pycom12g18320

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0009384
Physical Location & Seq
Forward (+)
20493523 .. 20496468
2946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1278 bp
ATGGCGGAATCGACCCCAATATACTTGAGCATTATAGCTTTTTTCTGTACTGTTGGAGCCATGGCTTTGGCCATCATGCATATCTACAGGCACCTCATCAATTACACTGAACCCACTTACCAGAGATACATTGTCCGCATCATCTTCATGGTTCCGATATATGCGTTGATGTCATTCTTATCCCTTGTCATTCCTGCTGGTTCAATCTACTTTAATTCCATTAGAGAAGCCTATGAAGCTTGGGTCATTTATAATTTTTTATCGTTGTGCTTGGCATGGGTTGGTGGTCCAGGATCTGTGGTTCTTAGTTTAAGCGGTAGGGTTCTAAAGCCTTCCGTGGTTCTGATGACATGTTGCCTCCCTCCCATACCCCTGGATGGGCGCTTTATACGTAGGTGCAAACAAGGATGTTTGCAGTTTGTGATCCTGAACGAGCCTGTATTAGCTGTTGTTACACTCATACTTTATGCAAAGGGGAAATATGCAGATGGAAATTTCAGTCCAAGACAGACATACCTGTATCTCACTATTATCTACACAATCTCATACACAACAGCTCTCTATGCGTTGGCGTTGTTTTACTTTGCTTGCAGAGATCTACTCCAGCCTTTCAATCCAGTTCCAAAGTTTATTATAATCAAATCTGTTGTTTTCCTCACTTATTGGCAGGGTGTGTTGGTCTTCCTTGCTGCGAAATCTGGCTTGATAAAGAATGCAGAGGATGCAGCTCAGTATCAAAATTTCATAATTTGTGTTGAGATGCTTATCGCTGCTATTGGTCATTTATATGCATTTCCTTACAAGGAGTATGCTGGTGCAAATATTGGCGGGCCTCGAGATCTGACTGGAAGCCTATCGCATGCCGTAAAGTTGAATGACTTTTACCATGATACAGTGCACCAGTTTGCCCCTACTTATCATGATTATGTACTGTACAACCCTAGTGAGGGTGACGAGGGAAAGAGGAAATATCGGTCACGCACCTTTGTGCCGACTGGCCCAGAGATGGATGCTGTCAGAAGAAACAAGAACATGTTTGGGAACAAGATAGATGACATACAGCTTTCCAGTCTATCATCTTCTAGTGCAAGCACTCCGAATAATACTGGCCCAATACCTGAGTCTAAGAATTCAGATGCAATGAAGTCTTCCCTTCTTGTTGACAACTTGAATTCTGCATCAGTGCCGTATGACATGTCGCTCATCGACTTAGACCTGAACGGTTACCCCTCAAAGGTTCCTTCAGCAAATGAAGGTGGCACTAGGCGACAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

426

Amino Acids

47.44

Weight (kDa)

8.6

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 270 2.8e-89 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 252, 635
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 4 cut(s) 5, 136, 315, 828
AclWI GGATC 2 cut(s) 301, 418
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 4 cut(s) 493, 739, 1129, 1171
AcuI CTGAAG 1 cut(s) 1227
AfaI GTAC 3 cut(s) 49, 930, 935
AfiI CCNNNNNNNGG 6 cut(s) 377, 378, 946, 947, 1006, 1234
AflIII ACRYGT 3 cut(s) 350, 1032, 1194
AgsI TTSAA 4 cut(s) 204, 613, 874, 1171
AjnI CCWGG 2 cut(s) 289, 372
AleI CACNNNNGTG 1 cut(s) 986
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 6 cut(s) 38, 239, 446, 557, 728, 1063
AluI AGCT 6 cut(s) 38, 239, 446, 557, 728, 1063
Alw21I GWGCWC 1 cut(s) 900
Alw44I GTGCAC 1 cut(s) 896
AlwI GGATC 2 cut(s) 301, 418
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 834
AoxI GGCC 4 cut(s) 69, 830, 997, 1108
ApaLI GTGCAC 1 cut(s) 896
ApeKI GCWGC 3 cut(s) 689, 725, 770
ApoI RAATTY 4 cut(s) 493, 739, 1129, 1171
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 4 cut(s) 287, 830, 998, 1109
AsuHPI GGTGA 1 cut(s) 962
AvaI CYCGRG 1 cut(s) 834
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 900
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 90
BbsI GAAGAC 2 cut(s) 673, 1140
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 3 cut(s) 676, 737, 757
BccI CCATC 4 cut(s) 80, 371, 482, 1000
BceAI ACGGC 2 cut(s) 848, 1171
BciT130I CCWGG 2 cut(s) 291, 374
BfaI CTAG 3 cut(s) 942, 1083, 1263
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 385
BglII AGATCT 2 cut(s) 595, 838
BisI GCNGC 3 cut(s) 690, 726, 771
BlsI GCNGC 3 cut(s) 691, 727, 772
Bme1390I CCNGG 2 cut(s) 291, 374
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 834
BmgT120I GGNCC 4 cut(s) 287, 830, 998, 1109
BmiI GGNNCC 4 cut(s) 58, 92, 153, 1239
BmrFI CCNGG 2 cut(s) 291, 374
BmsI GCATC 6 cut(s) 147, 712, 750, 1000, 1126, 1187
BpiI GAAGAC 2 cut(s) 673, 1140
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 764
BsaJI CCNNGG 3 cut(s) 60, 336, 372
Bsc4I CCNNNNNNNGG 6 cut(s) 377, 378, 946, 947, 1006, 1234
Bse1I ACTGG 6 cut(s) 617, 850, 901, 1000, 1068, 1111
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 764
BseBI CCWGG 2 cut(s) 291, 374
BseDI CCNNGG 3 cut(s) 60, 336, 372
BseGI GGATG 4 cut(s) 382, 413, 727, 1015
BseJI GATNNNNATC 1 cut(s) 764
BseLI CCNNNNNNNGG 6 cut(s) 377, 378, 946, 947, 1006, 1234
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 2 cut(s) 743, 1110
BseNI ACTGG 6 cut(s) 617, 850, 901, 1000, 1068, 1111
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 676, 737, 757
BshFI GGCC 4 cut(s) 71, 832, 999, 1110
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 900
BsiHKCI CYCGRG 1 cut(s) 834
BslI CCNNNNNNNGG 6 cut(s) 377, 378, 946, 947, 1006, 1234
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 4 cut(s) 71, 832, 999, 1110
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 900
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 4 cut(s) 293, 423, 595, 838
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 4 cut(s) 5, 136, 315, 828
BspANI GGCC 4 cut(s) 71, 832, 999, 1110
BspCNI CTCAG 2 cut(s) 742, 1111
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 58, 92, 153, 1239
BspPI GGATC 2 cut(s) 301, 418
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 6 cut(s) 617, 850, 901, 1000, 1068, 1111
BssECI CCNNGG 3 cut(s) 60, 336, 372
BssMI GATC 4 cut(s) 293, 423, 595, 838
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 291, 374
Bst4CI ACNGT 4 cut(s) 52, 895, 933, 1223
BstAPI GCANNNNNTGC 1 cut(s) 722
BstAUI TGTACA 1 cut(s) 933
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 589, 830, 861, 1090
BstDEI CTNAG 5 cut(s) 305, 729, 1119, 1125, 1210
BstDSI CCRYGG 2 cut(s) 60, 336
BstEII GGTNACC 1 cut(s) 1223
BstF5I GGATG 4 cut(s) 382, 413, 727, 1015
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 4 cut(s) 296, 426, 598, 841
BstMBI GATC 4 cut(s) 293, 423, 595, 838
BstMWI GCNNNNNNNGC 3 cut(s) 236, 563, 722
BstNI CCWGG 2 cut(s) 291, 374
BstNSI RCATGY 4 cut(s) 354, 863, 1036, 1198
BstPI GGTNACC 1 cut(s) 1223
BstSCI CCNGG 2 cut(s) 289, 372
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 900
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 676, 737, 757
BstV2I GAAGAC 2 cut(s) 673, 1140
BstX2I RGATCY 3 cut(s) 293, 595, 838
BstXI CCANNNNNNTGG 2 cut(s) 67, 373
BstYI RGATCY 3 cut(s) 293, 595, 838
BsuRI GGCC 4 cut(s) 71, 832, 999, 1110
BtgI CCRYGG 2 cut(s) 60, 336
BtsCI GGATG 4 cut(s) 382, 413, 727, 1015
BtsIMutI CAGTG 3 cut(s) 105, 900, 1188
Cac8I GCNNGC 4 cut(s) 589, 830, 861, 1090
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 919
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 4 cut(s) 287, 830, 998, 1109
Csp6I GTAC 3 cut(s) 48, 929, 934
CviQI GTAC 3 cut(s) 48, 929, 934
DdeI CTNAG 5 cut(s) 305, 729, 1119, 1125, 1210
DpnI GATC 4 cut(s) 295, 425, 597, 840
DpnII GATC 4 cut(s) 293, 423, 595, 838
EaeI YGGCCR 1 cut(s) 69
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 834
Eco91I GGTNACC 1 cut(s) 1223
EcoO65I GGTNACC 1 cut(s) 1223
EcoRI GAATTC 2 cut(s) 1129, 1171
EcoRII CCWGG 2 cut(s) 289, 372
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 2 cut(s) 81, 793
ErhI CCWWGG 1 cut(s) 60
FauI CCCGC 1 cut(s) 821
Fnu4HI GCNGC 3 cut(s) 690, 726, 771
FokI GGATG 4 cut(s) 389, 420, 734, 1022
Fsp4HI GCNGC 3 cut(s) 690, 726, 771
FspBI CTAG 3 cut(s) 942, 1083, 1263
GlaI GCGC 1 cut(s) 383
GluI GCNGC 3 cut(s) 690, 726, 771
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 4 cut(s) 71, 832, 999, 1110
HhaI GCGC 1 cut(s) 384
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 2 cut(s) 8, 1121
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 2 cut(s) 898, 1162
Hpy188I TCNGA 6 cut(s) 156, 345, 843, 1019, 1098, 1135
Hpy188III TCNNGA 3 cut(s) 427, 836, 920
Hpy8I GTNNAC 2 cut(s) 898, 1162
HpyAV CCTTC 4 cut(s) 342, 1163, 1247, 1251
HpyCH4III ACNGT 4 cut(s) 52, 895, 933, 1223
HpyCH4IV ACGT 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 563, 722
HpyF3I CTNAG 5 cut(s) 305, 729, 1119, 1125, 1210
HpySE526I ACGT 1 cut(s) 391
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 293, 423, 595, 838
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 676, 737, 757
LweI GCATC 6 cut(s) 147, 712, 750, 1000, 1126, 1187
MaeI CTAG 3 cut(s) 942, 1083, 1263
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 4 cut(s) 451, 950, 975, 1223
MalI GATC 4 cut(s) 295, 425, 597, 840
MboI GATC 4 cut(s) 293, 423, 595, 838
MboII GAAGA 5 cut(s) 136, 673, 1032, 1071, 1140
MflI RGATCY 3 cut(s) 293, 595, 838
MhlI GDGCHC 1 cut(s) 900
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 8 cut(s) 100, 214, 253, 493, 739, 747, 1129, 1171
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 1130
MmeI TCCRAC 1 cut(s) 34
Mox20I TGGCCA 1 cut(s) 71
Mph1103I ATGCAT 2 cut(s) 81, 793
MscI TGGCCA 1 cut(s) 71
MseI TTAA 2 cut(s) 213, 311
MslI CAYNNNNRTG 4 cut(s) 146, 786, 924, 986
Msp20I TGGCCA 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 291, 374
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 2 cut(s) 291, 374
MwoI GCNNNNNNNGC 3 cut(s) 236, 563, 722
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 293, 423, 595, 838
NlaIV GGNNCC 4 cut(s) 58, 92, 153, 1239
NmuCI GTSAC 2 cut(s) 950, 975
NsiI ATGCAT 2 cut(s) 81, 793
NspI RCATGY 4 cut(s) 354, 863, 1036, 1198
OliI CACNNNNGTG 1 cut(s) 986
PaeI GCATGC 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 834
PagI TCATGA 1 cut(s) 919
PciI ACATGT 3 cut(s) 350, 1032, 1194
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 3 cut(s) 691, 727, 772
PleI GAGTC 1 cut(s) 1129
PpsI GAGTC 1 cut(s) 1129
Ppu21I YACGTR 1 cut(s) 392
PscI ACATGT 3 cut(s) 350, 1032, 1194
PsiI TTATAA 2 cut(s) 252, 635
Psp6I CCWGG 2 cut(s) 289, 372
PspEI GGTNACC 1 cut(s) 1223
PspGI CCWGG 2 cut(s) 289, 372
PspN4I GGNNCC 4 cut(s) 58, 92, 153, 1239
PspPI GGNCC 4 cut(s) 287, 830, 998, 1109
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 3 cut(s) 293, 595, 838
RsaI GTAC 3 cut(s) 49, 930, 935
RsaNI GTAC 3 cut(s) 48, 929, 934
RseI CAYNNNNRTG 4 cut(s) 146, 786, 924, 986
SaqAI TTAA 2 cut(s) 213, 311
SatI GCNGC 3 cut(s) 690, 726, 771
Sau3AI GATC 4 cut(s) 293, 423, 595, 838
Sau96I GGNCC 4 cut(s) 287, 830, 998, 1109
SchI GAGTC 1 cut(s) 1130
ScrFI CCNGG 2 cut(s) 291, 374
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 6 cut(s) 147, 712, 750, 1000, 1126, 1187
SfcI CTRYAG 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 834
SinI GGWCC 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 834
SmiMI CAYNNNNRTG 4 cut(s) 146, 786, 924, 986
SmlI CTYRAG 2 cut(s) 25, 834
SmoI CTYRAG 2 cut(s) 25, 834
SnaBI TACGTA 1 cut(s) 392
SphI GCATGC 1 cut(s) 863
Sse9I AATT 8 cut(s) 100, 214, 253, 493, 739, 747, 1129, 1171
SsiI CCGC 4 cut(s) 5, 136, 315, 828
SspI AATATT 1 cut(s) 823
SspMI CTAG 3 cut(s) 942, 1083, 1263
StyD4I CCNGG 2 cut(s) 289, 372
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 4 cut(s) 52, 895, 933, 1223
TaiI ACGT 1 cut(s) 394
TaqI TCGA 3 cut(s) 11, 835, 1206
TaqII GACCGA 1 cut(s) 963
TasI AATT 8 cut(s) 100, 214, 253, 493, 739, 747, 1129, 1171
TatI WGTACW 3 cut(s) 47, 928, 933
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 213, 311
Tru9I TTAA 2 cut(s) 213, 311
TscAI CASTG 3 cut(s) 112, 900, 1188
TseFI GTSAC 2 cut(s) 950, 975
TseI GCWGC 3 cut(s) 689, 725, 770
Tsp45I GTSAC 2 cut(s) 950, 975
TspDTI ATGAA 5 cut(s) 136, 249, 733, 1157, 1266
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 3 cut(s) 112, 900, 1188
VneI GTGCAC 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 4 cut(s) 493, 739, 1129, 1171
XceI RCATGY 4 cut(s) 354, 863, 1036, 1198
XhoI CTCGAG 1 cut(s) 834
XspI CTAG 3 cut(s) 942, 1083, 1263
Zsp2I ATGCAT 2 cut(s) 81, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.