Rh5DG148800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010608
Physical Location & Seq
Forward (+)
15108129 .. 15112304
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG148800.1

Sequence Viewer

Length: 261 bp
ATGCTTGAATTGCTTAATCAACTTGTTGGCTTTAGTAGTGATGACTGGATCAAGGTGATAGCAGCGACAACTCATGCTGACATCCTTGACCCTGCTCTTATGCGTTCCGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGGATTCTGCAGATTCATTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTCAATGGTGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

86

Amino Acids

9.86

Weight (kDa)

5.63

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 3 - 46 2.2e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AclWI GGATC 2 cut(s) 56, 126
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 207
AgsI TTSAA 3 cut(s) 8, 218, 246
AluBI AGCT 2 cut(s) 161, 227
AluI AGCT 2 cut(s) 161, 227
Alw21I GWGCWC 2 cut(s) 163, 255
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 2 cut(s) 56, 126
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 67, 191
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 163, 255
BbvI GCAGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 81, 139
BseNI ACTGG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 163, 255
BsiSI CCGG 2 cut(s) 108, 203
Bsp1286I GDGCHC 2 cut(s) 163, 255
Bsp143I GATC 2 cut(s) 48, 118
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 2 cut(s) 56, 126
BsrI ACTGG 1 cut(s) 50
BssMI GATC 2 cut(s) 48, 118
BssNI GRCGYC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 229
BstF5I GGATG 2 cut(s) 81, 139
BstKTI GATC 2 cut(s) 51, 121
BstMBI GATC 2 cut(s) 48, 118
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 81, 139
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 229
CviAII CATG 1 cut(s) 74
CviJI RGCY 3 cut(s) 30, 161, 227
CviKI_1 RGCY 3 cut(s) 30, 161, 227
DpnI GATC 2 cut(s) 50, 120
DpnII GATC 2 cut(s) 48, 118
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 1 cut(s) 77
FaiI YATR 2 cut(s) 75, 101
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 68, 126
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 63
HapII CCGG 2 cut(s) 108, 203
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 77
HinfI GANTC 3 cut(s) 166, 175, 242
HpaII CCGG 2 cut(s) 108, 203
HphI GGTGA 2 cut(s) 67, 191
Hpy166II GTNNAC 2 cut(s) 199, 253
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 2 cut(s) 199, 253
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 172, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 2 cut(s) 48, 118
LpnPI CCDG 4 cut(s) 31, 105, 121, 216
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 50, 120
MboI GATC 2 cut(s) 48, 118
MboII GAAGA 3 cut(s) 161, 199, 230
MhlI GDGCHC 2 cut(s) 163, 255
MluCI AATT 4 cut(s) 8, 126, 211, 221
MseI TTAA 1 cut(s) 15
MspI CCGG 2 cut(s) 108, 203
MspR9I CCNGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 48, 118
NlaIII CATG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 3 cut(s) 166, 175, 242
PkrI GCNGC 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 48, 118
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 163, 255
SetI ASST 4 cut(s) 57, 163, 210, 229
SfcI CTRYAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 8, 126, 211, 221
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 112
TasI AATT 4 cut(s) 8, 126, 211, 221
TfiI GAWTC 3 cut(s) 166, 175, 242
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 167, 206
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 251
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.