pycom11g25260

cyclin-P3-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009918
Physical Location & Seq
Reverse (-)
28079740 .. 28080132
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGCTAGCAGCGAAATTTATGGATGACGCATTCTTCAACAACGCATACTACGCAAAAGTGGGAGGAGTGAGCACGGCGGAGTTGAATAGGTTGGAAATGAAGTTCTTGTTTACTATAGATTTCAGACTGCAAGTTACTCTAGAGACATTCACAAAATATTGCTCTCAACTGGAAAAAGAAGCTGCAGGAGTCCAGATCGAACGCTCAATCCAAGCTTGCGGGATCAAAGAGAATTGGTCGAAGTCAAAAAACGAAGATTCAACTTACGCTCGCACAGTTGCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

96

Amino Acids

10.85

Weight (kDa)

7.72

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 2 - 43 7.4e-15 Cyclin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 219
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 14
AgsI TTSAA 3 cut(s) 37, 85, 261
AloI GAACNNNNNNTCC 4 cut(s) 86, 118, 192, 224
AluBI AGCT 2 cut(s) 182, 215
AluI AGCT 2 cut(s) 182, 215
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 8, 182
ApoI RAATTY 1 cut(s) 14
AsuNHI GCTAGC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 20, 169
BceAI ACGGC 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 5, 140
BfmI CTRYAG 2 cut(s) 114, 183
BisI GCNGC 2 cut(s) 9, 183
BlsI GCNGC 2 cut(s) 10, 184
BmtI GCTAGC 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 20, 169
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 195, 222
BspACI CCGC 2 cut(s) 77, 219
BspMAI CTGCAG 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 174
BssMI GATC 2 cut(s) 195, 222
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 3 cut(s) 6, 217, 271
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 2 cut(s) 198, 225
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 195, 222
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 2 cut(s) 114, 183
BstV1I GCAGC 2 cut(s) 20, 169
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 6, 217, 271
CseI GACGC 1 cut(s) 35
CviJI RGCY 2 cut(s) 182, 215
CviKI_1 RGCY 2 cut(s) 182, 215
DpnI GATC 2 cut(s) 197, 224
DpnII GATC 2 cut(s) 195, 222
EciI GGCGGA 1 cut(s) 92
FaiI YATR 3 cut(s) 20, 46, 116
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 9, 183
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 9, 183
FspBI CTAG 2 cut(s) 5, 140
GluI GCNGC 2 cut(s) 9, 183
HgaI GACGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 189, 257
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 140, 193
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 130, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Kzo9I GATC 2 cut(s) 195, 222
LpnPI CCDG 3 cut(s) 155, 171, 206
Lsp1109I GCAGC 2 cut(s) 20, 169
MaeI CTAG 2 cut(s) 5, 140
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 197, 224
MboI GATC 2 cut(s) 195, 222
MboII GAAGA 2 cut(s) 25, 266
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 14, 232
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 195, 222
NheI GCTAGC 1 cut(s) 4
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 10, 184
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 187
SatI GCNGC 2 cut(s) 9, 183
Sau3AI GATC 2 cut(s) 195, 222
SchI GAGTC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 74
SetI ASST 3 cut(s) 92, 184, 217
SfcI CTRYAG 2 cut(s) 114, 183
Sse9I AATT 2 cut(s) 14, 232
SsiI CCGC 2 cut(s) 77, 219
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 5, 140
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 198, 239
TasI AATT 2 cut(s) 14, 232
TfiI GAWTC 1 cut(s) 257
TseI GCWGC 2 cut(s) 8, 182
TspDTI ATGAA 1 cut(s) 113
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 139
XspI CTAG 2 cut(s) 5, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.