(s) 1162
PaqCI CACCTGC 1 cut(s) 551
PceI AGGCCT 1 cut(s) 518
PciSI GCTCTTC 2 cut(s) 180, 725
PcsI WCGNNNNNNNCGW 3 cut(s) 780, 821, 960
PfeI GAWTC 4 cut(s) 174, 371, 422, 935
PflFI GACNNNGTC 1 cut(s) 975
PinAI ACCGGT 1 cut(s) 1146
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 8 cut(s) 51, 52, 392, 739, 934, 959, 984, 1030
PluTI GGCGCC 1 cut(s) 929
PpsI GAGTC 8 cut(s) 51, 52, 392, 739, 934, 959, 984, 1030
Psp124BI GAGCTC 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 1124
PspN4I GGNNCC 3 cut(s) 329, 476, 927
PspPI GGNCC 1 cut(s) 888
PstI CTGCAG 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 949
PsyI GACNNNGTC 1 cut(s) 975
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 764, 881
RsaNI GTAC 2 cut(s) 763, 880
RseI CAYNNNNRTG 2 cut(s) 656, 806
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 2 cut(s) 180, 725
Sau3AI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
Sau96I GGNCC 1 cut(s) 888
SchI GAGTC 8 cut(s) 52, 52, 392, 739, 934, 959, 985, 1031
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 840
SfcI CTRYAG 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 927
SgrAI CRCCGGYG 1 cut(s) 922
SmiMI CAYNNNNRTG 2 cut(s) 656, 806
SmlI CTYRAG 2 cut(s) 101, 437
SmoI CTYRAG 2 cut(s) 101, 437
Sse9I AATT 2 cut(s) 271, 707
SseBI AGGCCT 1 cut(s) 518
SspDI GGCGCC 1 cut(s) 925
SspMI CTAG 2 cut(s) 482, 912
SstI GAGCTC 1 cut(s) 245
StuI AGGCCT 1 cut(s) 518
TaaI ACNGT 3 cut(s) 359, 553, 864
TaiI ACGT 4 cut(s) 135, 408, 660, 693
TaqII GACCGA 2 cut(s) 583, 947
TasI AATT 2 cut(s) 271, 707
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 4 cut(s) 174, 371, 422, 935
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 2 cut(s) 1124, 1142
TseI GCWGC 4 cut(s) 190, 321, 333, 522
Tsp45I GTSAC 2 cut(s) 1124, 1142
TspDTI ATGAA 2 cut(s) 29, 265
TspGWI ACGGA 5 cut(s) 170, 222, 363, 612, 750
TspRI CASTG 1 cut(s) 954
Tth111I GACNNNGTC 1 cut(s) 975
XapI RAATTY 2 cut(s) 271, 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XspI CTAG 2 cut(s) 482, 912
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.