Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003835.1

Orthogroup ID

OG0010608

Physical Location & Seq

Genomic Coordinates Reverse (-)

14986 .. 17252

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003835.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggcggttacgaagcctagagtgattgccttgttagatgttgatgggactctcactgctcccagaaagatattagaaatgaatccagaagatgaagttgaggaaaatgggccaaacattgatattggagggctatggagtgaagtgagtggtgatagggaggtgcagcgtacaatgcttcaattgcttaatcaacttgatggctttagtagtgatgaccggatcaaggtgatagcagcgacaaatcatgctgacatccttgaccctgctcttatgcgttccggtcgattggatagtaaaattgagtttccacatcccactgaagaagcaagagctcggattctgcagattcactctaggaagatgaatgttcacccggacgtcaattttgaagaattagctcgctctactgatgattcaatggtgcacaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

144

Amino Acids

16.15

Weight (kDa)

4.85

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010608)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g19870
rosa_chinensis	RchiOBHm_Chr7g0210991 RchiOBHm_Chr7g0228541 RchiOBHm_Chr7g0233871
rosa_multiflora	Rmu_sc0003835.1_g000005 Rmu_ssc0000046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015060 Rroxscaffold_5G00336650
rosa_samantha	Rh1AG079900 Rh1CG074000 Rh4AG142700 Rh5AG364900 Rh5DG148800 Rh5DG239700 Rh6AG367700 Rh7AG215700 Rh7AG402500 Rh7CG459000
rosa_wichuraiana	Rw1G002570 Rw2G045860 Rw6G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	384
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	182, 392, 420
AluBI	AGCT	2 cut(s)	335, 401
AluI	AGCT	2 cut(s)	335, 401
Alw21I	GWGCWC	2 cut(s)	337, 429
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	166, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	164, 241, 365
BaeGI	GKGCMC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	2 cut(s)	337, 429
BbvI	GCAGC	2 cut(s)	178, 248
BccI	CCATC	2 cut(s)	38, 194
BcnI	CCSGG	1 cut(s)	377
BfaI	CTAG	2 cut(s)	18, 357
BfmI	CTRYAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	167, 237
BlsI	GCNGC	2 cut(s)	168, 238
Bme1390I	CCNGG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	219, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	255, 313
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	178, 248
BsgI	GTGCAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	337, 429
BsiSI	CCGG	3 cut(s)	220, 282, 377
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	337, 429
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	230
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	255, 313
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 184
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	178, 248
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	255, 313
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 318
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	6 cut(s)	16, 112, 133, 204, 335, 401
CviKI_1	RGCY	6 cut(s)	16, 112, 133, 204, 335, 401
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	136, 249, 275
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	167, 237
FokI	GGATG	2 cut(s)	242, 300
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	167, 237
FspBI	CTAG	2 cut(s)	18, 357
GluI	GCNGC	2 cut(s)	167, 237
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	220, 282, 377
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	5 cut(s)	49, 82, 340, 349, 416
HpaII	CCGG	3 cut(s)	220, 282, 377
HphI	GGTGA	3 cut(s)	164, 241, 365
Hpy166II	GTNNAC	2 cut(s)	373, 427
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	373, 427
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	166, 346, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 184
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	76, 99, 233, 279, 295, 390
Lsp1109I	GCAGC	2 cut(s)	178, 248
MaeI	CTAG	2 cut(s)	18, 357
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	4 cut(s)	101, 335, 373, 404
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	337, 429
MluCI	AATT	4 cut(s)	182, 300, 385, 395
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	94, 122, 154
MseI	TTAA	1 cut(s)	189
MspI	CCGG	3 cut(s)	220, 282, 377
MspR9I	CCNGG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	175, 184
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	82, 340, 349, 416
PkrI	GCNGC	2 cut(s)	168, 238
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	167, 237
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	337, 429
SetI	ASST	5 cut(s)	165, 231, 337, 384, 403
SfcI	CTRYAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	182, 300, 385, 395
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	18, 357
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	286
TasI	AATT	4 cut(s)	182, 300, 385, 395
TfiI	GAWTC	4 cut(s)	82, 340, 349, 416
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	61, 325
TseI	GCWGC	2 cut(s)	166, 236
TspDTI	ATGAA	3 cut(s)	95, 108, 380
TspRI	CASTG	2 cut(s)	61, 325
VneI	GTGCAC	1 cut(s)	425
XspI	CTAG	2 cut(s)	18, 357
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.