Rh1AG079900

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010608
Physical Location & Seq
Reverse (-)
13510187 .. 13530793
20607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG079900.1

Sequence Viewer

Length: 636 bp
ATGGTGGTACAGGAGAATGGCCTTCCAGCACCATTGTGGGTTTTGAAAACAATCAAGGAGATGTATCTGCAACCGCATCTGCATAGGCCTGCAGCTTTGGTCAGGTTACATCGTATGATGCGTGAAGATTTGCCAAATGGTATTGTGGATGAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGTAAGAGCTCGGATTTTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGATGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

211

Amino Acids

24.34

Weight (kDa)

5.0

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 117 - 171 2e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 431, 501
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 9, 373
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 4 cut(s) 46, 383, 593, 621
AleI CACNNNNGTG 1 cut(s) 34
AluBI AGCT 5 cut(s) 95, 181, 299, 536, 602
AluI AGCT 5 cut(s) 95, 181, 299, 536, 602
Alw21I GWGCWC 2 cut(s) 538, 630
Alw44I GTGCAC 1 cut(s) 626
AlwI GGATC 2 cut(s) 431, 501
AoxI GGCC 2 cut(s) 19, 86
ApaLI GTGCAC 1 cut(s) 626
ApeKI GCWGC 3 cut(s) 92, 367, 437
AseI ATTAAT 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 3 cut(s) 365, 442, 566
BaeGI GKGCMC 1 cut(s) 630
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 538, 630
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 104, 379, 449
BccI CCATC 1 cut(s) 395
BcnI CCSGG 1 cut(s) 578
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 93, 368, 438
BlsI GCNGC 3 cut(s) 94, 369, 439
Bme1390I CCNGG 1 cut(s) 578
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 2 cut(s) 85, 108
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 578
BsaWI WCCGGW 2 cut(s) 420, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 427
BseGI GGATG 4 cut(s) 154, 456, 514, 586
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 3 cut(s) 104, 379, 449
BsgI GTGCAG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 2 cut(s) 21, 88
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 538, 630
BsiSI CCGG 3 cut(s) 421, 483, 578
BslI CCNNNNNNNGG 1 cut(s) 427
BsnI GGCC 2 cut(s) 21, 88
Bsp1286I GDGCHC 2 cut(s) 538, 630
Bsp143I GATC 2 cut(s) 423, 493
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 21, 88
BspCNI CTCAG 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 2 cut(s) 431, 501
BssMI GATC 2 cut(s) 423, 493
BstC8I GCNNGC 2 cut(s) 90, 604
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 154, 456, 514, 586
BstKTI GATC 2 cut(s) 426, 496
BstMBI GATC 2 cut(s) 423, 493
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 2 cut(s) 376, 385
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 104, 379, 449
BsuRI GGCC 2 cut(s) 21, 88
BtsCI GGATG 4 cut(s) 154, 456, 514, 586
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 90, 604
Csp6I GTAC 2 cut(s) 8, 372
CviAII CATG 1 cut(s) 449
CviJI RGCY 9 cut(s) 21, 88, 95, 181, 299, 334, 405, 536, 602
CviKI_1 RGCY 9 cut(s) 21, 88, 95, 181, 299, 334, 405, 536, 602
CviQI GTAC 2 cut(s) 8, 372
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 425, 495
DpnII GATC 2 cut(s) 423, 493
Ecl136II GAGCTC 1 cut(s) 536
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 538
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 538
FaeI CATG 1 cut(s) 452
FaiI YATR 6 cut(s) 84, 116, 190, 337, 450, 476
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 93, 368, 438
FokI GGATG 4 cut(s) 161, 443, 501, 593
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 93, 368, 438
FspBI CTAG 1 cut(s) 558
GluI GCNGC 3 cut(s) 93, 368, 438
HaeIII GGCC 2 cut(s) 21, 88
HapII CCGG 3 cut(s) 421, 483, 578
Hin1II CATG 1 cut(s) 452
HinfI GANTC 5 cut(s) 185, 211, 283, 550, 617
HpaII CCGG 3 cut(s) 421, 483, 578
HphI GGTGA 3 cut(s) 365, 442, 566
Hpy166II GTNNAC 2 cut(s) 574, 628
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 2 cut(s) 215, 287
Hpy8I GTNNAC 2 cut(s) 574, 628
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 7 cut(s) 70, 82, 92, 163, 367, 547, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 385
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 2 cut(s) 423, 493
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 3 cut(s) 104, 379, 449
LweI GCATC 2 cut(s) 85, 108
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 425, 495
MboI GATC 2 cut(s) 423, 493
MboII GAAGA 6 cut(s) 137, 167, 302, 536, 574, 605
MhlI GDGCHC 2 cut(s) 538, 630
MluCI AATT 5 cut(s) 158, 383, 501, 586, 596
MnlI CCTC 4 cut(s) 145, 295, 323, 355
MseI TTAA 2 cut(s) 225, 390
MslI CAYNNNNRTG 2 cut(s) 34, 579
MspI CCGG 3 cut(s) 421, 483, 578
MspR9I CCNGG 1 cut(s) 578
MwoI GCNNNNNNNGC 2 cut(s) 376, 385
NciI CCSGG 1 cut(s) 578
NdeII GATC 2 cut(s) 423, 493
NlaIII CATG 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 2 cut(s) 118, 493
PfeI GAWTC 5 cut(s) 185, 211, 283, 550, 617
PkrI GCNGC 3 cut(s) 94, 369, 439
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 94
RsaI GTAC 2 cut(s) 9, 373
RsaNI GTAC 2 cut(s) 8, 372
RseI CAYNNNNRTG 2 cut(s) 34, 579
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 2 cut(s) 225, 390
SatI GCNGC 3 cut(s) 93, 368, 438
Sau3AI GATC 2 cut(s) 423, 493
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 2 cut(s) 538, 630
SetI ASST 8 cut(s) 97, 107, 183, 301, 366, 432, 538, 604
SfaNI GCATC 2 cut(s) 85, 108
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 34, 579
Sse9I AATT 5 cut(s) 158, 383, 501, 586, 596
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 538
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 576
TaqI TCGA 1 cut(s) 487
TasI AATT 5 cut(s) 158, 383, 501, 586, 596
TfiI GAWTC 5 cut(s) 185, 211, 283, 550, 617
Tru1I TTAA 2 cut(s) 225, 390
Tru9I TTAA 2 cut(s) 225, 390
TscAI CASTG 1 cut(s) 526
TseI GCWGC 3 cut(s) 92, 367, 437
TspDTI ATGAA 4 cut(s) 177, 296, 309, 581
TspRI CASTG 1 cut(s) 526
VneI GTGCAC 1 cut(s) 626
VspI ATTAAT 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.