Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Forward (+)

10242971 .. 10246136

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATCGAGCTACTCTCCGACGATCTTACCGATTTATCCACCCTGCAACATCACCATCAGGCGGAATTGCGGAGGGAAGAGGAAAATATTGAAAAGAAATGTGGGAATCATGGTGGGGTGTGCGCAATATGCTTGGATGAGATTGTGCTTCAAGAAACTGCTCTGGTAAAAGGTTGCGAGCATGCCTACTGTGCAACCTGTATTCTTCGTTGGGTGACATACAGCCAAAAACCCACCTGCCCTCAGTGTAAACATCCTTTTGAATTCCTGAATGTCCATCGTTCCCTTGATGGCAGCATTCAAGATTACATGTTCGAGGAGAGTGTGTGCCTACTCCTTAGAGCCAAATGGTTTGAGCCATTAGTTGTGGAGTGGCGTGAAGAGGTGTATGAAGGCCATGAAGATTATTATTATTATCCCTACGAGGATGAAGAGGAGGATGATCTAGATGATGCTTACTTCAGCAGTTCATCGGTTATCCGGATTGGTAATCGAAGATGGGGTGATAATGGATATGTGAGGAGTGGGCGTCAAGAAGCAAGGCCTGTTCACAGATCAAGTATCCAGGATTCGGGTGCTAGTTCATCTCGTGAGCCTAGGAAGAAAGAGGCTGCAATGGATAAGACTGGGAGGCGTGCAAAGCGGGCACTCAAACAGGAAGCGGCTGATAAGGCAGCTGCGGCAAAACATCAGCAGCATTTGGCAAGGTTGGGCCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

241

Amino Acids

27.72

Weight (kDa)

5.8

Isoelectric Point (pI)

68.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	41 - 84	8.4e-10	Ring finger domain
zf-C3HC4_2	PF13923	41 - 83	9.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	41 - 83	1.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc16I	TGCGCA	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	480
AciI	CCGC	5 cut(s)	62, 70, 643, 662, 680
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	61, 571
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	92, 152, 263, 302
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	2 cut(s)	10, 677
AluI	AGCT	2 cut(s)	10, 677
Aor13HI	TCCGGA	1 cut(s)	480
AoxI	GGCC	3 cut(s)	394, 542, 712
ApeKI	GCWGC	5 cut(s)	294, 611, 674, 677, 694
ApoI	RAATTY	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	712
AsuHPI	GGTGA	3 cut(s)	44, 226, 515
AvrII	CCTAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	649
BauI	CACGAG	1 cut(s)	588
BbvI	GCAGC	5 cut(s)	306, 598, 664, 686, 706
BccI	CCATC	4 cut(s)	63, 284, 285, 492
BciT130I	CCWGG	1 cut(s)	566
BciVI	GTATCC	1 cut(s)	572
BfaI	CTAG	3 cut(s)	446, 579, 597
BfuAI	ACCTGC	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	7 cut(s)	295, 612, 663, 675, 678, 681, 695
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	7 cut(s)	296, 613, 664, 676, 679, 682, 696
Bme1390I	CCNGG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	712
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	636
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	596
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 514, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 571
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	4 cut(s)	142, 253, 433, 445
BseLI	CCNNNNNNNGG	2 cut(s)	61, 571
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	3 cut(s)	332, 449, 535
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	5 cut(s)	306, 598, 664, 686, 706
BshFI	GGCC	3 cut(s)	396, 544, 714
BsiSI	CCGG	2 cut(s)	481, 715
BslI	CCNNNNNNNGG	2 cut(s)	61, 571
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	396, 544, 714
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp13I	TCCGGA	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	3, 22, 442, 554
BspACI	CCGC	5 cut(s)	62, 70, 643, 662, 680
BspANI	GGCC	3 cut(s)	396, 544, 714
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	3, 22, 442, 554
BssNI	GRCGYC	1 cut(s)	529
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	3 cut(s)	72, 375, 426
BstACI	GRCGYC	1 cut(s)	529
BstC8I	GCNNGC	4 cut(s)	179, 183, 636, 645
BstDEI	CTNAG	2 cut(s)	243, 338
BstF5I	GGATG	4 cut(s)	142, 253, 433, 445
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	4 cut(s)	6, 25, 445, 557
BstMBI	GATC	4 cut(s)	3, 22, 442, 554
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 191, 640, 644, 671, 680
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	2 cut(s)	185, 313
BstSCI	CCNGG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	5 cut(s)	306, 598, 664, 686, 706
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	396, 544, 714
BtsCI	GGATG	4 cut(s)	142, 253, 433, 445
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	4 cut(s)	179, 183, 636, 645
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	1 cut(s)	518
CviAII	CATG	4 cut(s)	110, 182, 310, 398
DdeI	CTNAG	2 cut(s)	243, 338
DpnI	GATC	4 cut(s)	5, 24, 444, 556
DpnII	GATC	4 cut(s)	3, 22, 442, 554
Eam1104I	CTCTTC	3 cut(s)	72, 375, 426
EarI	CTCTTC	3 cut(s)	72, 375, 426
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	596
Eco147I	AGGCCT	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	4 cut(s)	113, 185, 313, 401
FaiI	YATR	8 cut(s)	111, 130, 183, 220, 311, 390, 399, 516
FatI	CATG	4 cut(s)	109, 181, 309, 397
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	7 cut(s)	295, 612, 663, 675, 678, 681, 695
FokI	GGATG	4 cut(s)	149, 240, 440, 452
Fsp4HI	GCNGC	7 cut(s)	295, 612, 663, 675, 678, 681, 695
FspBI	CTAG	3 cut(s)	446, 579, 597
FspI	TGCGCA	1 cut(s)	124
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	7 cut(s)	295, 612, 663, 675, 678, 681, 695
HaeIII	GGCC	3 cut(s)	396, 544, 714
HapII	CCGG	2 cut(s)	481, 715
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	529
Hin1II	CATG	4 cut(s)	113, 185, 313, 401
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	106, 569
HpaII	CCGG	2 cut(s)	481, 715
HphI	GGTGA	3 cut(s)	44, 226, 515
Hpy166II	GTNNAC	2 cut(s)	251, 550
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	7 cut(s)	152, 268, 302, 446, 481, 533, 590
Hpy8I	GTNNAC	2 cut(s)	251, 550
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	46, 194, 614, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 191, 640, 644, 671, 680
HpyF3I	CTNAG	2 cut(s)	243, 338
Hsp92I	GRCGYC	1 cut(s)	529
Hsp92II	CATG	4 cut(s)	113, 185, 313, 401
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	3, 22, 442, 554
Lsp1109I	GCAGC	5 cut(s)	306, 598, 664, 686, 706
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	446, 579, 597
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	5, 24, 444, 556
MboI	GATC	4 cut(s)	3, 22, 442, 554
MboII	GAAGA	7 cut(s)	89, 197, 392, 413, 443, 507, 613
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	2 cut(s)	65, 263
MmeI	TCCRAC	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	481, 715
MspR9I	CCNGG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	6 cut(s)	129, 191, 640, 644, 671, 680
NdeII	GATC	4 cut(s)	3, 22, 442, 554
NlaIII	CATG	4 cut(s)	113, 185, 313, 401
NmuCI	GTSAC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	124
NspI	RCATGY	2 cut(s)	185, 313
PaeI	GCATGC	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	544
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	106, 569
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	7 cut(s)	296, 613, 664, 676, 679, 682, 696
PscI	ACATGT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	677
SatI	GCNGC	7 cut(s)	295, 612, 663, 675, 678, 681, 695
Sau3AI	GATC	4 cut(s)	3, 22, 442, 554
Sau96I	GGNCC	1 cut(s)	712
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	649
SetI	ASST	7 cut(s)	12, 175, 200, 239, 387, 679, 710
SfaNI	GCATC	1 cut(s)	442
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	65, 263
SseBI	AGGCCT	1 cut(s)	544
SsiI	CCGC	5 cut(s)	62, 70, 643, 662, 680
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	3 cut(s)	446, 579, 597
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	6, 315, 493
TasI	AATT	2 cut(s)	65, 263
TauI	GCSGC	2 cut(s)	665, 683
TfiI	GAWTC	2 cut(s)	106, 569
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	5 cut(s)	294, 611, 674, 677, 694
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	5 cut(s)	405, 414, 444, 459, 573
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	263
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	185, 313
XmaJI	CCTAGG	1 cut(s)	596
XspI	CTAG	3 cut(s)	446, 579, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.