Rw6G009140

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010608
Physical Location & Seq
Forward (+)
15328159 .. 15334914
6756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009140.1

Sequence Viewer

Length: 771 bp
ATGGTGATGCAAGGTACGGAGGACGGTCTGTGGAAGGGTTTGCATCAGGGTGTGGCTGCGGGGAAGAGAGATCGTGATCCATTTTCTCCTGGCGTCGTCGTGGACAGGATCGATCGGATCTATTGCGGCTCGGCTCACCGAAGGTTCCAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAATCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAAATGGGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCATGGGCTGCTGACTTGCTCACTATTTGTATCCCATACTCATATCTGTATTAATGGAGTCAAAATTTTAAATGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGTGATGACCGGATCAAGGTGATAGCAGCGACAAATCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCCGGGGCTACACAAAATTTTGAACCTTGGCGTAATGAGGATGAGGTATTGGAAGGAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

256

Amino Acids

29.22

Weight (kDa)

5.42

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 144 - 198 2.4e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 706
AciI CCGC 2 cut(s) 59, 126
AclWI GGATC 5 cut(s) 71, 116, 125, 512, 582
AcsI RAATTY 2 cut(s) 414, 723
AcuI CTGAAG 2 cut(s) 348, 624
AcyI GRCGYC 2 cut(s) 93, 663
AfaI GTAC 2 cut(s) 16, 454
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 4 cut(s) 464, 674, 702, 730
AjnI CCWGG 2 cut(s) 88, 147
AluBI AGCT 4 cut(s) 178, 296, 617, 683
AluI AGCT 4 cut(s) 178, 296, 617, 683
Alw21I GWGCWC 1 cut(s) 619
AlwI GGATC 5 cut(s) 71, 116, 125, 512, 582
ApeKI GCWGC 4 cut(s) 56, 358, 448, 518
ApoI RAATTY 2 cut(s) 414, 723
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AseI ATTAAT 2 cut(s) 222, 402
AsuC2I CCSGG 2 cut(s) 659, 711
AsuHPI GGTGA 5 cut(s) 16, 128, 446, 523, 647
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 619
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 4 cut(s) 43, 345, 460, 530
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 90, 149
BciVI GTATCC 1 cut(s) 391
BcnI CCSGG 2 cut(s) 659, 711
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 626
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 5 cut(s) 57, 127, 359, 449, 519
BlsI GCNGC 5 cut(s) 58, 128, 360, 450, 520
Bme1390I CCNGG 4 cut(s) 90, 149, 659, 711
BmiI GGNNCC 2 cut(s) 146, 708
BmrFI CCNGG 4 cut(s) 90, 149, 659, 711
BmsI GCATC 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 297
BpuMI CCSGG 2 cut(s) 659, 711
Bsa29I ATCGAT 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 93, 663
BsaJI CCNNGG 2 cut(s) 710, 733
BsaWI WCCGGW 2 cut(s) 501, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 90, 149
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 710, 733
BseGI GGATG 3 cut(s) 537, 595, 753
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 43, 345, 460, 530
BsgI GTGCAG 1 cut(s) 467
Bsh1285I CGRYCG 2 cut(s) 115, 568
BshNI GGYRCC 1 cut(s) 706
BshVI ATCGAT 1 cut(s) 111
BsiEI CGRYCG 2 cut(s) 115, 568
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 4 cut(s) 502, 564, 659, 710
BslI CCNNNNNNNGG 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
BspACI CCGC 2 cut(s) 59, 126
BspCNI CTCAG 1 cut(s) 289
BspDI ATCGAT 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 146, 708
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 5 cut(s) 71, 116, 125, 512, 582
BspT107I GGYRCC 1 cut(s) 706
BssECI CCNNGG 2 cut(s) 710, 733
BssMI GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
BssNI GRCGYC 2 cut(s) 93, 663
BssT1I CCWWGG 1 cut(s) 733
Bst2UI CCWGG 2 cut(s) 90, 149
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 2 cut(s) 93, 663
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 537, 595, 753
BstKTI GATC 7 cut(s) 73, 79, 111, 115, 120, 507, 577
BstMBI GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
BstMCI CGRYCG 2 cut(s) 115, 568
BstMWI GCNNNNNNNGC 3 cut(s) 358, 457, 466
BstNI CCWGG 2 cut(s) 90, 149
BstSCI CCNGG 4 cut(s) 88, 147, 657, 709
BstSFI CTRYAG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 43, 345, 460, 530
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 111
BsuI GTATCC 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 111
BtsCI GGATG 3 cut(s) 537, 595, 753
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 685
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 15, 453
CviAII CATG 2 cut(s) 353, 530
CviQI GTAC 2 cut(s) 15, 453
DdeI CTNAG 1 cut(s) 297
DpnI GATC 7 cut(s) 72, 78, 110, 114, 119, 506, 576
DpnII GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 619
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 348, 624
EcoICRI GAGCTC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 88, 147
EcoT14I CCWWGG 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 733
FaeI CATG 2 cut(s) 356, 533
FaiI YATR 6 cut(s) 187, 354, 387, 393, 531, 557
FatI CATG 2 cut(s) 352, 529
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 5 cut(s) 57, 127, 359, 449, 519
FokI GGATG 3 cut(s) 524, 582, 760
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 5 cut(s) 57, 127, 359, 449, 519
FspBI CTAG 1 cut(s) 639
GluI GCNGC 5 cut(s) 57, 127, 359, 449, 519
HapII CCGG 4 cut(s) 502, 564, 659, 710
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 2 cut(s) 93, 663
Hin1II CATG 2 cut(s) 356, 533
HinfI GANTC 7 cut(s) 182, 208, 280, 408, 622, 631, 698
HpaII CCGG 4 cut(s) 502, 564, 659, 710
HphI GGTGA 5 cut(s) 16, 128, 446, 523, 647
Hpy166II GTNNAC 2 cut(s) 103, 655
Hpy188I TCNGA 2 cut(s) 117, 621
Hpy188III TCNNGA 3 cut(s) 74, 212, 284
Hpy8I GTNNAC 2 cut(s) 103, 655
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 3 cut(s) 28, 135, 754
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 5 cut(s) 10, 43, 160, 448, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 457, 466
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 2 cut(s) 93, 663
Hsp92II CATG 2 cut(s) 356, 533
Kzo9I GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 4 cut(s) 43, 345, 460, 530
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 663
MalI GATC 7 cut(s) 72, 78, 110, 114, 119, 506, 576
MboI GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
MboII GAAGA 7 cut(s) 76, 164, 299, 341, 617, 655, 686
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 7 cut(s) 155, 414, 464, 582, 667, 677, 723
MlyI GAGTC 1 cut(s) 417
MnlI CCTC 6 cut(s) 13, 292, 341, 436, 738, 744
MseI TTAA 4 cut(s) 222, 402, 419, 471
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 4 cut(s) 502, 564, 659, 710
MspR9I CCNGG 4 cut(s) 90, 149, 659, 711
MvaI CCWGG 2 cut(s) 90, 149
MwoI GCNNNNNNNGC 3 cut(s) 358, 457, 466
NciI CCSGG 2 cut(s) 659, 711
NdeII GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
NlaIII CATG 2 cut(s) 356, 533
NlaIV GGNNCC 2 cut(s) 146, 708
NmeAIII GCCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PfeI GAWTC 6 cut(s) 182, 208, 280, 622, 631, 698
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 5 cut(s) 58, 128, 360, 450, 520
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PshBI ATTAAT 2 cut(s) 222, 402
Psp124BI GAGCTC 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 88, 147
PspGI CCWGG 2 cut(s) 88, 147
PspN4I GGNNCC 2 cut(s) 146, 708
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 1 cut(s) 117
PvuI CGATCG 1 cut(s) 115
RsaI GTAC 2 cut(s) 16, 454
RsaNI GTAC 2 cut(s) 15, 453
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 619
SaqAI TTAA 4 cut(s) 222, 402, 419, 471
SatI GCNGC 5 cut(s) 57, 127, 359, 449, 519
Sau3AI GATC 7 cut(s) 70, 76, 108, 112, 117, 504, 574
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 4 cut(s) 90, 149, 659, 711
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 7 cut(s) 155, 414, 464, 582, 667, 677, 723
SsiI CCGC 2 cut(s) 59, 126
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 619
StyD4I CCNGG 4 cut(s) 88, 147, 657, 709
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 666
TaqI TCGA 2 cut(s) 111, 568
TasI AATT 7 cut(s) 155, 414, 464, 582, 667, 677, 723
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 6 cut(s) 182, 208, 280, 622, 631, 698
Tru1I TTAA 4 cut(s) 222, 402, 419, 471
Tru9I TTAA 4 cut(s) 222, 402, 419, 471
TscAI CASTG 1 cut(s) 607
TseI GCWGC 4 cut(s) 56, 358, 448, 518
TspDTI ATGAA 5 cut(s) 174, 293, 306, 438, 662
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 607
VspI ATTAAT 2 cut(s) 222, 402
XapI RAATTY 2 cut(s) 414, 723
XspI CTAG 1 cut(s) 639
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.