pycom11g27640
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29840977 .. 29844423
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1143 bp
ATGGGGAGGGCGCCGTGCTGTGAGAAAGTTGGTCTCAAGAAGGGAAGGTGGACTGCGGACGAGGATGAAATCTTACTCAGTTATATCCAGGCCAATGGGGAAGGCTCCTGGAGGTCTTTACCCAAGAATGCTGGGTTGCTGAGGTGTGGTAAGAGTTGCAGATTGAGATGGATAAACTATCTGAGAGCTGACTTAAAGAGAGGAAATATTTCTTCTCAGGAGGAAGATGTCATCATAAAATTGCATGCTTCTTTGGGTAATAGGTGGTCTTTGATAGCGAGTCAATTACCAGGAAGAACCGATAATGAAATAAAGAACTACTGGAATTCTCACTTGAGCAGGAAAATTGACACCTTCAGGAGGCACACCACCACAATCGCCATTACTACTGAAATCAGCACCAGTTCCCTACCAGCTGGTCATGAAGTTTCGGCAGCTATGGAATTAGGTCCTCCCCCTCCTAAAAGAAGACGTGGCAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAACCTACTTGACCACCAAACCCAAAGGCCTCGAGGCCCCGCTGAGCCAGAGCCACCACAAAGACGTTGATGTTTCTGCTGATGCTGATGATGATCGTTTAAATAATGTCCACAAGGCAACTTCCTTGCCTACTGAAAATAATAATAAAACCGTGGACACCATGCAAGACGATTACGTGCTACTAATTGAGGCCCCGGACCAGCAGCAGGAAACTGGAGGTGGAGGAATATCAATGATGGCAACGGTCATTGATCATCAGAAAGAAAGTGATGGCGGAAAACTAATTTTAGGACCACATCCACTTGTACACGACGATGGTGATATGAATGAATCTGTCGGCATTGATGGAGGGTTGTTGGGGTTTACTGACTACTTGATGGACGATATTAATGAGGACGAGATACTGGATCCAAATGGTGTTTTGGCTTTAAGTGCAAGTGAAATAAACATTCATCAAGATGCTGATCATTTTACGGACGCGGATCATCATCAGGACACAGAATTACCATCGTCATGTGACCAATTAGTCATGTGTCCAAATAAAATTATGATGACAACGACGACTACTACTACTACGGCAGCCAGTGATGATCGATCACGATCAGGAGCAAGAGAGCAGAAGCTGCGGTGGTAA

Protein Analysis

381

Amino Acids

42.12

Weight (kDa)

5.7

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.9e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 5.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
AbsI CCTCGAGG 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 489
AccII CGCG 1 cut(s) 989
AciI CCGC 5 cut(s) 56, 548, 783, 989, 1135
AclWI GGATC 3 cut(s) 911, 924, 999
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 340
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 816
AfiI CCNNNNNNNGG 3 cut(s) 360, 489, 715
AjiI CACGTC 1 cut(s) 473
AjnI CCWGG 3 cut(s) 87, 107, 289
AluBI AGCT 4 cut(s) 188, 416, 437, 1132
AluI AGCT 4 cut(s) 188, 416, 437, 1132
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 3 cut(s) 911, 924, 999
AlwNI CAGNNNCTG 2 cut(s) 489, 1132
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 5 cut(s) 90, 492, 535, 543, 699
ApeKI GCWGC 4 cut(s) 434, 712, 1088, 1132
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 839
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 3 cut(s) 449, 706, 800
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 4 cut(s) 446, 724, 1100, 1119
BccI CCATC 7 cut(s) 162, 739, 773, 818, 848, 880, 1024
BceAI ACGGC 1 cut(s) 1101
BciT130I CCWGG 3 cut(s) 89, 109, 291
BclI TGATCA 2 cut(s) 760, 973
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 4 cut(s) 435, 713, 1089, 1133
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 4 cut(s) 436, 714, 1090, 1134
Bme1390I CCNGG 4 cut(s) 89, 109, 291, 704
Bme18I GGWCC 3 cut(s) 449, 706, 800
BmeT110I CYCGRG 1 cut(s) 539
BmgBI CACGTC 1 cut(s) 473
BmgT120I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
BmiI GGNNCC 5 cut(s) 12, 106, 546, 702, 918
BmrFI CCNGG 4 cut(s) 89, 109, 291, 704
BmsI GCATC 2 cut(s) 580, 958
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 2 cut(s) 130, 744
Bpu10I CCTNAGC 1 cut(s) 140
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 20, 355
BpuMI CCSGG 1 cut(s) 704
Bsa29I ATCGAT 1 cut(s) 1102
BsaAI YACGTR 1 cut(s) 685
BsaBI GATNNNNATC 4 cut(s) 600, 972, 996, 1108
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 660, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 489, 715
Bse1I ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
Bse8I GATNNNNATC 4 cut(s) 600, 972, 996, 1108
BseBI CCWGG 3 cut(s) 89, 109, 291
BseCI ATCGAT 1 cut(s) 1102
BseDI CCNNGG 2 cut(s) 660, 702
BseGI GGATG 2 cut(s) 70, 805
BseJI GATNNNNATC 4 cut(s) 600, 972, 996, 1108
BseLI CCNNNNNNNGG 3 cut(s) 360, 489, 715
BseMII CTCAG 5 cut(s) 91, 131, 173, 230, 542
BseNI ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
BseXI GCAGC 4 cut(s) 446, 724, 1100, 1119
BseYI CCCAGC 2 cut(s) 131, 489
Bsh1236I CGCG 1 cut(s) 989
BshFI GGCC 5 cut(s) 92, 494, 537, 545, 701
BshNI GGYRCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 1102
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 1 cut(s) 704
BslI CCNNNNNNNGG 3 cut(s) 360, 489, 715
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 5 cut(s) 92, 494, 537, 545, 701
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 814
Bsp143I GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 5 cut(s) 56, 548, 783, 989, 1135
BspANI GGCC 5 cut(s) 92, 494, 537, 545, 701
BspCNI CTCAG 5 cut(s) 90, 132, 174, 229, 543
BspDI ATCGAT 1 cut(s) 1102
BspFNI CGCG 1 cut(s) 989
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 5 cut(s) 12, 106, 546, 702, 918
BspPI GGATC 3 cut(s) 911, 924, 999
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 814
BsrI ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
BssECI CCNNGG 2 cut(s) 660, 702
BssMI GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 3 cut(s) 89, 109, 291
Bst4CI ACNGT 2 cut(s) 661, 754
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstAUI TGTACA 1 cut(s) 814
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 5 cut(s) 77, 140, 182, 216, 551
BstDSI CCRYGG 1 cut(s) 660
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 70, 805
BstFNI CGCG 1 cut(s) 989
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 8 cut(s) 604, 763, 919, 976, 994, 1102, 1106, 1112
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
BstMWI GCNNNNNNNGC 2 cut(s) 941, 1132
BstNI CCWGG 3 cut(s) 89, 109, 291
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 4 cut(s) 87, 107, 289, 702
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 4 cut(s) 446, 724, 1100, 1119
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 916
Bsu15I ATCGAT 1 cut(s) 1102
BsuRI GGCC 5 cut(s) 92, 494, 537, 545, 701
BsuTUI ATCGAT 1 cut(s) 1102
BtgI CCRYGG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 473
BtsCI GGATG 2 cut(s) 70, 805
BtsIMutI CAGTG 1 cut(s) 1099
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 2 cut(s) 489, 1132
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
ClaI ATCGAT 1 cut(s) 1102
CseI GACGC 1 cut(s) 995
Csp6I GTAC 1 cut(s) 815
CviAII CATG 6 cut(s) 245, 422, 496, 670, 1023, 1039
CviQI GTAC 1 cut(s) 815
DdeI CTNAG 5 cut(s) 77, 140, 182, 216, 551
DinI GGCGCC 1 cut(s) 12
DpnI GATC 8 cut(s) 603, 762, 918, 975, 993, 1101, 1105, 1111
DpnII GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
DraI TTTAAA 1 cut(s) 609
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EciI GGCGGA 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 3 cut(s) 449, 706, 800
Eco57I CTGAAG 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 3 cut(s) 449, 544, 700
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 87, 107, 289
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaeI CATG 6 cut(s) 248, 425, 499, 673, 1026, 1042
FatI CATG 6 cut(s) 244, 421, 495, 669, 1022, 1038
FauI CCCGC 1 cut(s) 555
FbaI TGATCA 2 cut(s) 760, 973
Fnu4HI GCNGC 4 cut(s) 435, 713, 1089, 1133
FokI GGATG 2 cut(s) 77, 792
Fsp4HI GCNGC 4 cut(s) 435, 713, 1089, 1133
GlaI GCGC 1 cut(s) 12
GluI GCNGC 4 cut(s) 435, 713, 1089, 1133
GsaI CCCAGC 2 cut(s) 135, 493
GsuI CTGGAG 2 cut(s) 130, 744
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 5 cut(s) 92, 494, 537, 545, 701
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 995
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 6 cut(s) 248, 425, 499, 673, 1026, 1042
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 2 cut(s) 280, 839
HpaII CCGG 1 cut(s) 704
HphI GGTGA 1 cut(s) 839
Hpy166II GTNNAC 5 cut(s) 51, 619, 664, 817, 873
Hpy188I TCNGA 2 cut(s) 183, 768
Hpy188III TCNNGA 8 cut(s) 37, 218, 358, 422, 965, 1001, 1107, 1113
Hpy8I GTNNAC 5 cut(s) 51, 619, 664, 817, 873
Hpy99I CGWCG 2 cut(s) 824, 1072
HpyAV CCTTC 4 cut(s) 34, 39, 95, 364
HpyCH4III ACNGT 2 cut(s) 661, 754
HpyCH4IV ACGT 3 cut(s) 472, 573, 684
HpyCH4V TGCA 4 cut(s) 159, 244, 673, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 941, 1132
HpyF3I CTNAG 5 cut(s) 77, 140, 182, 216, 551
HpySE526I ACGT 3 cut(s) 472, 573, 684
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 6 cut(s) 248, 425, 499, 673, 1026, 1042
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
Ksp22I TGATCA 2 cut(s) 760, 973
Kzo9I GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
LmnI GCTCC 2 cut(s) 110, 1115
Lsp1109I GCAGC 4 cut(s) 446, 724, 1100, 1119
LweI GCATC 2 cut(s) 580, 958
MaeII ACGT 3 cut(s) 472, 573, 684
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 8 cut(s) 603, 762, 918, 975, 993, 1101, 1105, 1111
MboI GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
MboII GAAGA 6 cut(s) 204, 236, 306, 480, 511, 514
MflI RGATCY 1 cut(s) 916
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 4 cut(s) 194, 608, 897, 938
MslI CAYNNNNRTG 3 cut(s) 822, 966, 1021
MspA1I CMGCKG 2 cut(s) 416, 550
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 4 cut(s) 89, 109, 291, 704
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 89, 109, 291
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 2 cut(s) 941, 1132
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 1 cut(s) 704
NdeII GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
NlaIII CATG 6 cut(s) 248, 425, 499, 673, 1026, 1042
NlaIV GGNNCC 5 cut(s) 12, 106, 546, 702, 918
NmuCI GTSAC 1 cut(s) 1025
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 539
PagI TCATGA 1 cut(s) 421
PceI AGGCCT 1 cut(s) 537
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 839
PflMI CCANNNNNTGG 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 4 cut(s) 436, 714, 1090, 1134
PleI GAGTC 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 3 cut(s) 87, 107, 289
PspFI CCCAGC 2 cut(s) 131, 489
PspGI CCWGG 3 cut(s) 87, 107, 289
PspN4I GGNNCC 5 cut(s) 12, 106, 546, 702, 918
PspPI GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
PspPPI RGGWCCY 1 cut(s) 449
PspXI VCTCGAGB 1 cut(s) 539
PsrI GAACNNNNNNTAC 2 cut(s) 497, 529
PstNI CAGNNNCTG 2 cut(s) 489, 1132
PsuI RGATCY 1 cut(s) 916
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 816
RsaNI GTAC 1 cut(s) 815
RseI CAYNNNNRTG 3 cut(s) 822, 966, 1021
SaqAI TTAA 4 cut(s) 194, 608, 897, 938
SatI GCNGC 4 cut(s) 435, 713, 1089, 1133
Sau3AI GATC 8 cut(s) 601, 760, 916, 973, 991, 1099, 1103, 1109
Sau96I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 4 cut(s) 89, 109, 291, 704
SfaNI GCATC 2 cut(s) 580, 958
SfoI GGCGCC 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 539
SinI GGWCC 3 cut(s) 449, 706, 800
SlaI CTCGAG 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 822, 966, 1021
SmlI CTYRAG 3 cut(s) 35, 334, 539
SmoI CTYRAG 3 cut(s) 35, 334, 539
SphI GCATGC 1 cut(s) 248
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 5 cut(s) 56, 548, 783, 989, 1135
SspDI GGCGCC 1 cut(s) 10
SspI AATATT 1 cut(s) 208
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 87, 107, 289, 702
TaaI ACNGT 2 cut(s) 661, 754
TaiI ACGT 3 cut(s) 475, 576, 687
TaqI TCGA 2 cut(s) 540, 1102
TatI WGTACW 1 cut(s) 814
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 4 cut(s) 194, 608, 897, 938
Tru9I TTAA 4 cut(s) 194, 608, 897, 938
TscAI CASTG 1 cut(s) 1099
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 4 cut(s) 434, 712, 1088, 1132
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 7 cut(s) 81, 321, 438, 512, 848, 852, 950
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 1 cut(s) 1099
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 3 cut(s) 449, 706, 800
VspI ATTAAT 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.