Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444539 .. 21447441

Gene Structure 2903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGAACCGCACGGACCCGTCGGCGAAGAACATAAGGGGAACGAACCCCCAGAATCTGGTGGAGAAGATCGATCCCCGTCTACGGACGAAGATATACCAGAACACGTACTGGAAGGAGCAGTGCTTCGGGTTGACGGCCGAAACCCTAGTCGACAAAGCCATGGAGCTCGACCACATCGGCGGCACCTTCGGGGGCAACCGCAAGCCCACGCCTTTCATGTGCCTCGTGATGAAGATGCTTCAGATCCAGCCGGAGAGGGAGATCGTTATCGAGTTCATCAAAAACGACGATTACAAGTACGTTCGGATACTTGGTGCATTTTATTTGCGGCTTACGGGAACTGATACTGATGCATACCAGTACCTAGAGCCTTTGTACAATGACTATCGGAAGTTGAGGAGGAAACTGCCTGATGGGAATTTTACCTTGACGCATGTGGATGAGGTTATTGATGAACTTCTCACAAAAGATTACTCATGTGACATTGCAATGCCACGAATTAAAAAAAGATGGACTCTCGAAGCAACTGGTTCATTGGAACTCAGGAAAAGTGCTTTGGAAGAGGACTTTGAGGAGGAGGAAGAGAAAGAAGAGAATGATCAAGTTGATGTAATGGATGAAGATGTCCATGATAGGGATTATTATCGTGGTCGAAGCCCTGCCAGGGAAAGAGATAGGGATAGAAGACGCGACAGTCACAGATACAGGGACCGAGATTATGACAGAGATTATGAAAGGGATAGAGATTATGACAGGGAACGTGGACGTGAAAGAGAGAGGGACAGAGACAGGGATAGGGATAGGGATCGAGACCATTATCGGCTTAGAGACGAAAAGGATTATGGTCATGATAGGGATAGGGATAGGGATAGAGACAGGCGAGGGAGGGATCGTGGCAGGAGGAGGAGCCATTCAAGGAGCAGAAGTCGTAGTAGAGATCGTGATGGTGGGGAAAGAGATCGCAGGAGACATGCCCGCAGCATTAGTCCCAGGAGACCTGATCGTGAGGAACCGAAGAAGAAGAAAGAAAAGAAGAAGGAGAAGAAGGATGATGGCACAGACCATCCGGATCCAGAGATTGCTGAAGCAAACAGACTCCGAGCATCTCTTGGGTTGAAACCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

378

Amino Acids

45.73

Weight (kDa)

9.02

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	10 - 176	3.7e-63	PRP38 family
PRP38_assoc	PF12871	183 - 272	8.1e-08	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	82, 153
AccII	CGCG	1 cut(s)	693
AccIII	TCCGGA	1 cut(s)	1069
AciI	CCGC	5 cut(s)	10, 183, 202, 331, 979
AclWI	GGATC	6 cut(s)	68, 241, 816, 900, 1067, 1080
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	227, 1107
AfaI	GTAC	4 cut(s)	110, 302, 365, 380
AfiI	CCNNNNNNNGG	4 cut(s)	58, 84, 637, 667
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	918, 1120
AjiI	CACGTC	1 cut(s)	770
AjnI	CCWGG	2 cut(s)	665, 992
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	6 cut(s)	783, 807, 825, 870, 964, 991
AlwI	GGATC	6 cut(s)	68, 241, 816, 900, 1067, 1080
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	1069
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	981
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspS9I	GGNCC	2 cut(s)	16, 712
AvaII	GGWCC	2 cut(s)	16, 712
BamHI	GGATCC	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	993
BccI	CCATC	5 cut(s)	410, 507, 941, 1049, 1074
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	667, 994
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	6 cut(s)	783, 807, 825, 870, 964, 991
BfaI	CTAG	2 cut(s)	149, 368
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	184, 332, 982
BlsI	GCNGC	3 cut(s)	185, 333, 983
Bme1390I	CCNGG	2 cut(s)	667, 994
Bme18I	GGWCC	2 cut(s)	16, 712
BmgBI	CACGTC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	16, 712
BmiI	GGNNCC	6 cut(s)	18, 187, 713, 911, 1014, 1074
BmrFI	CCNGG	2 cut(s)	667, 994
BmsI	GCATC	3 cut(s)	228, 343, 1115
BpiI	GAAGAC	1 cut(s)	694
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	108
BsaBI	GATNNNNATC	3 cut(s)	269, 645, 807
BsaI	GGTCTC	2 cut(s)	807, 991
BsaJI	CCNNGG	3 cut(s)	162, 666, 992
BsaWI	WCCGGW	1 cut(s)	1069
BsaXI	ACNNNNNCTCC	4 cut(s)	880, 910, 913, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 84, 637, 667
Bse1I	ACTGG	3 cut(s)	116, 361, 535
Bse3DI	GCAATG	2 cut(s)	486, 498
Bse8I	GATNNNNATC	3 cut(s)	269, 645, 807
BseAI	TCCGGA	1 cut(s)	1069
BseBI	CCWGG	2 cut(s)	667, 994
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	162, 666, 992
BseGI	GGATG	4 cut(s)	448, 625, 1057, 1066
BseJI	GATNNNNATC	3 cut(s)	269, 645, 807
BseLI	CCNNNNNNNGG	4 cut(s)	58, 84, 637, 667
BseMI	GCAATG	2 cut(s)	486, 498
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	3 cut(s)	116, 361, 535
BseRI	GAGGAG	5 cut(s)	415, 590, 593, 919, 922
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	993
Bsh1236I	CGCG	1 cut(s)	693
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	254, 1070
BslFI	GGGAC	3 cut(s)	725, 797, 975
BslI	CCNNNNNNNGG	4 cut(s)	58, 84, 637, 667
BsmAI	GTCTC	6 cut(s)	783, 807, 825, 870, 964, 991
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	3 cut(s)	725, 797, 975
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	2 cut(s)	807, 991
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	1069
Bsp1407I	TGTACA	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	10, 183, 202, 331, 979
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	558
BspDI	ATCGAT	1 cut(s)	72
BspEI	TCCGGA	1 cut(s)	1069
BspFNI	CGCG	1 cut(s)	693
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	6 cut(s)	18, 187, 713, 911, 1014, 1074
BspPI	GGATC	6 cut(s)	68, 241, 816, 900, 1067, 1080
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	2 cut(s)	807, 991
BsrDI	GCAATG	2 cut(s)	486, 498
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	116, 361, 535
BssECI	CCNNGG	3 cut(s)	162, 666, 992
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	667, 994
Bst4CI	ACNGT	1 cut(s)	698
Bst6I	CTCTTC	3 cut(s)	558, 579, 588
BstAUI	TGTACA	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	206, 979
BstDEI	CTNAG	2 cut(s)	545, 827
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	4 cut(s)	448, 625, 1057, 1066
BstFNI	CGCG	1 cut(s)	693
BstMAI	GTCTC	6 cut(s)	783, 807, 825, 870, 964, 991
BstMCI	CGRYCG	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	667, 994
BstNSI	RCATGY	2 cut(s)	440, 977
BstSCI	CCNGG	2 cut(s)	665, 992
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	993
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	2 cut(s)	246, 1072
BstYI	RGATCY	2 cut(s)	246, 1072
BstZI	CGGCCG	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	770
BtsCI	GGATG	4 cut(s)	448, 625, 1057, 1066
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	206, 979
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	850
Cfr13I	GGNCC	2 cut(s)	16, 712
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	2 cut(s)	442, 699
Csp6I	GTAC	4 cut(s)	109, 301, 364, 379
CviAII	CATG	7 cut(s)	163, 220, 437, 480, 632, 851, 974
CviQI	GTAC	4 cut(s)	109, 301, 364, 379
DdeI	CTNAG	2 cut(s)	545, 827
DrdI	GACNNNNNNGTC	1 cut(s)	696
DseDI	GACNNNNNNGTC	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	558, 579, 588
EarI	CTCTTC	3 cut(s)	558, 579, 588
Ecl136II	GAGCTC	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	2 cut(s)	807, 991
Eco47I	GGWCC	2 cut(s)	16, 712
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	227, 1107
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	665, 992
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	7 cut(s)	166, 223, 440, 483, 635, 854, 977
FaqI	GGGAC	3 cut(s)	725, 797, 975
FatI	CATG	7 cut(s)	162, 219, 436, 479, 631, 850, 973
FauI	CCCGC	1 cut(s)	986
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	2 cut(s)	82, 153
Fnu4HI	GCNGC	3 cut(s)	184, 332, 982
FokI	GGATG	4 cut(s)	455, 632, 1053, 1064
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	184, 332, 982
FspBI	CTAG	2 cut(s)	149, 368
GluI	GCNGC	3 cut(s)	184, 332, 982
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	2 cut(s)	254, 1070
HgaI	GACGC	2 cut(s)	442, 699
Hin1II	CATG	7 cut(s)	166, 223, 440, 483, 635, 854, 977
HincII	GTYRAC	2 cut(s)	135, 154
HindII	GTYRAC	2 cut(s)	135, 154
HinfI	GANTC	3 cut(s)	55, 517, 1098
HpaII	CCGG	2 cut(s)	254, 1070
Hpy166II	GTNNAC	4 cut(s)	83, 135, 154, 767
Hpy188I	TCNGA	4 cut(s)	246, 309, 393, 1103
Hpy188III	TCNNGA	9 cut(s)	229, 521, 547, 812, 851, 944, 1007, 1070, 1076
Hpy8I	GTNNAC	4 cut(s)	83, 135, 154, 767
Hpy99I	CGWCG	2 cut(s)	25, 293
HpyAV	CCTTC	4 cut(s)	109, 199, 1033, 1042
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4IV	ACGT	4 cut(s)	107, 303, 763, 769
HpyCH4V	TGCA	3 cut(s)	320, 356, 491
HpyF3I	CTNAG	2 cut(s)	545, 827
HpySE526I	ACGT	4 cut(s)	107, 303, 763, 769
Hsp92II	CATG	7 cut(s)	166, 223, 440, 483, 635, 854, 977
Kpn2I	TCCGGA	1 cut(s)	1069
Ksp22I	TGATCA	1 cut(s)	601
LmnI	GCTCC	4 cut(s)	118, 166, 909, 921
Lsp1109I	GCAGC	1 cut(s)	993
LweI	GCATC	3 cut(s)	228, 343, 1115
MaeI	CTAG	2 cut(s)	149, 368
MaeII	ACGT	4 cut(s)	107, 303, 763, 769
MaeIII	GTNAC	2 cut(s)	482, 698
MflI	RGATCY	2 cut(s)	246, 1072
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	421, 501
MlyI	GAGTC	2 cut(s)	511, 1092
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	1069
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	2 cut(s)	441, 491
MspI	CCGG	2 cut(s)	254, 1070
MspR9I	CCNGG	2 cut(s)	667, 994
MvaI	CCWGG	2 cut(s)	667, 994
MvnI	CGCG	1 cut(s)	693
NcoI	CCATGG	1 cut(s)	162
NlaIII	CATG	7 cut(s)	166, 223, 440, 483, 635, 854, 977
NlaIV	GGNNCC	6 cut(s)	18, 187, 713, 911, 1014, 1074
NmuCI	GTSAC	2 cut(s)	482, 698
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	440, 977
PagI	TCATGA	1 cut(s)	850
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	185, 333, 983
PleI	GAGTC	2 cut(s)	511, 1092
PpsI	GAGTC	2 cut(s)	511, 1092
Ppu21I	YACGTR	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	665, 992
PspGI	CCWGG	2 cut(s)	665, 992
PspN4I	GGNNCC	6 cut(s)	18, 187, 713, 911, 1014, 1074
PspPI	GGNCC	2 cut(s)	16, 712
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	246, 1072
RsaI	GTAC	4 cut(s)	110, 302, 365, 380
RsaNI	GTAC	4 cut(s)	109, 301, 364, 379
RseI	CAYNNNNRTG	2 cut(s)	441, 491
SacI	GAGCTC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	3 cut(s)	184, 332, 982
Sau96I	GGNCC	2 cut(s)	16, 712
SchI	GAGTC	2 cut(s)	511, 1092
ScrFI	CCNGG	2 cut(s)	667, 994
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	3 cut(s)	228, 343, 1115
SinI	GGWCC	2 cut(s)	16, 712
SmiMI	CAYNNNNRTG	2 cut(s)	441, 491
Sse9I	AATT	2 cut(s)	421, 501
SsiI	CCGC	5 cut(s)	10, 183, 202, 331, 979
SspMI	CTAG	2 cut(s)	149, 368
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	665, 992
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	698
TaiI	ACGT	4 cut(s)	110, 306, 766, 772
TaqI	TCGA	7 cut(s)	72, 153, 171, 273, 522, 655, 811
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	2 cut(s)	421, 501
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	2 cut(s)	186, 334
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	482, 698
TseI	GCWGC	1 cut(s)	981
Tsp45I	GTSAC	2 cut(s)	482, 698
TspDTI	ATGAA	7 cut(s)	208, 248, 268, 471, 525, 636, 750
TspGWI	ACGGA	2 cut(s)	29, 100
TspRI	CASTG	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	16, 712
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	2 cut(s)	440, 977
XmiI	GTMKAC	2 cut(s)	82, 153
XspI	CTAG	2 cut(s)	149, 368
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.