Rw1G002570

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010608
Physical Location & Seq
Reverse (-)
4633752 .. 4636604
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002570.1

Sequence Viewer

Length: 612 bp
ATGCTAGGATGTTACTCCACAAATGTTAGGATTCATGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGGCAATGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCCAGTTTGTGTGGAGGCAGGCATGCCGGCCCTTCGCCGTAATGCAACTGAGATAGTTGATATAGAGTGCCACTTGACAGCTAGCATATCCTTTGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

4.74

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 85 - 140 1.1e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
AclWI GGATC 2 cut(s) 338, 408
AcuI CTGAAG 2 cut(s) 234, 450
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 3 cut(s) 290, 500, 605
AluBI AGCT 5 cut(s) 64, 182, 443, 509, 590
AluI AGCT 5 cut(s) 64, 182, 443, 509, 590
Alw21I GWGCWC 1 cut(s) 445
AlwI GGATC 2 cut(s) 338, 408
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 2 cut(s) 274, 344
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AseI ATTAAT 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 272, 349, 473
AsuNHI GCTAGC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 286, 356
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 531
BcnI CCSGG 1 cut(s) 485
BfaI CTAG 4 cut(s) 5, 239, 465, 591
BfmI CTRYAG 1 cut(s) 452
BisI GCNGC 2 cut(s) 275, 345
BlsI GCNGC 2 cut(s) 276, 346
Bme1390I CCNGG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 485
BmtI GCTAGC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 489
BsaWI WCCGGW 2 cut(s) 327, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 258
BseGI GGATG 3 cut(s) 14, 363, 421
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 174, 549
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 286, 356
BsgI GTGCAG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 4 cut(s) 328, 390, 485, 536
BslI CCNNNNNNNGG 1 cut(s) 334
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 2 cut(s) 330, 400
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 2 cut(s) 175, 550
BspHI TCATGA 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 456
BspOI GCTAGC 1 cut(s) 594
BspPI GGATC 2 cut(s) 338, 408
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 535
BssMI GATC 2 cut(s) 330, 400
BssNI GRCGYC 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 529, 533, 537, 592
BstDEI CTNAG 2 cut(s) 183, 558
BstF5I GGATG 3 cut(s) 14, 363, 421
BstKTI GATC 2 cut(s) 333, 403
BstMBI GATC 2 cut(s) 330, 400
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 283, 292
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 286, 356
BsuRI GGCC 1 cut(s) 539
BtsCI GGATG 3 cut(s) 14, 363, 421
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 4 cut(s) 529, 533, 537, 592
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 1 cut(s) 279
CviAII CATG 3 cut(s) 35, 356, 532
CviJI RGCY 8 cut(s) 64, 182, 238, 312, 443, 509, 539, 590
CviKI_1 RGCY 8 cut(s) 64, 182, 238, 312, 443, 509, 539, 590
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 183, 558
DpnI GATC 2 cut(s) 332, 402
DpnII GATC 2 cut(s) 330, 400
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 234, 450
EcoICRI GAGCTC 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 3 cut(s) 38, 359, 535
FaiI YATR 8 cut(s) 36, 73, 357, 383, 533, 572, 596, 610
FatI CATG 3 cut(s) 34, 355, 531
Fnu4HI GCNGC 2 cut(s) 275, 345
FokI GGATG 3 cut(s) 21, 350, 408
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 2 cut(s) 275, 345
FspBI CTAG 4 cut(s) 5, 239, 465, 591
GluI GCNGC 2 cut(s) 275, 345
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 1 cut(s) 539
HapII CCGG 4 cut(s) 328, 390, 485, 536
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 3 cut(s) 38, 359, 535
HinfI GANTC 6 cut(s) 31, 68, 94, 166, 448, 457
HpaII CCGG 4 cut(s) 328, 390, 485, 536
HphI GGTGA 3 cut(s) 272, 349, 473
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 35, 98, 170
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 4 cut(s) 46, 274, 454, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 292
HpyF3I CTNAG 2 cut(s) 183, 558
HpySE526I ACGT 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 3 cut(s) 38, 359, 535
KroI GCCGGC 1 cut(s) 535
KroNI GCCGGC 1 cut(s) 537
Kzo9I GATC 2 cut(s) 330, 400
LmnI GCTCC 2 cut(s) 61, 514
Lsp1109I GCAGC 2 cut(s) 286, 356
MaeI CTAG 4 cut(s) 5, 239, 465, 591
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 332, 402
MboI GATC 2 cut(s) 330, 400
MboII GAAGA 6 cut(s) 50, 185, 227, 443, 481, 512
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 6 cut(s) 41, 290, 408, 493, 503, 605
MnlI CCTC 4 cut(s) 178, 227, 262, 517
MroNI GCCGGC 1 cut(s) 535
MseI TTAA 2 cut(s) 108, 297
MspI CCGG 4 cut(s) 328, 390, 485, 536
MspR9I CCNGG 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 283, 292
NaeI GCCGGC 1 cut(s) 537
NciI CCSGG 1 cut(s) 485
NdeII GATC 2 cut(s) 330, 400
NgoMIV GCCGGC 1 cut(s) 535
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 3 cut(s) 38, 359, 535
NspI RCATGY 1 cut(s) 535
PaeI GCATGC 1 cut(s) 535
PagI TCATGA 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 537
PfeI GAWTC 6 cut(s) 31, 68, 94, 166, 448, 457
PkrI GCNGC 2 cut(s) 276, 346
PshBI ATTAAT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 456
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 2 cut(s) 108, 297
SatI GCNGC 2 cut(s) 275, 345
Sau3AI GATC 2 cut(s) 330, 400
Sau96I GGNCC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 445
SetI ASST 8 cut(s) 66, 184, 273, 339, 445, 492, 511, 592
SfcI CTRYAG 1 cut(s) 452
SphI GCATGC 1 cut(s) 535
Sse9I AATT 6 cut(s) 41, 290, 408, 493, 503, 605
SspMI CTAG 4 cut(s) 5, 239, 465, 591
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 483
TaiI ACGT 1 cut(s) 492
TaqI TCGA 1 cut(s) 394
TasI AATT 6 cut(s) 41, 290, 408, 493, 503, 605
TfiI GAWTC 6 cut(s) 31, 68, 94, 166, 448, 457
Tru1I TTAA 2 cut(s) 108, 297
Tru9I TTAA 2 cut(s) 108, 297
TscAI CASTG 1 cut(s) 433
TseI GCWGC 2 cut(s) 274, 344
TspDTI ATGAA 6 cut(s) 23, 51, 60, 179, 192, 488
TspRI CASTG 1 cut(s) 433
VspI ATTAAT 1 cut(s) 108
XceI RCATGY 1 cut(s) 535
XspI CTAG 4 cut(s) 5, 239, 465, 591
ZraI GACGTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.