Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008614

Physical Location & Seq

Genomic Coordinates Forward (+)

81614 .. 85212

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATAAATCTGTAATCTTTTTGTGTATCGCTGCCTTGGCAACTTCGCTACGATTAGTTTCTTCGTCTTCTGTTTTATGCCCTCACGACTCCGATTTCTTACGGTACAGCCTTCAATCTCAATGCCCCATCTGGATCACCCCCCATCCACCCCTCAAGGTGGATGGAAACTTCCTAGACAGAGCTTTGGCATCGCAACAGAGGACTGATTATACAGCAGTGCTCTTTTATGCTTCCTGGTGCCCATTTTCACGCACAATGTATCCTACATTTGAAAAGCTCAGCTTCATGTTCCCTCAAGTAGAACATTTGGCCATTGAGCAATCTTCAGCCCTGCCGAGTGTGTTCTCAAGATATGGAATACATAGTTTCCCTTCGATTTTAATAGTCAATCAGACATCAAGGGTGCGTTATCATGGTCCAAAACGTCTCTCCTCGCTTGCACAGTTTTACCAGAAAACCACAGGACTTAAACCAGTTCAATATTTTGATGGCGATCAAATAGTCAGCTTAAACATTCGTGAAAAATCTTTTATCCAGTCAATGGGTAACATGTCACTCAGGGAGATATCAAGGAGGGAACCCTATTTAGCTTTTGCCATATTGTTTCTCTGTTTGAGGGTGCTTCTGTATATATTCCCAAAGGTATTGACTCGCCTCCATGCTTTCTGGGTCCTATACGTTCCCCATTTTAACTTGGGAATATTTGGGGAGACGAGTCAAAGTATGGGGCGTATCCTCCCCATGGTTGACGTTAGGAGGATTTGGACCAAGCTGAGATTATGCAAGACGAGGAACTTCCACGAGGGAGCAAAGAATGCCAGGGTTTGGGCTTCTTCCCTAACTTCTGTCTCCTTGGGCAAATCTTCATCTGCTCGATCGTCGTCGTTGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

300

Amino Acids

34.09

Weight (kDa)

9.92

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03860
fragaria_vesca	FvH4_1g28240
malus_domestica	MD12G1005000.v1.1 MD14G1003500.v1.1
prunus_persica	Prupe.7G006000_v2.0.a1 Prupe.7G006000_v2.0.a1
pyrus_communis	pycom12g00410 pycom14g00150
rosa_chinensis	RchiOBHm_Chr3g0496981 RchiOBHm_Chr6g0254961
rosa_laevigata	RLG00000022490
rosa_roxburghii	Rroxscaffold_6G00388580
rosa_rugosa	Rorug03G0288600
rosa_samantha	Rh3AG333000 Rh3BG086200 Rh3BG369100 Rh3CG367100 Rh3DG368400
rosa_wichuraiana	Rw1G004010 Rw3G029260 Rw5G011110 Rw6G014640 Rw7G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	2 cut(s)	544, 828
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	4 cut(s)	160, 544, 745, 828
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	116, 275, 482
AjnI	CCWGG	2 cut(s)	236, 821
AluBI	AGCT	6 cut(s)	185, 280, 285, 510, 593, 775
AluI	AGCT	6 cut(s)	185, 280, 285, 510, 593, 775
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	434, 707, 856
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	419, 673, 768
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	3 cut(s)	419, 673, 768
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	4 cut(s)	137, 153, 158, 485
BciT130I	CCWGG	2 cut(s)	238, 823
BciVI	GTATCC	2 cut(s)	273, 746
BcoDI	GTCTC	3 cut(s)	434, 707, 856
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	2 cut(s)	273, 746
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	238, 823
Bme18I	GGWCC	3 cut(s)	419, 673, 768
BmgT120I	GGNCC	3 cut(s)	419, 673, 768
BmiI	GGNNCC	3 cut(s)	242, 582, 674
BmrFI	CCNGG	2 cut(s)	238, 823
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	3 cut(s)	140, 282, 334
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	36, 744, 822, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 544, 745, 828
Bse1I	ACTGG	2 cut(s)	476, 538
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	238, 823
BseDI	CCNNGG	4 cut(s)	36, 744, 822, 855
BseGI	GGATG	2 cut(s)	145, 169
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	160, 544, 745, 828
BseMII	CTCAG	3 cut(s)	295, 574, 767
BseNI	ACTGG	2 cut(s)	476, 538
BseRI	GAGGAG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	160, 544, 745, 828
BsmAI	GTCTC	3 cut(s)	434, 707, 856
BsmBI	CGTCTC	2 cut(s)	434, 707
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	225, 245
Bsp143I	GATC	3 cut(s)	135, 496, 878
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	744
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	3 cut(s)	294, 573, 768
BspLI	GGNNCC	3 cut(s)	242, 582, 674
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	476, 538
BssECI	CCNNGG	4 cut(s)	36, 744, 822, 855
BssMI	GATC	3 cut(s)	135, 496, 878
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	3 cut(s)	36, 744, 855
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	2 cut(s)	238, 823
Bst4CI	ACNGT	2 cut(s)	105, 447
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	281, 560, 776
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	145, 169
BstKTI	GATC	3 cut(s)	138, 499, 881
BstMAI	GTCTC	3 cut(s)	434, 707, 856
BstMBI	GATC	3 cut(s)	135, 496, 878
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 818
BstNI	CCWGG	2 cut(s)	238, 823
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	236, 821
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	60
BsuI	GTATCC	2 cut(s)	273, 746
BsuRI	GGCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	145, 169
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	419, 673, 768
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	5 cut(s)	289, 416, 553, 662, 745
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	281, 560, 776
DpnI	GATC	3 cut(s)	137, 498, 880
DpnII	GATC	3 cut(s)	135, 496, 878
EaeI	YGGCCR	1 cut(s)	312
Eco130I	CCWWGG	3 cut(s)	36, 744, 855
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	3 cut(s)	419, 673, 768
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	236, 821
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	3 cut(s)	36, 744, 855
ErhI	CCWWGG	3 cut(s)	36, 744, 855
Esp3I	CGTCTC	2 cut(s)	434, 707
FaeI	CATG	5 cut(s)	292, 419, 556, 665, 748
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	5 cut(s)	288, 415, 552, 661, 744
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	132, 176
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	292, 419, 556, 665, 748
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	89, 652, 718
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	2 cut(s)	94, 396
Hpy188III	TCNNGA	4 cut(s)	86, 133, 351, 521
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	2 cut(s)	886, 889
HpyAV	CCTTC	2 cut(s)	122, 384
HpyCH4III	ACNGT	2 cut(s)	105, 447
HpyCH4IV	ACGT	3 cut(s)	427, 681, 753
HpyCH4V	TGCA	2 cut(s)	443, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 818
HpyF3I	CTNAG	3 cut(s)	281, 560, 776
HpySE526I	ACGT	3 cut(s)	427, 681, 753
Hsp92II	CATG	5 cut(s)	292, 419, 556, 665, 748
Kzo9I	GATC	3 cut(s)	135, 496, 878
LmnI	GCTCC	1 cut(s)	809
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	427, 681, 753
MaeIII	GTNAC	2 cut(s)	548, 555
MalI	GATC	3 cut(s)	137, 498, 880
MboI	GATC	3 cut(s)	135, 496, 878
MboII	GAAGA	5 cut(s)	54, 60, 318, 828, 858
MhlI	GDGCHC	2 cut(s)	225, 245
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	83, 646, 727
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	5 cut(s)	383, 471, 512, 693, 898
Msp20I	TGGCCA	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	238, 823
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	2 cut(s)	238, 823
MwoI	GCNNNNNNNGC	2 cut(s)	38, 818
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	3 cut(s)	135, 496, 878
NlaIII	CATG	5 cut(s)	292, 419, 556, 665, 748
NlaIV	GGNNCC	3 cut(s)	242, 582, 674
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	1 cut(s)	556
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	823
PflMI	CCANNNNNTGG	2 cut(s)	544, 828
PkrI	GCNGC	1 cut(s)	34
Ple19I	CGATCG	1 cut(s)	881
PleI	GAGTC	3 cut(s)	83, 646, 726
PpsI	GAGTC	3 cut(s)	83, 646, 726
PpuMI	RGGWCCY	1 cut(s)	673
PscI	ACATGT	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	236, 821
PspGI	CCWGG	2 cut(s)	236, 821
PspN4I	GGNNCC	3 cut(s)	242, 582, 674
PspPI	GGNCC	3 cut(s)	419, 673, 768
PspPPI	RGGWCCY	1 cut(s)	673
PvuI	CGATCG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	383, 471, 512, 693, 898
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	135, 496, 878
Sau96I	GGNCC	3 cut(s)	419, 673, 768
SchI	GAGTC	3 cut(s)	83, 646, 727
ScrFI	CCNGG	2 cut(s)	238, 823
SduI	GDGCHC	2 cut(s)	225, 245
SfaNI	GCATC	1 cut(s)	200
SinI	GGWCC	3 cut(s)	419, 673, 768
SmlI	CTYRAG	3 cut(s)	155, 297, 349
SmoI	CTYRAG	3 cut(s)	155, 297, 349
SspI	AATATT	2 cut(s)	485, 705
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	236, 821
StyI	CCWWGG	3 cut(s)	36, 744, 855
TaaI	ACNGT	2 cut(s)	105, 447
TaiI	ACGT	3 cut(s)	430, 684, 756
TaqI	TCGA	2 cut(s)	377, 877
Tru1I	TTAA	5 cut(s)	383, 471, 512, 693, 898
Tru9I	TTAA	5 cut(s)	383, 471, 512, 693, 898
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	277, 858
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	2 cut(s)	544, 828
VpaK11BI	GGWCC	3 cut(s)	419, 673, 768
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.