Rh7AG215700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010608
Physical Location & Seq
Forward (+)
19969802 .. 19971435
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG215700.1

Sequence Viewer

Length: 462 bp
ATGTATGAATTTGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGCAAACATTGATATTGGAGGGCTATGGAGTGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACTGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCATGAATGTTCACCCGGACGTCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

153

Amino Acids

17.72

Weight (kDa)

4.76

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 70 - 124 6.5e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 454
AclWI GGATC 2 cut(s) 290, 360
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 451
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 2 cut(s) 14, 242
AluBI AGCT 3 cut(s) 40, 158, 395
AluI AGCT 3 cut(s) 40, 158, 395
Alw21I GWGCWC 1 cut(s) 397
AlwI GGATC 2 cut(s) 290, 360
ApeKI GCWGC 2 cut(s) 226, 296
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 1 cut(s) 441
AseI ATTAAT 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 3 cut(s) 224, 301, 435
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 238, 308
BccI CCATC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 447
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 404
BisI GCNGC 2 cut(s) 227, 297
BlsI GCNGC 2 cut(s) 228, 298
Bme1390I CCNGG 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 315, 373
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 238, 308
BsgI GTGCAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 342, 447
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 2 cut(s) 282, 352
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 2 cut(s) 290, 360
BsrI ACTGG 1 cut(s) 284
BssMI GATC 2 cut(s) 282, 352
BssNI GRCGYC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 315, 373
BstKTI GATC 2 cut(s) 285, 355
BstMBI GATC 2 cut(s) 282, 352
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 235, 244
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 238, 308
BtsCI GGATG 2 cut(s) 315, 373
BtsIMutI CAGTG 1 cut(s) 378
CciI TCATGA 1 cut(s) 433
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 308, 434
CviJI RGCY 5 cut(s) 40, 158, 193, 264, 395
CviKI_1 RGCY 5 cut(s) 40, 158, 193, 264, 395
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 284, 354
DpnII GATC 2 cut(s) 282, 352
Ecl136II GAGCTC 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 2 cut(s) 311, 437
FaiI YATR 6 cut(s) 6, 49, 196, 309, 335, 435
FatI CATG 2 cut(s) 307, 433
Fnu4HI GCNGC 2 cut(s) 227, 297
FokI GGATG 2 cut(s) 302, 360
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 2 cut(s) 227, 297
FspBI CTAG 1 cut(s) 417
GluI GCNGC 2 cut(s) 227, 297
HapII CCGG 2 cut(s) 342, 447
Hin1I GRCGYC 1 cut(s) 451
Hin1II CATG 2 cut(s) 311, 437
HinfI GANTC 5 cut(s) 44, 70, 142, 400, 409
HpaII CCGG 2 cut(s) 342, 447
HphI GGTGA 3 cut(s) 224, 301, 435
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 3 cut(s) 74, 146, 434
Hpy8I GTNNAC 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 3 cut(s) 22, 226, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 244
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 451
Hsp92I GRCGYC 1 cut(s) 451
Hsp92II CATG 2 cut(s) 311, 437
Kzo9I GATC 2 cut(s) 282, 352
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 6 cut(s) 26, 59, 159, 265, 339, 355
Lsp1109I GCAGC 2 cut(s) 238, 308
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 451
MalI GATC 2 cut(s) 284, 354
MboI GATC 2 cut(s) 282, 352
MboII GAAGA 4 cut(s) 26, 161, 395, 433
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 5 cut(s) 8, 17, 242, 360, 455
MnlI CCTC 3 cut(s) 154, 182, 214
MseI TTAA 2 cut(s) 84, 249
MspI CCGG 2 cut(s) 342, 447
MspR9I CCNGG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 235, 244
NciI CCSGG 1 cut(s) 447
NdeII GATC 2 cut(s) 282, 352
NlaIII CATG 2 cut(s) 311, 437
PagI TCATGA 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 352
PfeI GAWTC 5 cut(s) 44, 70, 142, 400, 409
PkrI GCNGC 2 cut(s) 228, 298
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 397
PstI CTGCAG 1 cut(s) 408
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 84, 249
SatI GCNGC 2 cut(s) 227, 297
Sau3AI GATC 2 cut(s) 282, 352
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 397
SetI ASST 6 cut(s) 42, 160, 225, 291, 397, 454
SfcI CTRYAG 1 cut(s) 404
Sse9I AATT 5 cut(s) 8, 17, 242, 360, 455
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 445
TaiI ACGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 346
TasI AATT 5 cut(s) 8, 17, 242, 360, 455
TfiI GAWTC 5 cut(s) 44, 70, 142, 400, 409
Tru1I TTAA 2 cut(s) 84, 249
Tru9I TTAA 2 cut(s) 84, 249
TscAI CASTG 1 cut(s) 385
TseI GCWGC 2 cut(s) 226, 296
TspDTI ATGAA 7 cut(s) 21, 36, 155, 168, 422, 440, 450
TspRI CASTG 1 cut(s) 385
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 8
XspI CTAG 1 cut(s) 417
ZraI GACGTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.