Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

29134995 .. 29138078

Gene Structure 3084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCACAAGTTAGTGGGTTTCTTGGTGGAGAGAGAGACTATGCGAACTTAAAAGGGGACACAGGGCCGCTGGTCTATCCTGCTGGTTACCTGTACTTTTATTCTGCTATTCAGTATGTTACAGGAGGCCAAGTTTATCCAGCTCAGATTTTGTTCGGGATTTTGTACATTGTAAACTTGGGGATCATTTTGTTCATCTATGGGAAGACTGATGTGGTTCCATGGTGGGCTTTTACCTTGCTTTGTCTATCGAAAAGGGTGCATTCGATTTTTGTGCTTCGTCTTTTTAATGACTGTTTGGCCATGATGCTCTTGTATGCTTCGTTGGCTGCACTTCTTTACCAAAGATGGCATCTTGGACTGATCATTTTCAGTGGAGCTGTTTCAATAAAGATGAATGTGCTTCTCTATGCTCCACCTCTACTACTCCTCATGTTAAAGGCTATGAGTATCAGTGGAGTGATATCAGCTTTAGCTGGTGCAGTGTTACTACAGATACTGTTGGGGATGCCTTTCATCATGTCTCATCCATTTGCATACATCTCAAGAGCCTTTAATCTCGGTCGAGTCTTTATCCACTTCTGGTCTGTTAATTTCAAGTTTGTTCCTGAGCCAATATTTGTATCGAAGGCATTTGCAATCTCTTTGCTGATTGCTCACCTTGGTTTGCTCACAGCTTTTGCTCATTATAGATGGTGCATGCATGAAGGCGGACTCTTCAAATTTTTGTATTCTAGAATCGATCCTTTAAAACTCAAATTTGCTCTGACAAGTTCATTCCCTTTGAAGAAGTCCTCTAATAGCCATTCATCCACCAGAGTTCTTAGGAAAGAATATATTGTGACTACTATGTTTGTCGGGAATTTCATCGGCATTGTATGTGCTCGATCATTGCATTATCAGTTCTACTCTTGGTATTTCCATAGCTTACCTTATCTATTGTGGAAAACGCCTTTCCCCACAGTACTGCGTGTAATGTTGTTTATTGGGGTGGAGTTTTGCTGGAACGTCTTTCCTTCTAGCATGTACTCGTCGGCAATGCTTCTTTTTCTCCACCTAGTAATACTGGTCGGTCTTTGGTCCGCCCCACCTGAATATCCTTATGTGGACGACAAAGCATCGACTGAAAACAAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

381

Amino Acids

43.16

Weight (kDa)

9.48

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG3	PF05208	1 - 345	1.9e-121	ALG3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	68, 711, 1083
AclWI	GGATC	2 cut(s)	191, 737
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	722, 758, 862
AfaI	GTAC	4 cut(s)	95, 167, 966, 1028
AgsI	TTSAA	4 cut(s)	387, 598, 721, 787
AluBI	AGCT	6 cut(s)	143, 380, 470, 476, 677, 927
AluI	AGCT	6 cut(s)	143, 380, 470, 476, 677, 927
Alw21I	GWGCWC	1 cut(s)	886
Alw26I	GTCTC	2 cut(s)	30, 528
AlwI	GGATC	2 cut(s)	191, 737
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	65, 127, 300
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	3 cut(s)	722, 758, 862
AspS9I	GGNCC	2 cut(s)	65, 1080
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	1080
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	886
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	342, 687
BcgI	CGANNNNNNTGC	4 cut(s)	241, 256, 275, 290
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	30, 528
BfaI	CTAG	3 cut(s)	735, 1020, 1058
BfmI	CTRYAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	68, 330
BlsI	GCNGC	2 cut(s)	69, 331
BmcAI	AGTACT	1 cut(s)	966
Bme18I	GGWCC	1 cut(s)	1080
BmgT120I	GGNCC	2 cut(s)	65, 1080
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	4 cut(s)	297, 361, 498, 1127
BpiI	GAAGAC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	529
Bsa29I	ATCGAT	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	221, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	1071
Bse3DI	GCAATG	2 cut(s)	890, 1044
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	221, 661
BseGI	GGATG	3 cut(s)	513, 526, 809
BseMI	GCAATG	2 cut(s)	890, 1044
BseMII	CTCAG	2 cut(s)	158, 600
BseNI	ACTGG	1 cut(s)	1071
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	2 cut(s)	315, 501
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	3 cut(s)	67, 129, 302
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	886
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	30, 528
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	67, 129, 302
Bsp1286I	GDGCHC	1 cut(s)	886
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	183, 363, 742, 887
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	3 cut(s)	68, 711, 1083
BspANI	GGCC	3 cut(s)	67, 129, 302
BspCNI	CTCAG	2 cut(s)	157, 601
BspDI	ATCGAT	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	191, 737
BsrDI	GCAATG	2 cut(s)	890, 1044
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	1071
BssECI	CCNNGG	2 cut(s)	221, 661
BssMI	GATC	4 cut(s)	183, 363, 742, 887
BssT1I	CCWWGG	2 cut(s)	221, 661
Bst4CI	ACNGT	3 cut(s)	296, 501, 964
Bst6I	CTCTTC	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	3 cut(s)	144, 609, 824
BstDSI	CCRYGG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	513, 526, 809
BstKTI	GATC	4 cut(s)	186, 366, 745, 890
BstMAI	GTCTC	2 cut(s)	30, 528
BstMBI	GATC	4 cut(s)	183, 363, 742, 887
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	703, 1027
BstPI	GGTNACC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	67, 129, 302
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	513, 526, 809
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	379, 460, 489
Cac8I	GCNNGC	1 cut(s)	701
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	65, 1080
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	4 cut(s)	94, 166, 965, 1027
CviAII	CATG	7 cut(s)	222, 304, 433, 520, 700, 704, 1024
CviQI	GTAC	4 cut(s)	94, 166, 965, 1027
DdeI	CTNAG	3 cut(s)	144, 609, 824
DpnI	GATC	4 cut(s)	185, 365, 744, 889
DpnII	GATC	4 cut(s)	183, 363, 742, 887
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
EciI	GGCGGA	2 cut(s)	726, 1072
Eco130I	CCWWGG	2 cut(s)	221, 661
Eco32I	GATATC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	1080
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	221, 661
EcoT22I	ATGCAT	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	221, 661
FaeI	CATG	7 cut(s)	225, 307, 436, 523, 703, 707, 1027
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	7 cut(s)	221, 303, 432, 519, 699, 703, 1023
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	68, 330
FokI	GGATG	3 cut(s)	513, 520, 796
Fsp4HI	GCNGC	2 cut(s)	68, 330
FspBI	CTAG	3 cut(s)	735, 1020, 1058
GluI	GCNGC	2 cut(s)	68, 330
HaeIII	GGCC	3 cut(s)	67, 129, 302
Hin1II	CATG	7 cut(s)	225, 307, 436, 523, 703, 707, 1027
HinfI	GANTC	3 cut(s)	567, 714, 738
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	2 cut(s)	175, 1108
Hpy188I	TCNGA	2 cut(s)	147, 768
Hpy188III	TCNNGA	5 cut(s)	157, 546, 608, 735, 859
Hpy8I	GTNNAC	2 cut(s)	175, 1108
Hpy99I	CGWCG	1 cut(s)	1036
HpyAV	CCTTC	3 cut(s)	622, 701, 1026
HpyCH4III	ACNGT	3 cut(s)	296, 501, 964
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	8 cut(s)	262, 332, 482, 536, 638, 699, 703, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	3 cut(s)	144, 609, 824
HpySE526I	ACGT	1 cut(s)	1008
Hsp92II	CATG	7 cut(s)	225, 307, 436, 523, 703, 707, 1027
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	183, 363, 742, 887
LmnI	GCTCC	2 cut(s)	377, 418
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	4 cut(s)	297, 361, 498, 1127
MaeI	CTAG	3 cut(s)	735, 1020, 1058
MaeII	ACGT	1 cut(s)	1008
MaeIII	GTNAC	5 cut(s)	3, 86, 118, 486, 841
MalI	GATC	4 cut(s)	185, 365, 744, 889
MboI	GATC	4 cut(s)	183, 363, 742, 887
MboII	GAAGA	3 cut(s)	217, 709, 799
MhlI	GDGCHC	1 cut(s)	886
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	4 cut(s)	592, 722, 758, 862
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	576, 708
MnlI	CCTC	4 cut(s)	119, 429, 440, 805
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	6 cut(s)	50, 288, 437, 555, 591, 749
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	183, 363, 742, 887
NlaIII	CATG	7 cut(s)	225, 307, 436, 523, 703, 707, 1027
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	3, 841
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	2 cut(s)	703, 1027
PaeI	GCATGC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	738
PkrI	GCNGC	2 cut(s)	69, 331
PleI	GAGTC	2 cut(s)	575, 708
PpsI	GAGTC	2 cut(s)	575, 708
PspEI	GGTNACC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	65, 1080
PstNI	CAGNNNCTG	1 cut(s)	499
RsaI	GTAC	4 cut(s)	95, 167, 966, 1028
RsaNI	GTAC	4 cut(s)	94, 166, 965, 1027
SaqAI	TTAA	6 cut(s)	50, 288, 437, 555, 591, 749
SatI	GCNGC	2 cut(s)	68, 330
Sau3AI	GATC	4 cut(s)	183, 363, 742, 887
Sau96I	GGNCC	2 cut(s)	65, 1080
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	2 cut(s)	576, 708
SduI	GDGCHC	1 cut(s)	886
SfaNI	GCATC	4 cut(s)	297, 361, 498, 1127
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	1080
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	4 cut(s)	592, 722, 758, 862
SsiI	CCGC	3 cut(s)	68, 711, 1083
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	3 cut(s)	735, 1020, 1058
StyI	CCWWGG	2 cut(s)	221, 661
TaaI	ACNGT	3 cut(s)	296, 501, 964
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	7 cut(s)	251, 266, 565, 626, 741, 886, 1121
TaqII	GACCGA	2 cut(s)	551, 1061
TasI	AATT	4 cut(s)	592, 722, 758, 862
TatI	WGTACW	4 cut(s)	93, 165, 964, 1026
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	738
Tru1I	TTAA	6 cut(s)	50, 288, 437, 555, 591, 749
Tru9I	TTAA	6 cut(s)	50, 288, 437, 555, 591, 749
TscAI	CASTG	3 cut(s)	379, 460, 489
TseFI	GTSAC	2 cut(s)	3, 841
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	3, 841
TspDTI	ATGAA	7 cut(s)	184, 410, 505, 720, 765, 798, 856
TspRI	CASTG	3 cut(s)	379, 460, 489
VpaK11BI	GGWCC	1 cut(s)	1080
XapI	RAATTY	3 cut(s)	722, 758, 862
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	2 cut(s)	703, 1027
XspI	CTAG	3 cut(s)	735, 1020, 1058
ZrmI	AGTACT	1 cut(s)	966
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.