Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008614

Physical Location & Seq

Genomic Coordinates Forward (+)

409352 .. 413726

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATAAATCTGTAATATTGTTGTATATCGCGGCCTTGGCAGCTTCGTTTCGATTAGTTACTTCGTCTTCTGCTCTCTGCCCTCACGAGTCCGATTTGTTCCGTTACAGCCTTCAATCTCAATGCCCCATCTCGATCTCCCCCCACCCACCCCTCAAGGTGGATGGAAACTACCTAGACAGAGCTTTGGCATCGCAACAGAGGACTGATTATACTGCAGTGCTCTTTTATGCTTCCTGGTGCCCACTTTCAAGCACAATGTATCCTACATTTGAAAAGCTCAGCTTCATGTTCCCTCAAGTAGAGCATTTGGCCATTGAGCAATCTTCAGCCCTGCCGAGTGTGTTCTCAAGATATGGAATACATAGCTTCCCTTCGATTTTACTAGTCAATCAGACATCAATGGTGCGTTATCATGGTCCAAAAAATCTCTCCTCACTTGCACAGTTTTACCAGAAAACCACAGGACTTGAACCAGTTCACTATTTTGATGGCGATCATACCGTTAGCTTAAACATTCGTGAAAAATCTGTAATCCAGTCAATGAGTAACATGTCACTAAGGGAGATATCAAGGAGGGAACCCTTTTTAGCTTTTGCTACATTGTTTCTCTGTTTGAGGGTGCTTCTGTATATATTCTCGAAGGTATTGACTCGCCTCCAAGCTTTCTGGGTCCTATACGTTCCTCATTTTAACTTGGGAATATTTGGGGAGACGAGTCAAATTATGGGGCGTATCCTCCACATGGTTGATGTTAGGAGGATTTGGACCAAGCTGAGATTATGCAAGACGAGGAACTTCCACGAGGGGGCAAAGAACGCCAGGGTTTGGGCTTCTTCCCTAACTTCTGTCTCCTTGGGCAAATCTTCATCTGCTCGATCGTCGACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

298

Amino Acids

33.7

Weight (kDa)

9.63

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03860
fragaria_vesca	FvH4_1g28240
malus_domestica	MD12G1005000.v1.1 MD14G1003500.v1.1
prunus_persica	Prupe.7G006000_v2.0.a1 Prupe.7G006000_v2.0.a1
pyrus_communis	pycom12g00410 pycom14g00150
rosa_chinensis	RchiOBHm_Chr3g0496981 RchiOBHm_Chr6g0254961
rosa_laevigata	RLG00000022490
rosa_roxburghii	Rroxscaffold_6G00388580
rosa_rugosa	Rorug03G0288600
rosa_samantha	Rh3AG333000 Rh3BG086200 Rh3BG369100 Rh3CG367100 Rh3DG368400
rosa_wichuraiana	Rw1G004010 Rw3G029260 Rw5G011110 Rw6G014640 Rw7G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	884
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	160, 745, 808, 828
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	116, 252, 275, 473
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	236, 821
AluBI	AGCT	9 cut(s)	44, 185, 280, 285, 369, 510, 593, 665, 775
AluI	AGCT	9 cut(s)	44, 185, 280, 285, 369, 510, 593, 665, 775
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	707, 856
AoxI	GGCC	2 cut(s)	33, 312
ApeKI	GCWGC	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	419, 673, 768
AvaII	GGWCC	3 cut(s)	419, 673, 768
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	240
BauI	CACGAG	2 cut(s)	86, 803
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	3 cut(s)	137, 158, 485
BciT130I	CCWGG	2 cut(s)	238, 823
BciVI	GTATCC	2 cut(s)	273, 746
BcoDI	GTCTC	2 cut(s)	707, 856
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	2 cut(s)	176, 386
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	2 cut(s)	273, 746
BisI	GCNGC	2 cut(s)	33, 42
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	34, 43
Bme1390I	CCNGG	2 cut(s)	238, 823
Bme18I	GGWCC	3 cut(s)	419, 673, 768
BmgT120I	GGNCC	3 cut(s)	419, 673, 768
BmiI	GGNNCC	3 cut(s)	242, 582, 674
BmrFI	CCNGG	2 cut(s)	238, 823
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	3 cut(s)	140, 282, 334
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	36, 822, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 745, 808, 828
Bse1I	ACTGG	2 cut(s)	476, 538
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	238, 823
BseDI	CCNNGG	3 cut(s)	36, 822, 855
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	160, 745, 808, 828
BseMII	CTCAG	2 cut(s)	295, 767
BseNI	ACTGG	2 cut(s)	476, 538
BseRI	GAGGAG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	35, 314
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	160, 745, 808, 828
BsmAI	GTCTC	2 cut(s)	707, 856
BsmBI	CGTCTC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	35, 314
Bsp1286I	GDGCHC	2 cut(s)	225, 245
Bsp143I	GATC	3 cut(s)	135, 496, 878
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	35, 314
BspCNI	CTCAG	2 cut(s)	294, 768
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	242, 582, 674
BspMAI	CTGCAG	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	476, 538
BssECI	CCNNGG	3 cut(s)	36, 822, 855
BssMI	GATC	3 cut(s)	135, 496, 878
BssSI	CACGAG	2 cut(s)	86, 803
BssT1I	CCWWGG	2 cut(s)	36, 855
Bst2BI	CACGAG	2 cut(s)	86, 803
Bst2UI	CCWGG	2 cut(s)	238, 823
Bst4CI	ACNGT	2 cut(s)	447, 505
BstDEI	CTNAG	3 cut(s)	281, 560, 776
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	138, 499, 881
BstMAI	GTCTC	2 cut(s)	707, 856
BstMBI	GATC	3 cut(s)	135, 496, 878
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 41, 818
BstNI	CCWGG	2 cut(s)	238, 823
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	236, 821
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	60
BsuI	GTATCC	2 cut(s)	273, 746
BsuRI	GGCC	2 cut(s)	35, 314
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	419, 673, 768
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	4 cut(s)	289, 416, 553, 745
DdeI	CTNAG	3 cut(s)	281, 560, 776
DpnI	GATC	3 cut(s)	137, 498, 880
DpnII	GATC	3 cut(s)	135, 496, 878
EaeI	YGGCCR	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	36, 855
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	3 cut(s)	419, 673, 768
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	236, 821
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	36, 855
ErhI	CCWWGG	2 cut(s)	36, 855
Esp3I	CGTCTC	1 cut(s)	707
FaeI	CATG	4 cut(s)	292, 419, 556, 748
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	4 cut(s)	288, 415, 552, 744
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	2 cut(s)	33, 42
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	33, 42
FspBI	CTAG	2 cut(s)	176, 386
GluI	GCNGC	2 cut(s)	33, 42
HaeIII	GGCC	2 cut(s)	35, 314
Hin1II	CATG	4 cut(s)	292, 419, 556, 748
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	3 cut(s)	89, 652, 718
Hpy166II	GTNNAC	2 cut(s)	481, 885
Hpy188I	TCNGA	2 cut(s)	94, 396
Hpy188III	TCNNGA	5 cut(s)	86, 133, 351, 521, 640
Hpy8I	GTNNAC	2 cut(s)	481, 885
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	3 cut(s)	122, 384, 637
HpyCH4III	ACNGT	2 cut(s)	447, 505
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	3 cut(s)	218, 443, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 41, 818
HpyF3I	CTNAG	3 cut(s)	281, 560, 776
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	4 cut(s)	292, 419, 556, 748
Kzo9I	GATC	3 cut(s)	135, 496, 878
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	176, 386
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	4 cut(s)	58, 104, 548, 555
MalI	GATC	3 cut(s)	137, 498, 880
MboI	GATC	3 cut(s)	135, 496, 878
MboII	GAAGA	4 cut(s)	60, 318, 828, 858
MhlI	GDGCHC	2 cut(s)	225, 245
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	1 cut(s)	723
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	98, 646, 727
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	2 cut(s)	512, 693
Msp20I	TGGCCA	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	238, 823
MvaI	CCWGG	2 cut(s)	238, 823
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	38, 41, 818
NdeII	GATC	3 cut(s)	135, 496, 878
NlaIII	CATG	4 cut(s)	292, 419, 556, 748
NlaIV	GGNNCC	3 cut(s)	242, 582, 674
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	1 cut(s)	556
PciI	ACATGT	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	828
PkrI	GCNGC	2 cut(s)	34, 43
Ple19I	CGATCG	1 cut(s)	881
PleI	GAGTC	3 cut(s)	97, 646, 726
PpsI	GAGTC	3 cut(s)	97, 646, 726
PpuMI	RGGWCCY	1 cut(s)	673
PscI	ACATGT	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	236, 821
PspGI	CCWGG	2 cut(s)	236, 821
PspN4I	GGNNCC	3 cut(s)	242, 582, 674
PspPI	GGNCC	3 cut(s)	419, 673, 768
PspPPI	RGGWCCY	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	881
SalI	GTCGAC	1 cut(s)	883
SaqAI	TTAA	2 cut(s)	512, 693
SatI	GCNGC	2 cut(s)	33, 42
Sau3AI	GATC	3 cut(s)	135, 496, 878
Sau96I	GGNCC	3 cut(s)	419, 673, 768
SchI	GAGTC	3 cut(s)	98, 646, 727
ScrFI	CCNGG	2 cut(s)	238, 823
SduI	GDGCHC	2 cut(s)	225, 245
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	3 cut(s)	419, 673, 768
SmlI	CTYRAG	3 cut(s)	155, 297, 349
SmoI	CTYRAG	3 cut(s)	155, 297, 349
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	2 cut(s)	18, 705
SspMI	CTAG	2 cut(s)	176, 386
StyD4I	CCNGG	2 cut(s)	236, 821
StyI	CCWWGG	2 cut(s)	36, 855
TaaI	ACNGT	2 cut(s)	447, 505
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	6 cut(s)	52, 134, 377, 641, 877, 884
TasI	AATT	1 cut(s)	723
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	512, 693
Tru9I	TTAA	2 cut(s)	512, 693
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	277, 858
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	828
VpaK11BI	GGWCC	3 cut(s)	419, 673, 768
XceI	RCATGY	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	176, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.