Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008614

Physical Location & Seq

Genomic Coordinates Reverse (-)

7536078 .. 7539262

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGTTTTAAATCTGCAATCTTCTTGTTGTTGTTATATATCACAATCACAACGCTACAATTGGTATCGTCGTCTTCGCCTGTCTGCCCTCCCCAGTCCGATTTGTTCCGTATCACTCTTGAATCTCAATGCCCCGCCGCAACCTCCCCCTACCCACCCCTCCAGGTGGATGGGAACTTCATTGACAGAGCGTTAGCATCAACACAGAACACTGGTTATACTTCTGTGCTCTTTTACGCTTCCTGGTGCCCATTTTCACGCAAATTGTATCCTATTTTTGAAATGCTTAGCTTCATGTTCCCTCAAGTGGAGCATTTAGCAGTTGAGCAATCTTCAGCCTTCCCAAGTGTATTCTCAAGATATGGAATCCCTAGCTTCCCTTCTATTTTAATAGTCAATCAGACGTCAAGGGTCCGATATTTTGGTCCAAAAGATCTCCCGTCCCTCGTCCAATTTTACCAGAAAACCACAGTACTTCAGTACTTAATATATAGAGCATTATTTTTGTGCAAATATTCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

174

Amino Acids

19.78

Weight (kDa)

9.1

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	74 - 153	9.1e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03860
fragaria_vesca	FvH4_1g28240
malus_domestica	MD12G1005000.v1.1 MD14G1003500.v1.1
prunus_persica	Prupe.7G006000_v2.0.a1 Prupe.7G006000_v2.0.a1
pyrus_communis	pycom12g00410 pycom14g00150
rosa_chinensis	RchiOBHm_Chr3g0496981 RchiOBHm_Chr6g0254961
rosa_laevigata	RLG00000022490
rosa_roxburghii	Rroxscaffold_6G00388580
rosa_rugosa	Rorug03G0288600
rosa_samantha	Rh3AG333000 Rh3BG086200 Rh3BG369100 Rh3CG367100 Rh3DG368400
rosa_wichuraiana	Rw1G004010 Rw3G029260 Rw5G011110 Rw6G014640 Rw7G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	246
AciI	CCGC	2 cut(s)	135, 138
AcuI	CTGAAG	2 cut(s)	318, 461
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	474, 482
AfiI	CCNNNNNNNGG	2 cut(s)	166, 307
AgsI	TTSAA	2 cut(s)	122, 281
AjnI	CCWGG	3 cut(s)	162, 242, 518
AluBI	AGCT	2 cut(s)	291, 375
AluI	AGCT	2 cut(s)	291, 375
Alw21I	GWGCWC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	412, 425
AvaII	GGWCC	2 cut(s)	412, 425
BaeGI	GKGCMC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	3 cut(s)	164, 244, 520
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	138
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	139
BmcAI	AGTACT	2 cut(s)	474, 482
Bme1390I	CCNGG	3 cut(s)	164, 244, 520
Bme18I	GGWCC	2 cut(s)	412, 425
BmgT120I	GGNCC	2 cut(s)	412, 425
BmiI	GGNNCC	2 cut(s)	248, 413
BmrFI	CCNGG	3 cut(s)	164, 244, 520
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	288, 340
BsaHI	GRCGYC	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 307
Bse1I	ACTGG	2 cut(s)	94, 217
BseBI	CCWGG	3 cut(s)	164, 244, 520
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	166, 307
BseNI	ACTGG	2 cut(s)	94, 217
BseSI	GKGCMC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	166, 307
BsmFI	GGGAC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	231, 251
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	2 cut(s)	135, 138
BspLI	GGNNCC	2 cut(s)	248, 413
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	94, 217
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	404
Bst2UI	CCWGG	3 cut(s)	164, 244, 520
Bst4CI	ACNGT	1 cut(s)	472
BstACI	GRCGYC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstNI	CCWGG	3 cut(s)	164, 244, 520
BstSCI	CCNGG	3 cut(s)	162, 242, 518
BstSLI	GKGCMC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	412, 425
Csp6I	GTAC	2 cut(s)	473, 481
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	3 cut(s)	291, 338, 375
CviKI_1	RGCY	3 cut(s)	291, 338, 375
CviQI	GTAC	2 cut(s)	473, 481
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DraI	TTTAAA	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	412, 425
Eco57I	CTGAAG	2 cut(s)	318, 461
EcoRII	CCWGG	3 cut(s)	162, 242, 518
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	37, 39, 219, 296, 363, 490, 492
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	2 cut(s)	122, 366
Hpy188I	TCNGA	3 cut(s)	100, 402, 416
Hpy188III	TCNNGA	2 cut(s)	119, 357
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	349, 390
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	17, 510
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	93, 107, 149, 176, 198, 229, 256, 473, 505
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	404
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	13, 66, 324
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	231, 251
MluCI	AATT	3 cut(s)	59, 263, 452
MnlI	CCTC	5 cut(s)	99, 154, 170, 312, 455
MseI	TTAA	3 cut(s)	9, 389, 485
MspR9I	CCNGG	3 cut(s)	164, 244, 520
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	3 cut(s)	164, 244, 520
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	248, 413
PfeI	GAWTC	2 cut(s)	122, 366
PkrI	GCNGC	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	162, 242, 518
PspGI	CCWGG	3 cut(s)	162, 242, 518
PspN4I	GGNNCC	2 cut(s)	248, 413
PspPI	GGNCC	2 cut(s)	412, 425
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	2 cut(s)	474, 482
RsaNI	GTAC	2 cut(s)	473, 481
SaqAI	TTAA	3 cut(s)	9, 389, 485
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	412, 425
ScaI	AGTACT	2 cut(s)	474, 482
ScrFI	CCNGG	3 cut(s)	164, 244, 520
SduI	GDGCHC	2 cut(s)	231, 251
SetI	ASST	6 cut(s)	146, 168, 293, 377, 407, 524
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	2 cut(s)	412, 425
SmlI	CTYRAG	2 cut(s)	303, 355
SmoI	CTYRAG	2 cut(s)	303, 355
Sse9I	AATT	3 cut(s)	59, 263, 452
SsiI	CCGC	2 cut(s)	135, 138
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	162, 242, 518
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	407
TasI	AATT	3 cut(s)	59, 263, 452
TatI	WGTACW	2 cut(s)	472, 480
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	122, 366
Tru1I	TTAA	3 cut(s)	9, 389, 485
Tru9I	TTAA	3 cut(s)	9, 389, 485
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	169, 283
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	412, 425
XspI	CTAG	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	405
ZrmI	AGTACT	2 cut(s)	474, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.