Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008614

Physical Location & Seq

Genomic Coordinates Forward (+)

29332474 .. 29333314

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAAAAATTGGTGAAGGAGCGATTGAAGATAGCAACAGAAACTGCGAGGGCACTTTCACACTTACATCGTTCCGCCATCCATCGAATTATTCATCGAGATGTCAAGGCAACGAATATACTGTTGGATGAGAAACTTACGGCCAAAGTGACGGACTTCGGAGCTTCAAAACTGGTTCCTGACGATCAAACTATACTTTCAACTTTAGTGCAGGGGACAATGGGATACTTGGACCCTGAATATGTTCGGTCCAACACACTAACAGAAAAGAGTGATGTTTATAGCTTTGGAGTTGTCCTCGTGGAGCTACTGACATGCAAAAAAGCAGTTCGCTTCGATAAACCCGAGGCGGAGAGAAACCTGGCCAACGTCTTTGTTTCTACAATAAATAAAGGTCCGCTGCATCCAATTCTTGATGGTGAAATAGTCAAGGATGGAAATTGGGAGATCATCGAAAGAGTTGCCAAGCTCGCAGAAGAATGCTTGAGTGTGAAAGGAGATGAAAGACCTTCCATGGAAGTGGTAGAGAGGAAGCTAGATGAAATACTGAAAACTTTGGAAAAGCAACCAGGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

6.55

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 179	9.4e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 174	2.2e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03860
fragaria_vesca	FvH4_1g28240
malus_domestica	MD12G1005000.v1.1 MD14G1003500.v1.1
prunus_persica	Prupe.7G006000_v2.0.a1 Prupe.7G006000_v2.0.a1
pyrus_communis	pycom12g00410 pycom14g00150
rosa_chinensis	RchiOBHm_Chr3g0496981 RchiOBHm_Chr6g0254961
rosa_laevigata	RLG00000022490
rosa_roxburghii	Rroxscaffold_6G00388580
rosa_rugosa	Rorug03G0288600
rosa_samantha	Rh3AG333000 Rh3BG086200 Rh3BG369100 Rh3CG367100 Rh3DG368400
rosa_wichuraiana	Rw1G004010 Rw3G029260 Rw5G011110 Rw6G014640 Rw7G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 350, 398
AcoI	YGGCCR	2 cut(s)	141, 363
AgsI	TTSAA	3 cut(s)	28, 168, 201
AjnI	CCWGG	2 cut(s)	360, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	5 cut(s)	164, 285, 307, 469, 535
AluI	AGCT	5 cut(s)	164, 285, 307, 469, 535
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	141, 363
ApeKI	GCWGC	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	3 cut(s)	232, 249, 395
AsuHPI	GGTGA	2 cut(s)	25, 431
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	3 cut(s)	232, 249, 395
BaeGI	GKGCMC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	365
BauI	CACGAG	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	4 cut(s)	86, 90, 410, 428
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	2 cut(s)	362, 570
BciVI	GTATCC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	362, 570
Bme18I	GGWCC	3 cut(s)	232, 249, 395
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	232, 249, 395
BmiI	GGNNCC	2 cut(s)	177, 234
BmrFI	CCNGG	2 cut(s)	362, 570
BmsI	GCATC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpuEI	CTTGAG	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	345, 513, 569
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	362, 570
BseDI	CCNNGG	3 cut(s)	345, 513, 569
BseGI	GGATG	4 cut(s)	78, 133, 403, 439
BseNI	ACTGG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	143, 365
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	143, 365
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	184, 447
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	3 cut(s)	75, 350, 398
BspANI	GGCC	2 cut(s)	143, 365
BspLI	GGNNCC	2 cut(s)	177, 234
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	345, 513, 569
BssMI	GATC	2 cut(s)	184, 447
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	362, 570
Bst4CI	ACNGT	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	4 cut(s)	78, 133, 403, 439
BstKTI	GATC	2 cut(s)	187, 450
BstMBI	GATC	2 cut(s)	184, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	2 cut(s)	362, 570
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	360, 568
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	143, 365
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	4 cut(s)	78, 133, 403, 439
Cac8I	GCNNGC	1 cut(s)	471
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	232, 249, 395
CviAII	CATG	2 cut(s)	315, 514
CviJI	RGCY	7 cut(s)	143, 164, 285, 307, 365, 469, 535
CviKI_1	RGCY	7 cut(s)	143, 164, 285, 307, 365, 469, 535
DpnI	GATC	2 cut(s)	186, 449
DpnII	GATC	2 cut(s)	184, 447
EaeI	YGGCCR	2 cut(s)	141, 363
EciI	GGCGGA	2 cut(s)	64, 365
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	3 cut(s)	232, 249, 395
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	360, 568
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	318, 517
FaiI	YATR	6 cut(s)	119, 194, 243, 282, 316, 515
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	314, 513
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	4 cut(s)	65, 140, 390, 446
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	143, 365
Hin1II	CATG	2 cut(s)	318, 517
HphI	GGTGA	2 cut(s)	25, 431
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	3 cut(s)	98, 179, 413
HpyAV	CCTTC	2 cut(s)	10, 519
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	211, 318, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	318, 517
Kzo9I	GATC	2 cut(s)	184, 447
LmnI	GCTCC	3 cut(s)	19, 161, 304
LpnPI	CCDG	7 cut(s)	158, 192, 197, 249, 347, 374, 555
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	186, 449
MboI	GATC	2 cut(s)	184, 447
MboII	GAAGA	2 cut(s)	40, 488
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	4 cut(s)	8, 87, 408, 439
MluNI	TGGCCA	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	105, 276
MnlI	CCTC	4 cut(s)	42, 308, 340, 522
Mox20I	TGGCCA	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	99, 518
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	362, 570
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	362, 570
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	2 cut(s)	184, 447
NlaIII	CATG	2 cut(s)	318, 517
NlaIV	GGNNCC	2 cut(s)	177, 234
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	360, 568
PspGI	CCWGG	2 cut(s)	360, 568
PspN4I	GGNNCC	2 cut(s)	177, 234
PspPI	GGNCC	3 cut(s)	232, 249, 395
PstNI	CAGNNNCTG	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	99, 518
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	2 cut(s)	184, 447
Sau96I	GGNCC	3 cut(s)	232, 249, 395
ScrFI	CCNGG	2 cut(s)	362, 570
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	166, 287, 309, 363, 372, 397, 471, 511, 537
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	3 cut(s)	232, 249, 395
SmiMI	CAYNNNNRTG	2 cut(s)	99, 518
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	4 cut(s)	8, 87, 408, 439
SsiI	CCGC	3 cut(s)	75, 350, 398
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	360, 568
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	85, 97, 336, 453
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	8, 87, 408, 439
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	17, 83, 516, 555
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	232, 249, 395
XceI	RCATGY	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.