Pectate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53190 |
| fragaria_vesca | FvH4_6g16670 FvH4_6g16670 |
| malus_domestica | MD04G1089800.v1.1 MD12G1108300.v1.1 |
| prunus_persica | Prupe.4G097600_v2.0.a1 Prupe.4G097900_v2.0.a1 Prupe.7G126700_v2.0.a1 |
| pyrus_communis | pycom04g08480 pycom04g08490 pycom12g10830 pycom12g10840 pycom12g10850 |
| rosa_chinensis | RchiOBHm_Chr3g0470631 |
| rosa_laevigata | RLG00000024252 |
| rosa_multiflora | Rmu_sc0002115.1_g000021 |
| rosa_roxburghii | Rroxscaffold_6G00410670 |
| rosa_rugosa | Rorug03G0110700 Rorug03G0110800 |
| rosa_samantha | Rh3AG160800 Rh3BG185300 Rh3CG175700 Rh3DG189400 |
| rosa_wichuraiana | Rw3G015200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 60 |
| AciI | CCGC | 2 cut(s) | 58, 60 |
| AclWI | GGATC | 4 cut(s) | 224, 233, 236, 249 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AdeI | CACNNNGTG | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 107 |
| AgsI | TTSAA | 1 cut(s) | 34 |
| AluBI | AGCT | 2 cut(s) | 13, 39 |
| AluI | AGCT | 2 cut(s) | 13, 39 |
| AlwI | GGATC | 4 cut(s) | 224, 233, 236, 249 |
| AoxI | GGCC | 1 cut(s) | 55 |
| BamHI | GGATCC | 1 cut(s) | 241 |
| BccI | CCATC | 3 cut(s) | 47, 215, 241 |
| BceAI | ACGGC | 2 cut(s) | 211, 232 |
| BfmI | CTRYAG | 1 cut(s) | 101 |
| BisI | GCNGC | 1 cut(s) | 58 |
| BlsI | GCNGC | 1 cut(s) | 59 |
| BmiI | GGNNCC | 1 cut(s) | 243 |
| BmsI | GCATC | 2 cut(s) | 80, 102 |
| Bsa29I | ATCGAT | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 54, 84 |
| Bse3DI | GCAATG | 1 cut(s) | 121 |
| BseCI | ATCGAT | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseGI | GGATG | 2 cut(s) | 95, 123 |
| BseMI | GCAATG | 1 cut(s) | 121 |
| Bsh1236I | CGCG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 57 |
| BshVI | ATCGAT | 1 cut(s) | 228 |
| BsnI | GGCC | 1 cut(s) | 57 |
| Bsp143I | GATC | 3 cut(s) | 225, 229, 241 |
| BspACI | CCGC | 2 cut(s) | 58, 60 |
| BspANI | GGCC | 1 cut(s) | 57 |
| BspDI | ATCGAT | 1 cut(s) | 228 |
| BspFNI | CGCG | 1 cut(s) | 60 |
| BspLI | GGNNCC | 1 cut(s) | 243 |
| BspMAI | CTGCAG | 1 cut(s) | 105 |
| BspPI | GGATC | 4 cut(s) | 224, 233, 236, 249 |
| BsrDI | GCAATG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssMI | GATC | 3 cut(s) | 225, 229, 241 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstF5I | GGATG | 2 cut(s) | 95, 123 |
| BstFNI | CGCG | 1 cut(s) | 60 |
| BstKTI | GATC | 3 cut(s) | 228, 232, 244 |
| BstMBI | GATC | 3 cut(s) | 225, 229, 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstSFI | CTRYAG | 1 cut(s) | 101 |
| BstUI | CGCG | 1 cut(s) | 60 |
| BstX2I | RGATCY | 1 cut(s) | 241 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 80 |
| BstYI | RGATCY | 1 cut(s) | 241 |
| Bsu15I | ATCGAT | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 57 |
| BsuTUI | ATCGAT | 1 cut(s) | 228 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtgZI | GCGATG | 1 cut(s) | 234 |
| BtsCI | GGATG | 2 cut(s) | 95, 123 |
| Cfr42I | CCGCGG | 1 cut(s) | 61 |
| ClaI | ATCGAT | 1 cut(s) | 228 |
| Csp6I | GTAC | 1 cut(s) | 106 |
| CviJI | RGCY | 6 cut(s) | 13, 39, 57, 167, 183, 198 |
| CviKI_1 | RGCY | 6 cut(s) | 13, 39, 57, 167, 183, 198 |
| CviQI | GTAC | 1 cut(s) | 106 |
| DpnI | GATC | 3 cut(s) | 227, 231, 243 |
| DpnII | GATC | 3 cut(s) | 225, 229, 241 |
| DraIII | CACNNNGTG | 1 cut(s) | 133 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| EcoT22I | ATGCAT | 1 cut(s) | 95 |
| FaiI | YATR | 4 cut(s) | 110, 138, 253, 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 58 |
| FokI | GGATG | 2 cut(s) | 102, 110 |
| Fsp4HI | GCNGC | 1 cut(s) | 58 |
| GluI | GCNGC | 1 cut(s) | 58 |
| HaeIII | GGCC | 1 cut(s) | 57 |
| HinfI | GANTC | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 1 cut(s) | 214 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 3 cut(s) | 93, 103, 136 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| KspI | CCGCGG | 1 cut(s) | 61 |
| Kzo9I | GATC | 3 cut(s) | 225, 229, 241 |
| LmnI | GCTCC | 1 cut(s) | 62 |
| LpnPI | CCDG | 3 cut(s) | 144, 149, 193 |
| LweI | GCATC | 2 cut(s) | 80, 102 |
| MalI | GATC | 3 cut(s) | 227, 231, 243 |
| MboI | GATC | 3 cut(s) | 225, 229, 241 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MflI | RGATCY | 1 cut(s) | 241 |
| MnlI | CCTC | 1 cut(s) | 59 |
| Mph1103I | ATGCAT | 1 cut(s) | 95 |
| MspA1I | CMGCKG | 1 cut(s) | 60 |
| MvnI | CGCG | 1 cut(s) | 60 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 3 cut(s) | 225, 229, 241 |
| NlaIV | GGNNCC | 1 cut(s) | 243 |
| NsiI | ATGCAT | 1 cut(s) | 95 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PkrI | GCNGC | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 1 cut(s) | 243 |
| PstI | CTGCAG | 1 cut(s) | 105 |
| PsuI | RGATCY | 1 cut(s) | 241 |
| RsaI | GTAC | 1 cut(s) | 107 |
| RsaNI | GTAC | 1 cut(s) | 106 |
| SacII | CCGCGG | 1 cut(s) | 61 |
| SatI | GCNGC | 1 cut(s) | 58 |
| Sau3AI | GATC | 3 cut(s) | 225, 229, 241 |
| SetI | ASST | 3 cut(s) | 15, 41, 163 |
| SfaNI | GCATC | 2 cut(s) | 80, 102 |
| SfcI | CTRYAG | 1 cut(s) | 101 |
| Sfr303I | CCGCGG | 1 cut(s) | 61 |
| SgeI | CNNG | 7 cut(s) | 22, 32, 62, 71, 171, 176, 192 |
| SgrBI | CCGCGG | 1 cut(s) | 61 |
| SsiI | CCGC | 2 cut(s) | 58, 60 |
| TaqI | TCGA | 2 cut(s) | 51, 228 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 80 |
| Zsp2I | ATGCAT | 1 cut(s) | 95 |