Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000046.1

Orthogroup ID

OG0010608

Physical Location & Seq

Genomic Coordinates Forward (+)

7 .. 1080

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgcttgaattgcttaatcaacttgatggctttagtagcgatgaccggatcaaggtgatagcagcaacaaatcgtgctgacatccttgatcctgctcttatgcgttctggtcgattggatcgtaaaattgagtttccacatcccactgaagaagctagagctcggattctgcagattcactctaggaagatgaatgttcacccggacgtcaattttgaagaattagctcgttctactgatgatttcaatggtgcacaactaaaagcagtttgtgtggaggcaggcatgctggcccttcgccgtgatgcaactgaggtaaaccacgaagatttcaatgaaggtattatacaagttcaagcaaagaagaaggctagcctcaactattatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

5.79

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010608)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g19870
rosa_chinensis	RchiOBHm_Chr7g0210991 RchiOBHm_Chr7g0228541 RchiOBHm_Chr7g0233871
rosa_multiflora	Rmu_sc0003835.1_g000005 Rmu_ssc0000046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015060 Rroxscaffold_5G00336650
rosa_samantha	Rh1AG079900 Rh1CG074000 Rh4AG142700 Rh5AG364900 Rh5DG148800 Rh5DG239700 Rh6AG367700 Rh7AG215700 Rh7AG402500 Rh7CG459000
rosa_wichuraiana	Rw1G002570 Rw2G045860 Rw6G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AclWI	GGATC	3 cut(s)	56, 83, 126
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	8, 218, 247, 334, 356
AluBI	AGCT	3 cut(s)	155, 161, 227
AluI	AGCT	3 cut(s)	155, 161, 227
Alw21I	GWGCWC	2 cut(s)	163, 256
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	56, 83, 126
AoxI	GGCC	1 cut(s)	291
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	67, 191
AsuNHI	GCTAGC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
Bbv12I	GWGCWC	2 cut(s)	163, 256
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	3 cut(s)	156, 183, 372
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	295
BmtI	GCTAGC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	81, 139
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	163, 256
BsiSI	CCGG	2 cut(s)	46, 203
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	163, 256
Bsp143I	GATC	3 cut(s)	48, 88, 118
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	174
BspOI	GCTAGC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	56, 83, 126
BssMI	GATC	3 cut(s)	48, 88, 118
BssNI	GRCGYC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	283, 287, 291, 373
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	81, 139
BstKTI	GATC	3 cut(s)	51, 91, 121
BstMBI	GATC	3 cut(s)	48, 88, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 36
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	81, 139
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	4 cut(s)	283, 287, 291, 373
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	7 cut(s)	30, 155, 161, 227, 293, 371, 375
CviKI_1	RGCY	7 cut(s)	30, 155, 161, 227, 293, 371, 375
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	50, 90, 120
DpnII	GATC	3 cut(s)	48, 88, 118
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	101, 287, 347, 387, 391
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	68, 126
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	156, 183, 372
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	46, 203
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	2 cut(s)	166, 175
HpaII	CCGG	2 cut(s)	46, 203
HphI	GGTGA	2 cut(s)	67, 191
Hpy166II	GTNNAC	3 cut(s)	199, 254, 319
Hpy188I	TCNGA	1 cut(s)	165
Hpy8I	GTNNAC	3 cut(s)	199, 254, 319
HpyAV	CCTTC	3 cut(s)	305, 332, 361
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	172, 254, 308, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 36
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	48, 88, 118
LpnPI	CCDG	6 cut(s)	59, 93, 105, 216, 267, 275
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	3 cut(s)	156, 183, 372
MaeII	ACGT	1 cut(s)	207
MalI	GATC	3 cut(s)	50, 90, 120
MboI	GATC	3 cut(s)	48, 88, 118
MboII	GAAGA	5 cut(s)	161, 199, 230, 338, 376
MhlI	GDGCHC	2 cut(s)	163, 256
MluCI	AATT	4 cut(s)	8, 126, 211, 221
MnlI	CCTC	3 cut(s)	271, 307, 386
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	15
MspI	CCGG	2 cut(s)	46, 203
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	10, 36
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	48, 88, 118
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	166, 175
PkrI	GCNGC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	48, 88, 118
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	163, 256
SetI	ASST	7 cut(s)	57, 157, 163, 210, 229, 318, 343
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	4 cut(s)	8, 126, 211, 221
SspMI	CTAG	3 cut(s)	156, 183, 372
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	112
TasI	AATT	4 cut(s)	8, 126, 211, 221
TfiI	GAWTC	2 cut(s)	166, 175
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	206, 351
TspRI	CASTG	1 cut(s)	151
VneI	GTGCAC	1 cut(s)	252
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	3 cut(s)	156, 183, 372
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.