Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21565665 .. 21566630

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTTAGTATCGATCGATCGAATTAAGGTGATAGCAGCTACCAATCGAGCTGACATCCTCGACCCTGCTCTTATGCGTTCTGGTCGGTTGGATCGAAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATTTTGCAGATTCACTCAAGAAAGATGAATGTTCATCCGGATGTCAATTTCGAAGAATTAGCTCGCTCAACCGATGACTTCAACGGGGCACAGCTAAAAGCTGTATGCGTAGAGGCAGGCATGCTTGCCCTTCGTCGTGATGCCACAGAGGTGAACCACGAGGACTTTAACGAGGGCATTATCCAAGTTCAGGCAAAGAAAAAAGCCAGCCTCAATTATTATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

123

Amino Acids

13.77

Weight (kDa)

6.91

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	8 - 38	3e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	61 - 105	6.4e-16	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010608)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g19870
rosa_chinensis	RchiOBHm_Chr7g0210991 RchiOBHm_Chr7g0228541 RchiOBHm_Chr7g0233871
rosa_multiflora	Rmu_sc0003835.1_g000005 Rmu_ssc0000046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015060 Rroxscaffold_5G00336650
rosa_samantha	Rh1AG079900 Rh1CG074000 Rh4AG142700 Rh5AG364900 Rh5DG148800 Rh5DG239700 Rh6AG367700 Rh7AG215700 Rh7AG402500 Rh7CG459000
rosa_wichuraiana	Rw1G002570 Rw2G045860 Rw6G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	6 cut(s)	41, 53, 137, 203, 235, 242
AluI	AGCT	6 cut(s)	41, 53, 137, 203, 235, 242
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	43, 304
AsuII	TTCGAA	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	142
Bsa29I	ATCGAT	2 cut(s)	14, 18
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	178
BseCI	ATCGAT	2 cut(s)	14, 18
BseGI	GGATG	4 cut(s)	57, 115, 175, 187
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	50
Bsh1285I	CGRYCG	2 cut(s)	18, 22
BshVI	ATCGAT	2 cut(s)	14, 18
BsiEI	CGRYCG	2 cut(s)	18, 22
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	139, 232
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	15, 19, 94
BspDI	ATCGAT	2 cut(s)	14, 18
BspEI	TCCGGA	1 cut(s)	178
BspPI	GGATC	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	192
BssMI	GATC	3 cut(s)	15, 19, 94
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	5 cut(s)	205, 259, 263, 267, 349
BstF5I	GGATG	4 cut(s)	57, 115, 175, 187
BstKTI	GATC	3 cut(s)	18, 22, 97
BstMBI	GATC	3 cut(s)	15, 19, 94
BstMCI	CGRYCG	2 cut(s)	18, 22
BstNSI	RCATGY	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	50
Bsu15I	ATCGAT	2 cut(s)	14, 18
BsuTUI	ATCGAT	2 cut(s)	14, 18
BtsCI	GGATG	4 cut(s)	57, 115, 175, 187
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	5 cut(s)	205, 259, 263, 267, 349
ClaI	ATCGAT	2 cut(s)	14, 18
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	9 cut(s)	5, 41, 53, 137, 203, 235, 242, 347, 351
CviKI_1	RGCY	9 cut(s)	5, 41, 53, 137, 203, 235, 242, 347, 351
DpnI	GATC	3 cut(s)	17, 21, 96
DpnII	GATC	3 cut(s)	15, 19, 94
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	1 cut(s)	265
FaiI	YATR	4 cut(s)	77, 247, 263, 363
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	4 cut(s)	44, 102, 162, 194
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	1 cut(s)	39
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	1 cut(s)	265
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	2 cut(s)	43, 304
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	3 cut(s)	159, 179, 278
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	15, 19, 94
LpnPI	CCDG	6 cut(s)	69, 81, 192, 243, 317, 361
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	367
MalI	GATC	3 cut(s)	17, 21, 96
MboI	GATC	3 cut(s)	15, 19, 94
MboII	GAAGA	2 cut(s)	137, 206
MhlI	GDGCHC	2 cut(s)	139, 232
MluCI	AATT	6 cut(s)	24, 102, 141, 187, 197, 355
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	71, 247, 283, 295, 307, 362
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	2 cut(s)	27, 309
MslI	CAYNNNNRTG	2 cut(s)	180, 290
MspI	CCGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	15, 19, 94
NlaIII	CATG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	40
Ple19I	CGATCG	2 cut(s)	18, 22
Psp124BI	GAGCTC	1 cut(s)	139
PvuI	CGATCG	2 cut(s)	18, 22
RseI	CAYNNNNRTG	2 cut(s)	180, 290
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	27, 309
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	15, 19, 94
SduI	GDGCHC	2 cut(s)	139, 232
SetI	ASST	8 cut(s)	33, 43, 55, 139, 205, 237, 244, 294
SfaNI	GCATC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	180, 290
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	6 cut(s)	24, 102, 141, 187, 197, 355
SspMI	CTAG	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	139
TaqI	TCGA	8 cut(s)	14, 18, 22, 49, 63, 97, 139, 192
TasI	AATT	6 cut(s)	24, 102, 141, 187, 197, 355
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	27, 309
Tru9I	TTAA	2 cut(s)	27, 309
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	164, 182
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.