Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

15078979 .. 15079803

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGAAACAACAGCAACGGCAACCATCATGGCTGCTCTGGCCACCCTCACCCCACCCCAACTCTCAGATCTCACCCACACCATCCTCTCCCACACCCACCACCATCACCACCGTCTCTCCTCCCTCCTCTCCTCCCCCATCCTCTTCTCACTTACCCTCCACCGCCTCAACTCCCTCCCCCTCCCCCACAAGACTCTCCTCATCGCCAACCACCTCCTCTCCTCCCTCTACCACCTCACACTCCACTTCCACCCCTGCACCAATCCACCCCCGCCACGTGTCGTCAGAAAAAGAGACCTCGACTCCGTTCTGCTCCTCCTCTTACTCTGCGAAGTACACCAGCACAACCCGGAAGCCCTCCAAGCACCAACTACAAAATGGCGCGAAATTTTAAGCGATTTGTACTCCGACAACATACTAACAGTTTCCGGCATTGGCGTCTACAACGGGTCGGCTTTGGTTTCTTATATTGAGGTGCTGACGAGGTGCTTGAGATTTGTCAGCGTGATGGGCTTTTGCTATGGCGGGAAGGCGGGGAGAGAAGTAGCGGCATCACCAGCAGCGGTGGTGGCGCTGCCGTCGGTGAAGGTGAGCAGCGGCGGGAGCGAGTGCACGATATGTAAAGAGGAGATGAGAGAGGACAGAGACGTGTGTGAGCTGCCGTGCCGGCATTTGTTTCACTGGATGTGTATCTTGCGGTGGCTGAGGAAGAGGAACACTTGTCCGTGCTGCCGGTTTACGCTTCCCACTGACGATGTGTTCGGGGAGATCCAACGGCTGTGGGAGGTTTTGGTTAAGATGGGTGAGAAGGAATTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

275

Amino Acids

30.78

Weight (kDa)

7.64

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	203 - 246	1.4e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	204 - 246	2.2e-13	Ring finger domain
zf-C3HC4_2	PF13923	204 - 245	5.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	204 - 232	7.5e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	387
AciI	CCGC	9 cut(s)	166, 275, 528, 536, 551, 566, 600, 603, 700
AclWI	GGATC	1 cut(s)	766
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	339, 407
AflIII	ACRYGT	2 cut(s)	280, 651
AjiI	CACGTC	1 cut(s)	652
AluBI	AGCT	1 cut(s)	661
AluI	AGCT	1 cut(s)	661
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	3 cut(s)	122, 291, 642
Alw44I	GTGCAC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	766
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	613
ApeKI	GCWGC	6 cut(s)	35, 563, 577, 597, 661, 732
ApoI	RAATTY	1 cut(s)	390
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AspLEI	GCGC	2 cut(s)	387, 577
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	7 cut(s)	43, 67, 101, 549, 598, 604, 818
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	6 cut(s)	22, 564, 575, 609, 648, 719
BccI	CCATC	6 cut(s)	35, 92, 114, 149, 505, 796
BceAI	ACGGC	4 cut(s)	36, 565, 649, 794
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	122, 291, 642
BfoI	RGCGCY	1 cut(s)	578
BglI	GCCNNNNNGGC	1 cut(s)	670
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	8 cut(s)	36, 552, 564, 578, 598, 601, 662, 733
BlsI	GCNGC	8 cut(s)	37, 553, 565, 579, 599, 602, 663, 734
Bme1390I	CCNGG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	291
BsaXI	ACNNNNNCTCC	8 cut(s)	104, 134, 144, 174, 206, 236, 290, 320
Bse118I	RCCGGY	2 cut(s)	669, 735
Bse1I	ACTGG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	692
BseGI	GGATG	3 cut(s)	84, 141, 693
BseJI	GATNNNNATC	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	81, 698
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	9 cut(s)	112, 119, 124, 191, 209, 214, 308, 311, 644
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	6 cut(s)	22, 564, 575, 609, 648, 719
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	4 cut(s)	353, 432, 670, 736
BsmAI	GTCTC	3 cut(s)	122, 291, 642
BsmBI	CGTCTC	2 cut(s)	122, 642
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	2 cut(s)	70, 771
BspACI	CCGC	9 cut(s)	166, 275, 528, 536, 551, 566, 600, 603, 700
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	80, 699
BspFNI	CGCG	1 cut(s)	387
BspPI	GGATC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	669, 735
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	2 cut(s)	669, 735
BssMI	GATC	2 cut(s)	70, 771
BssNI	GRCGYC	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	116, 427
Bst6I	CTCTTC	2 cut(s)	152, 707
BstACI	GRCGYC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	2 cut(s)	67, 707
BstF5I	GGATG	3 cut(s)	84, 141, 693
BstFNI	CGCG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	2 cut(s)	387, 577
BstKTI	GATC	2 cut(s)	73, 774
BstMAI	GTCTC	3 cut(s)	122, 291, 642
BstMBI	GATC	2 cut(s)	70, 771
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 365, 513, 560, 572, 606, 670
BstSCI	CCNGG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	617
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	6 cut(s)	22, 564, 575, 609, 648, 719
BstX2I	RGATCY	2 cut(s)	70, 771
BstYI	RGATCY	2 cut(s)	70, 771
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	84, 141, 693
BtsIMutI	CAGTG	2 cut(s)	682, 750
Cac8I	GCNNGC	1 cut(s)	671
CfoI	GCGC	2 cut(s)	387, 577
Cfr10I	RCCGGY	2 cut(s)	669, 735
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	338, 406
CspCI	CAANNNNNGTGG	2 cut(s)	764, 799
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	8 cut(s)	35, 44, 359, 458, 516, 661, 706, 781
CviKI_1	RGCY	8 cut(s)	35, 44, 359, 458, 516, 661, 706, 781
CviQI	GTAC	2 cut(s)	338, 406
DdeI	CTNAG	2 cut(s)	67, 707
DpnI	GATC	2 cut(s)	72, 773
DpnII	GATC	2 cut(s)	70, 771
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	152, 707
EarI	CTCTTC	2 cut(s)	152, 707
Eco31I	GGTCTC	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	122, 642
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 419, 471, 525, 622
FatI	CATG	1 cut(s)	30
FauI	CCCGC	4 cut(s)	282, 521, 529, 596
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	8 cut(s)	36, 552, 564, 578, 598, 601, 662, 733
FokI	GGATG	3 cut(s)	71, 128, 700
Fsp4HI	GCNGC	8 cut(s)	36, 552, 564, 578, 598, 601, 662, 733
GlaI	GCGC	2 cut(s)	386, 576
GluI	GCNGC	8 cut(s)	36, 552, 564, 578, 598, 601, 662, 733
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	4 cut(s)	353, 432, 670, 736
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	387, 577
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	385, 575
HinP1I	GCGC	2 cut(s)	385, 575
HinfI	GANTC	2 cut(s)	196, 305
HpaII	CCGG	4 cut(s)	353, 432, 670, 736
HphI	GGTGA	7 cut(s)	43, 67, 101, 549, 598, 604, 818
Hpy166II	GTNNAC	4 cut(s)	340, 445, 615, 741
Hpy188I	TCNGA	3 cut(s)	70, 290, 412
Hpy8I	GTNNAC	4 cut(s)	340, 445, 615, 741
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	526, 583, 805
HpyCH4III	ACNGT	2 cut(s)	116, 427
HpyCH4IV	ACGT	2 cut(s)	280, 651
HpyCH4V	TGCA	2 cut(s)	261, 615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 365, 513, 560, 572, 606, 670
HpyF3I	CTNAG	2 cut(s)	67, 707
HpySE526I	ACGT	2 cut(s)	280, 651
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	385, 575
KroI	GCCGGC	1 cut(s)	669
KroNI	GCCGGC	1 cut(s)	671
Kzo9I	GATC	2 cut(s)	70, 771
LmnI	GCTCC	2 cut(s)	321, 606
LpnPI	CCDG	9 cut(s)	26, 271, 356, 366, 445, 573, 670, 683, 749
Lsp1109I	GCAGC	6 cut(s)	22, 564, 575, 609, 648, 719
LweI	GCATC	1 cut(s)	563
MaeII	ACGT	2 cut(s)	280, 651
MalI	GATC	2 cut(s)	72, 773
MboI	GATC	2 cut(s)	70, 771
MboII	GAAGA	3 cut(s)	17, 139, 724
MflI	RGATCY	2 cut(s)	70, 771
MhlI	GDGCHC	1 cut(s)	617
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	2 cut(s)	390, 815
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	190, 299
MmeI	TCCRAC	2 cut(s)	435, 799
Mox20I	TGGCCA	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	395, 798
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	566, 600
MspI	CCGG	4 cut(s)	353, 432, 670, 736
MspR9I	CCNGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	7 cut(s)	41, 365, 513, 560, 572, 606, 670
NaeI	GCCGGC	1 cut(s)	671
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	70, 771
NgoMIV	GCCGGC	1 cut(s)	669
NlaIII	CATG	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	671
PkrI	GCNGC	8 cut(s)	37, 553, 565, 579, 599, 602, 663, 734
PleI	GAGTC	2 cut(s)	190, 299
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	190, 299
Ppu21I	YACGTR	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	70, 771
RsaI	GTAC	2 cut(s)	339, 407
RsaNI	GTAC	2 cut(s)	338, 406
SaqAI	TTAA	2 cut(s)	395, 798
SatI	GCNGC	8 cut(s)	36, 552, 564, 578, 598, 601, 662, 733
Sau3AI	GATC	2 cut(s)	70, 771
SchI	GAGTC	2 cut(s)	190, 299
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	2 cut(s)	390, 815
SsiI	CCGC	9 cut(s)	166, 275, 528, 536, 551, 566, 600, 603, 700
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	116, 427
TaiI	ACGT	2 cut(s)	283, 654
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	390, 815
TatI	WGTACW	2 cut(s)	337, 405
TauI	GCSGC	2 cut(s)	554, 603
Tru1I	TTAA	2 cut(s)	395, 798
Tru9I	TTAA	2 cut(s)	395, 798
TscAI	CASTG	2 cut(s)	689, 757
TseI	GCWGC	6 cut(s)	35, 563, 577, 597, 661, 732
TspGWI	ACGGA	2 cut(s)	298, 717
TspRI	CASTG	2 cut(s)	689, 757
VneI	GTGCAC	1 cut(s)	613
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.